Wall clock time and date at job start Mon Mar 30 2020 02:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47897 * 110.99555 * 2 1 4 4 C 1.54000 * 107.05672 * 145.84575 * 3 2 1 5 5 C 1.54598 * 105.22213 * 358.72428 * 4 3 2 6 6 C 1.48533 * 111.00245 * 117.39949 * 2 1 3 7 7 H 1.08999 * 110.66371 * 318.88179 * 6 2 1 8 8 C 1.53000 * 110.66887 * 81.84288 * 6 2 1 9 9 N 1.46900 * 109.47115 * 303.54958 * 8 6 2 10 10 C 1.46900 * 110.99922 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47287 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47106 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00125 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99831 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00154 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99809 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47064 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46838 * 120.00144 * 16 14 12 19 19 H 1.48498 * 109.47066 * 240.00181 * 16 14 12 20 20 H 1.08997 * 109.47230 * 60.12839 * 1 2 3 21 21 H 1.09004 * 109.46827 * 180.12085 * 1 2 3 22 22 H 1.08993 * 109.47082 * 300.11988 * 1 2 3 23 23 H 1.09000 * 109.91881 * 26.49521 * 3 2 1 24 24 H 1.08997 * 109.91908 * 265.19336 * 3 2 1 25 25 H 1.09002 * 110.31026 * 117.69182 * 4 3 2 26 26 H 1.09000 * 110.30915 * 239.76211 * 4 3 2 27 27 H 1.09003 * 110.72246 * 96.45403 * 5 4 3 28 28 H 1.09003 * 110.72391 * 219.72762 * 5 4 3 29 29 H 1.09002 * 109.46765 * 63.54373 * 8 6 2 30 30 H 1.09002 * 109.47042 * 183.54804 * 8 6 2 31 31 H 1.00898 * 111.00111 * 303.94836 * 9 8 6 32 32 H 1.08996 * 109.47171 * 300.00227 * 10 9 8 33 33 H 1.09000 * 109.46935 * 59.99696 * 10 9 8 34 34 H 1.09001 * 109.46943 * 300.00488 * 11 10 9 35 35 H 1.09003 * 109.46783 * 60.00279 * 11 10 9 36 36 H 0.97004 * 120.00129 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3660 0.8266 5 6 3.4504 -0.0921 1.3175 6 6 2.0014 -0.6381 1.2311 7 1 1.4220 -0.3347 2.1030 8 6 2.0053 -2.1617 1.0912 9 7 0.6475 -2.6285 0.7809 10 6 0.6129 -4.0901 0.6386 11 6 -0.8144 -4.5377 0.3171 12 6 -0.8497 -6.0371 0.1704 13 1 0.0553 -6.6132 0.2946 14 6 -2.0376 -6.6734 -0.1212 15 7 -3.1397 -5.9719 -0.2718 16 14 -2.0814 -8.5322 -0.3022 17 1 -0.7193 -9.0829 -0.0861 18 1 -3.0120 -9.1056 0.7030 19 1 -2.5479 -8.8857 -1.6670 20 1 -0.3633 0.5118 -0.8911 21 1 -0.3633 -1.0277 0.0022 22 1 -0.3633 0.5157 0.8889 23 1 1.2758 2.0561 0.4572 24 1 2.2122 1.6967 -1.0212 25 1 4.1470 1.6456 0.2024 26 1 3.2142 2.0442 1.6757 27 1 4.1138 -0.6534 0.6594 28 1 3.8132 -0.1172 2.3451 29 1 2.6816 -2.4509 0.2867 30 1 2.3394 -2.6115 2.0262 31 1 -0.0104 -2.3173 1.4799 32 1 1.2795 -4.3924 -0.1691 33 1 0.9375 -4.5537 1.5702 34 1 -1.4806 -4.2354 1.1251 35 1 -1.1394 -4.0741 -0.6144 36 1 -3.9753 -6.4196 -0.4773 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226053263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:15 Heat of formation + Delta-G solvation = -3.588134 kcal Electronic energy + Delta-G solvation = -14236.495224 eV Core-core repulsion = 11948.026705 eV Total energy + Delta-G solvation = -2288.468519 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.08276 -35.62136 -32.94620 -32.00244 -30.59448 -28.19278 -25.54603 -24.53945 -22.69381 -21.02102 -20.54479 -19.84597 -16.31169 -16.12459 -15.53456 -14.97372 -14.44281 -14.06495 -13.93741 -13.50430 -12.86901 -12.64822 -12.34879 -12.15428 -11.74679 -11.34343 -11.20123 -11.08531 -10.96620 -10.91482 -10.78727 -10.54182 -10.44769 -9.91189 -9.32573 -9.09751 -8.32673 -8.19745 -7.65987 -5.97274 -3.99420 3.33094 3.40373 3.44616 4.14629 4.43391 4.55279 4.70938 4.93848 5.01585 5.20871 5.38907 5.47603 5.52060 5.63071 5.72953 5.75198 5.81356 5.87092 5.90879 5.98028 6.14381 6.29079 6.37769 6.47220 6.66781 7.02730 7.15139 7.30859 7.53587 7.76312 7.86940 7.99750 8.12065 8.47250 9.08141 9.64310 11.14243 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.069149 B = 0.005251 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.826337 B = 5330.892404 C = 5621.269713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.500 5.500 3 C 0.031 3.969 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.066 3.934 7 H 0.047 0.953 8 C 0.074 3.926 9 N -0.682 5.682 10 C 0.065 3.935 11 C 0.025 3.975 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 H 0.057 0.943 21 H 0.113 0.887 22 H 0.013 0.987 23 H 0.038 0.962 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.330 0.670 32 H 0.059 0.941 33 H 0.013 0.987 34 H 0.012 0.988 35 H 0.026 0.974 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.584 13.239 3.521 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.224 5.224 3 C -0.098 4.098 4 C -0.168 4.168 5 C -0.157 4.157 6 C -0.043 4.043 7 H 0.065 0.935 8 C -0.056 4.056 9 N -0.312 5.312 10 C -0.063 4.063 11 C -0.012 4.012 12 C -0.559 4.559 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 H 0.076 0.924 21 H 0.132 0.868 22 H 0.031 0.969 23 H 0.056 0.944 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.043 0.957 31 H 0.147 0.853 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.030 0.970 35 H 0.044 0.956 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.615 13.037 2.329 16.972 hybrid contribution -0.395 -0.765 1.537 1.762 sum 10.220 12.272 3.866 16.431 Atomic orbital electron populations 1.22877 0.86888 1.05592 0.98898 1.64590 1.09110 1.12696 1.36052 1.22912 0.95512 0.91129 1.00216 1.22378 0.98008 0.97041 0.99402 1.22516 0.96489 0.95615 1.01085 1.22858 0.94684 0.95209 0.91521 0.93541 1.21871 0.92543 0.92230 0.98974 1.60684 1.05474 1.13716 1.51369 1.22168 1.01640 0.84150 0.98331 1.19070 0.89269 0.95492 0.97393 1.21227 0.94394 0.92325 1.47939 0.92738 1.24999 0.95714 0.98215 0.95434 1.69982 0.99241 1.35242 1.48854 0.86541 0.77997 0.85811 0.77673 1.19776 1.21081 1.20973 0.92428 0.86839 0.96864 0.94353 0.90725 0.91214 0.91928 0.90530 0.91340 0.90674 0.95700 0.85264 0.92279 0.96866 0.96958 0.95600 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.05 60.07 0.54 0.63 16 2 N -0.50 -7.11 5.23 -230.74 -1.21 -8.32 16 3 C 0.03 0.35 6.70 -2.75 -0.02 0.33 16 4 C -0.13 -1.27 6.92 -25.37 -0.18 -1.45 16 5 C -0.12 -1.27 6.52 -24.79 -0.16 -1.43 16 6 C 0.07 0.87 2.71 -65.70 -0.18 0.70 16 7 H 0.05 0.61 7.96 -51.93 -0.41 0.20 16 8 C 0.07 1.12 5.49 -3.82 -0.02 1.10 16 9 N -0.68 -12.29 3.97 -113.78 -0.45 -12.74 16 10 C 0.07 1.40 5.62 -3.82 -0.02 1.37 16 11 C 0.03 0.66 5.23 -27.88 -0.15 0.52 16 12 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.17 13.29 55.43 0.74 -26.44 16 16 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 20 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 21 H 0.11 1.91 5.27 -51.93 -0.27 1.64 16 22 H 0.01 0.17 8.00 -51.93 -0.42 -0.24 16 23 H 0.04 0.42 7.73 -51.93 -0.40 0.02 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.84 7.98 -51.93 -0.41 0.42 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.33 5.75 8.19 -39.29 -0.32 5.43 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 286.79 15.07 4.32 4.32 Total: -1.00 -30.11 286.79 -8.64 -38.75 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.43 Total: -0.50 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.59 Total: -11.93 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.92 Total: -47.50 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.11 -8.64 -38.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226053263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.158 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds