Wall clock time and date at job start Mon Mar 30 2020 02:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47904 * 110.99993 * 2 1 4 4 C 1.53990 * 107.05481 * 214.15780 * 3 2 1 5 5 C 1.54591 * 105.14419 * 1.22008 * 4 3 2 6 6 C 1.48530 * 111.00218 * 242.60133 * 2 1 3 7 7 H 1.09006 * 110.66710 * 41.28286 * 6 2 1 8 8 C 1.53003 * 110.66746 * 278.16023 * 6 2 1 9 9 N 1.46900 * 109.47168 * 174.80205 * 8 6 2 10 10 C 1.46895 * 111.00036 * 174.78755 * 9 8 6 11 11 C 1.53002 * 109.47182 * 179.97438 * 10 9 8 12 12 C 1.50707 * 109.47000 * 180.02562 * 11 10 9 13 13 H 1.07993 * 120.00133 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99641 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99819 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00335 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47082 * 90.00222 * 16 14 12 18 18 H 1.48497 * 109.47404 * 210.00530 * 16 14 12 19 19 H 1.48500 * 109.47117 * 330.00594 * 16 14 12 20 20 H 1.08997 * 109.47116 * 62.60074 * 1 2 3 21 21 H 1.09000 * 109.47269 * 302.59623 * 1 2 3 22 22 H 1.09001 * 109.46780 * 182.59633 * 1 2 3 23 23 H 1.09001 * 109.91485 * 333.50744 * 3 2 1 24 24 H 1.08994 * 109.91974 * 94.60266 * 3 2 1 25 25 H 1.09001 * 110.31016 * 120.14409 * 4 3 2 26 26 H 1.09005 * 110.30943 * 242.30384 * 4 3 2 27 27 H 1.09006 * 110.72694 * 140.31681 * 5 4 3 28 28 H 1.08998 * 110.72582 * 263.42383 * 5 4 3 29 29 H 1.08997 * 109.46747 * 294.79805 * 8 6 2 30 30 H 1.08996 * 109.47245 * 54.79938 * 8 6 2 31 31 H 1.00904 * 111.00081 * 298.74411 * 9 8 6 32 32 H 1.08995 * 109.47359 * 299.99969 * 10 9 8 33 33 H 1.08999 * 109.47084 * 59.99951 * 10 9 8 34 34 H 1.08995 * 109.47129 * 300.00332 * 11 10 9 35 35 H 1.09000 * 109.46820 * 60.00636 * 11 10 9 36 36 H 0.96992 * 119.99729 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2982 1.3659 -0.8266 5 6 3.4492 -0.0930 -1.3153 6 6 2.0013 -0.6381 -1.2311 7 1 1.4237 -0.3324 -2.1035 8 6 2.0052 -2.1617 -1.0912 9 7 2.4175 -2.7692 -2.3636 10 6 2.5523 -4.2260 -2.2321 11 6 2.9814 -4.8217 -3.5745 12 6 3.1191 -6.3164 -3.4397 13 1 2.9209 -6.7937 -2.4915 14 6 3.4992 -7.0745 -4.5269 15 7 3.6189 -8.3789 -4.4095 16 14 3.8427 -6.2490 -6.1670 17 1 5.2776 -5.8734 -6.2412 18 1 3.5190 -7.1877 -7.2712 19 1 3.0048 -5.0294 -6.2925 20 1 -0.3633 0.4729 -0.9124 21 1 -0.3634 0.5536 0.8658 22 1 -0.3633 -1.0266 0.0466 23 1 1.2758 2.0561 -0.4572 24 1 2.2089 1.6980 1.0214 25 1 3.2136 2.0429 -1.6767 26 1 4.1470 1.6455 -0.2024 27 1 3.8123 -0.1200 -2.3428 28 1 4.1140 -0.6532 -0.6579 29 1 2.7035 -2.4527 -0.3066 30 1 1.0038 -2.5053 -0.8322 31 1 1.7740 -2.5309 -3.1034 32 1 3.3034 -4.4547 -1.4761 33 1 1.5952 -4.6541 -1.9344 34 1 2.2300 -4.5931 -4.3302 35 1 3.9385 -4.3938 -3.8726 36 1 3.8859 -8.9122 -5.1744 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226053275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:16 Heat of formation + Delta-G solvation = -28.658385 kcal Electronic energy + Delta-G solvation = -14089.414418 eV Core-core repulsion = 11799.858772 eV Total energy + Delta-G solvation = -2289.555646 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.13036 -37.35243 -34.98745 -33.04786 -32.55157 -29.94998 -26.75339 -26.20430 -24.23605 -22.39266 -21.70662 -21.06056 -18.96028 -17.03447 -16.93423 -16.34237 -16.18204 -15.64331 -14.98103 -14.78713 -14.60413 -14.51077 -14.36183 -13.41820 -13.23361 -12.95321 -12.85031 -12.48495 -12.26252 -12.17833 -12.03912 -11.79924 -11.62474 -11.51463 -11.41936 -11.37762 -10.76750 -9.45786 -9.29152 -8.29757 -6.34702 1.38324 1.39555 1.52240 2.37361 2.81083 3.05915 3.56313 3.74767 3.81153 4.06462 4.18890 4.33446 4.41359 4.49424 4.51613 4.53252 4.61263 4.76775 4.80679 4.93403 4.95493 5.01196 5.05003 5.11476 5.25984 5.30657 5.35060 5.49017 5.62533 5.93299 6.03979 6.16540 6.25389 6.51935 6.74024 7.30306 8.87131 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055543 B = 0.005312 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.995728 B = 5269.951054 C = 5512.970322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.536 5.536 3 C 0.037 3.963 4 C -0.129 4.129 5 C -0.108 4.108 6 C 0.074 3.926 7 H 0.054 0.946 8 C 0.080 3.920 9 N -0.688 5.688 10 C 0.089 3.911 11 C -0.003 4.003 12 C -0.536 4.536 13 H 0.030 0.970 14 C 0.005 3.995 15 N -0.952 5.952 16 Si 0.956 3.044 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.246 1.246 20 H 0.032 0.968 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.024 0.976 31 H 0.341 0.659 32 H 0.054 0.946 33 H 0.015 0.985 34 H 0.021 0.979 35 H 0.023 0.977 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.387 22.104 5.632 23.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.261 5.261 3 C -0.091 4.091 4 C -0.167 4.167 5 C -0.146 4.146 6 C -0.035 4.035 7 H 0.072 0.928 8 C -0.050 4.050 9 N -0.319 5.319 10 C -0.040 4.040 11 C -0.041 4.041 12 C -0.574 4.574 13 H 0.049 0.951 14 C -0.192 4.192 15 N -0.592 5.592 16 Si 0.779 3.221 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.169 1.169 20 H 0.050 0.950 21 H 0.099 0.901 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.159 0.841 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.537 21.804 6.144 22.928 hybrid contribution -1.089 -0.404 -1.153 1.637 sum -4.626 21.401 4.990 22.456 Atomic orbital electron populations 1.22547 0.87222 1.02256 1.01242 1.64553 1.08846 1.15874 1.36839 1.22895 0.96182 0.88790 1.01205 1.22434 0.97806 0.96568 0.99922 1.22366 0.95108 0.95510 1.01644 1.22633 0.96462 0.93290 0.91100 0.92828 1.21713 0.98188 0.93426 0.91635 1.60391 1.54607 1.09865 1.07061 1.21604 0.98220 0.85955 0.98248 1.19429 0.96796 0.93278 0.94587 1.21423 1.46227 0.92628 0.97168 0.95149 1.26022 0.94420 0.95237 1.03495 1.70070 1.49596 1.06865 1.32705 0.85569 0.79598 0.79035 0.77859 1.19208 1.20938 1.16920 0.94984 0.90114 0.91927 0.92988 0.89739 0.90566 0.90174 0.90870 0.91964 0.91665 0.95824 0.84115 0.92734 0.96721 0.96095 0.95852 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.28 127.69 1.18 1.47 16 2 N -0.54 -11.56 5.25 -884.24 -4.64 -16.19 16 3 C 0.04 0.63 6.70 86.44 0.58 1.21 16 4 C -0.13 -2.19 6.93 31.47 0.22 -1.97 16 5 C -0.11 -2.42 6.42 31.80 0.20 -2.21 16 6 C 0.07 1.74 2.52 45.26 0.11 1.85 16 7 H 0.05 1.25 7.92 -2.38 -0.02 1.23 16 8 C 0.08 2.29 5.38 86.30 0.46 2.75 16 9 N -0.69 -22.57 6.39 -513.90 -3.28 -25.85 16 10 C 0.09 3.64 5.62 86.30 0.48 4.13 16 11 C 0.00 -0.15 4.30 29.85 0.13 -0.02 16 12 C -0.54 -31.67 9.66 25.60 0.25 -31.42 16 13 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 14 C 0.01 0.30 5.47 84.65 0.46 0.76 16 15 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 16 Si 0.96 44.91 27.47 68.60 1.88 46.80 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.25 -10.68 6.54 99.48 0.65 -10.02 16 20 H 0.03 0.54 7.99 -2.39 -0.02 0.52 16 21 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.06 1.22 7.43 -2.39 -0.02 1.21 16 23 H 0.05 0.78 7.76 -2.39 -0.02 0.77 16 24 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.06 1.55 7.95 -2.39 -0.02 1.53 16 29 H 0.06 2.02 7.99 -2.39 -0.02 2.00 16 30 H 0.02 0.68 7.38 -2.39 -0.02 0.66 16 31 H 0.34 10.32 8.79 -89.69 -0.79 9.53 16 32 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 35 H 0.02 1.11 7.57 -2.39 -0.02 1.09 16 36 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -65.41 287.36 -1.47 -66.87 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.18 Total: 12.11 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 4.09 Total: -23.45 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -7.62 Total: -102.33 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.80 kcal Total: -65.41 -1.47 -66.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226053275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.216 kcal (2) G-P(sol) polarization free energy of solvation -65.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds