Wall clock time and date at job start Mon Mar 30 2020 02:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47897 * 110.99555 * 2 1 4 4 C 1.54000 * 107.05672 * 145.84575 * 3 2 1 5 5 C 1.54598 * 105.22213 * 358.72428 * 4 3 2 6 6 C 1.48533 * 111.00245 * 117.39949 * 2 1 3 7 7 H 1.08999 * 110.66371 * 318.88179 * 6 2 1 8 8 C 1.53000 * 110.66887 * 81.84288 * 6 2 1 9 9 N 1.46900 * 109.47115 * 303.54958 * 8 6 2 10 10 C 1.46900 * 110.99922 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47287 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47106 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00125 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99831 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00154 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99809 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47064 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46838 * 120.00144 * 16 14 12 19 19 H 1.48498 * 109.47066 * 240.00181 * 16 14 12 20 20 H 1.08997 * 109.47230 * 60.12839 * 1 2 3 21 21 H 1.09004 * 109.46827 * 180.12085 * 1 2 3 22 22 H 1.08993 * 109.47082 * 300.11988 * 1 2 3 23 23 H 1.09000 * 109.91881 * 26.49521 * 3 2 1 24 24 H 1.08997 * 109.91908 * 265.19336 * 3 2 1 25 25 H 1.09002 * 110.31026 * 117.69182 * 4 3 2 26 26 H 1.09000 * 110.30915 * 239.76211 * 4 3 2 27 27 H 1.09003 * 110.72246 * 96.45403 * 5 4 3 28 28 H 1.09003 * 110.72391 * 219.72762 * 5 4 3 29 29 H 1.09002 * 109.46765 * 63.54373 * 8 6 2 30 30 H 1.09002 * 109.47042 * 183.54804 * 8 6 2 31 31 H 1.00898 * 111.00111 * 303.94836 * 9 8 6 32 32 H 1.08996 * 109.47171 * 300.00227 * 10 9 8 33 33 H 1.09000 * 109.46935 * 59.99696 * 10 9 8 34 34 H 1.09001 * 109.46943 * 300.00488 * 11 10 9 35 35 H 1.09003 * 109.46783 * 60.00279 * 11 10 9 36 36 H 0.97004 * 120.00129 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3660 0.8266 5 6 3.4504 -0.0921 1.3175 6 6 2.0014 -0.6381 1.2311 7 1 1.4220 -0.3347 2.1030 8 6 2.0053 -2.1617 1.0912 9 7 0.6475 -2.6285 0.7809 10 6 0.6129 -4.0901 0.6386 11 6 -0.8144 -4.5377 0.3171 12 6 -0.8497 -6.0371 0.1704 13 1 0.0553 -6.6132 0.2946 14 6 -2.0376 -6.6734 -0.1212 15 7 -3.1397 -5.9719 -0.2718 16 14 -2.0814 -8.5322 -0.3022 17 1 -0.7193 -9.0829 -0.0861 18 1 -3.0120 -9.1056 0.7030 19 1 -2.5479 -8.8857 -1.6670 20 1 -0.3633 0.5118 -0.8911 21 1 -0.3633 -1.0277 0.0022 22 1 -0.3633 0.5157 0.8889 23 1 1.2758 2.0561 0.4572 24 1 2.2122 1.6967 -1.0212 25 1 4.1470 1.6456 0.2024 26 1 3.2142 2.0442 1.6757 27 1 4.1138 -0.6534 0.6594 28 1 3.8132 -0.1172 2.3451 29 1 2.6816 -2.4509 0.2867 30 1 2.3394 -2.6115 2.0262 31 1 -0.0104 -2.3173 1.4799 32 1 1.2795 -4.3924 -0.1691 33 1 0.9375 -4.5537 1.5702 34 1 -1.4806 -4.2354 1.1251 35 1 -1.1394 -4.0741 -0.6144 36 1 -3.9753 -6.4196 -0.4773 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226053263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:15 Heat of formation + Delta-G solvation = -24.008150 kcal Electronic energy + Delta-G solvation = -14237.380702 eV Core-core repulsion = 11948.026705 eV Total energy + Delta-G solvation = -2289.353997 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.11054 -37.19109 -34.99601 -32.97626 -32.20963 -29.73047 -26.72189 -26.21603 -24.16902 -22.57762 -21.60525 -21.07360 -18.49807 -17.17775 -16.86818 -16.38730 -16.14333 -15.41617 -15.20001 -14.72021 -14.45533 -14.14204 -13.82981 -13.37568 -13.18647 -12.91414 -12.72761 -12.49503 -12.26812 -12.26532 -12.09019 -11.87551 -11.75428 -11.41117 -11.35488 -11.13433 -10.56208 -9.29835 -9.08159 -8.19823 -6.31164 1.40658 1.41356 1.54664 2.41141 3.12052 3.13771 3.32777 3.81174 3.91231 4.10809 4.21037 4.36513 4.53020 4.58917 4.60227 4.62961 4.71406 4.75611 4.80493 4.95673 5.03571 5.06107 5.08833 5.23286 5.33725 5.44374 5.46731 5.69190 5.79491 6.08810 6.16293 6.25208 6.32417 6.55697 6.86328 7.38181 8.92534 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.069149 B = 0.005251 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.826337 B = 5330.892404 C = 5621.269713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.522 5.522 3 C 0.028 3.972 4 C -0.124 4.124 5 C -0.114 4.114 6 C 0.066 3.934 7 H 0.049 0.951 8 C 0.076 3.924 9 N -0.685 5.685 10 C 0.084 3.916 11 C 0.033 3.967 12 C -0.544 4.544 13 H 0.059 0.941 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.967 3.033 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.278 1.278 20 H 0.058 0.942 21 H 0.086 0.914 22 H 0.022 0.978 23 H 0.043 0.957 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.333 0.667 32 H 0.054 0.946 33 H 0.018 0.982 34 H -0.009 1.009 35 H -0.006 1.006 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.036 13.317 4.125 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.247 5.247 3 C -0.100 4.100 4 C -0.162 4.162 5 C -0.152 4.152 6 C -0.043 4.043 7 H 0.067 0.933 8 C -0.054 4.054 9 N -0.315 5.315 10 C -0.045 4.045 11 C -0.004 4.004 12 C -0.583 4.583 13 H 0.077 0.923 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.792 3.208 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.204 1.204 20 H 0.077 0.923 21 H 0.105 0.895 22 H 0.040 0.960 23 H 0.061 0.939 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.151 0.849 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.009 0.991 35 H 0.012 0.988 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.087 13.133 2.939 18.089 hybrid contribution -0.861 -0.725 1.335 1.746 sum 11.227 12.408 4.274 17.271 Atomic orbital electron populations 1.22723 0.87673 1.03926 0.99438 1.64548 1.08622 1.14679 1.36822 1.22975 0.96525 0.89608 1.00894 1.22376 0.97330 0.96650 0.99837 1.22518 0.94429 0.95961 1.02317 1.22857 0.96590 0.93583 0.91221 0.93340 1.21927 0.90369 0.93918 0.99151 1.60617 1.07490 1.11315 1.52115 1.21775 0.98047 0.86443 0.98205 1.18905 0.91891 0.94656 0.94954 1.21653 0.94851 0.93601 1.48188 0.92251 1.25969 0.95194 1.03752 0.94766 1.70114 0.99982 1.37595 1.49505 0.85370 0.78541 0.79097 0.77841 1.18600 1.20257 1.20360 0.92274 0.89515 0.95969 0.93887 0.90583 0.89893 0.90368 0.90784 0.89438 0.91433 0.94483 0.84902 0.92735 0.96417 0.99054 0.98806 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 9.05 127.69 1.16 1.48 16 2 N -0.52 -14.32 5.23 -883.92 -4.62 -18.95 16 3 C 0.03 0.59 6.70 86.45 0.58 1.17 16 4 C -0.12 -2.05 6.92 31.48 0.22 -1.83 16 5 C -0.11 -2.13 6.52 31.85 0.21 -1.92 16 6 C 0.07 1.64 2.71 45.32 0.12 1.77 16 7 H 0.05 1.20 7.96 -2.39 -0.02 1.18 16 8 C 0.08 2.22 5.49 86.30 0.47 2.69 16 9 N -0.68 -24.85 3.97 -513.89 -2.04 -26.89 16 10 C 0.08 3.64 5.62 86.30 0.49 4.13 16 11 C 0.03 1.82 5.23 29.85 0.16 1.98 16 12 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 14 C 0.00 0.06 5.46 84.66 0.46 0.53 16 15 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 16 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.09 3.00 5.27 -2.39 -0.01 2.99 16 22 H 0.02 0.58 8.00 -2.39 -0.02 0.56 16 23 H 0.04 0.87 7.73 -2.39 -0.02 0.85 16 24 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.44 7.98 -2.39 -0.02 1.42 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 2.08 8.04 -2.39 -0.02 2.06 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.33 11.77 8.19 -89.70 -0.73 11.04 16 32 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 34 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 35 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 36 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -64.58 286.79 0.03 -64.54 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.29 Total: 13.23 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 4.09 Total: -21.48 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -6.38 Total: -103.14 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -64.58 0.03 -64.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226053263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.534 kcal (2) G-P(sol) polarization free energy of solvation -64.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds