Wall clock time and date at job start Mon Mar 30 2020 02:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47001 * 2 1 4 4 C 1.36936 * 120.00373 * 265.79429 * 3 2 1 5 5 H 1.07997 * 119.99983 * 146.22010 * 4 3 2 6 6 C 1.38811 * 120.00052 * 326.21873 * 4 3 2 7 7 N 1.31622 * 120.00080 * 337.68179 * 6 4 3 8 8 Si 1.86799 * 120.00128 * 157.67584 * 6 4 3 9 9 H 1.48497 * 109.47075 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47100 * 120.00040 * 8 6 4 11 11 H 1.48500 * 109.47317 * 240.00334 * 8 6 4 12 12 C 1.46503 * 119.99987 * 85.79854 * 3 2 1 13 13 C 1.53005 * 109.47308 * 89.99515 * 12 3 2 14 14 N 1.46888 * 109.47182 * 180.02562 * 13 12 3 15 15 C 1.48529 * 111.00496 * 52.60305 * 14 13 12 16 16 C 1.54934 * 103.23060 * 159.72054 * 15 14 13 17 17 C 1.54596 * 102.92076 * 322.58705 * 16 15 14 18 18 C 1.47908 * 111.00203 * 170.00152 * 14 13 12 19 19 H 1.09001 * 109.46951 * 299.99536 * 1 2 3 20 20 H 1.08998 * 109.47643 * 59.99783 * 1 2 3 21 21 H 1.09000 * 109.47342 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46951 * 240.00464 * 2 1 3 23 23 H 1.08993 * 109.47247 * 120.00473 * 2 1 3 24 24 H 0.97000 * 119.99770 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46615 * 329.99927 * 12 3 2 26 26 H 1.08991 * 109.47333 * 209.99965 * 12 3 2 27 27 H 1.09005 * 109.46593 * 59.99760 * 13 12 3 28 28 H 1.09002 * 109.46839 * 300.00679 * 13 12 3 29 29 H 1.09000 * 110.66901 * 278.15879 * 15 14 13 30 30 H 1.09007 * 110.66132 * 41.28735 * 15 14 13 31 31 H 1.09009 * 110.72366 * 204.22892 * 16 15 14 32 32 H 1.08996 * 110.72689 * 80.94790 * 16 15 14 33 33 H 1.09000 * 110.30946 * 263.03959 * 17 16 15 34 34 H 1.09006 * 110.30468 * 140.87383 * 17 16 15 35 35 H 1.08996 * 109.91466 * 333.51231 * 18 14 13 36 36 H 1.09000 * 109.91405 * 94.60362 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3285 1.9978 -1.1827 5 1 2.1594 3.0580 -1.2995 6 6 2.8604 1.2601 -2.2314 7 7 3.4694 0.1184 -1.9905 8 14 2.7117 1.8876 -3.9845 9 1 1.9890 3.1849 -3.9863 10 1 4.0678 2.0763 -4.5595 11 1 1.9605 0.9009 -4.8014 12 6 2.1748 2.1028 1.2653 13 6 3.5856 1.8744 1.8116 14 7 3.7423 2.5974 3.0806 15 6 2.6513 2.2531 4.0278 16 6 3.2394 2.6493 5.4053 17 6 4.7277 2.2528 5.2727 18 6 5.0001 2.2135 3.7576 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 3.8408 -0.3972 -2.7234 25 1 1.4428 1.7367 1.9852 26 1 2.0181 3.1683 1.0978 27 1 4.3176 2.2404 1.0916 28 1 3.7422 0.8088 1.9792 29 1 1.7553 2.8346 3.8104 30 1 2.4356 1.1851 3.9943 31 1 2.7599 2.0859 6.2059 32 1 3.1394 3.7216 5.5735 33 1 4.8983 1.2705 5.7134 34 1 5.3620 2.9986 5.7520 35 1 5.2903 1.2064 3.4585 36 1 5.7902 2.9191 3.5010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230073945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:56 Heat of formation + Delta-G solvation = 17.706627 kcal Electronic energy + Delta-G solvation = -14719.964466 eV Core-core repulsion = 12432.419357 eV Total energy + Delta-G solvation = -2287.545109 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.58540 -35.88424 -32.44450 -31.18554 -29.41490 -28.63247 -26.51810 -23.83082 -22.44867 -20.84302 -20.46456 -19.32827 -16.61901 -15.70802 -15.50951 -14.68666 -14.15240 -13.81146 -13.53523 -13.17752 -12.67739 -12.36069 -12.17984 -11.71954 -11.43035 -11.19573 -11.16409 -10.92453 -10.78640 -10.68922 -10.57108 -10.38060 -10.21347 -9.84633 -9.75118 -9.52110 -8.44328 -7.93203 -6.58212 -5.74724 -3.27710 3.38463 3.47002 3.50305 4.39470 4.57147 4.89023 4.91274 5.13664 5.36524 5.51939 5.64273 5.70778 5.89448 5.93838 5.97030 6.01392 6.12407 6.22526 6.27620 6.33307 6.38242 6.49778 6.57615 6.67580 6.88584 6.91920 7.07730 7.30088 7.39615 7.60465 7.78950 7.87329 8.55092 9.23723 9.87579 10.43665 11.26075 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040733 B = 0.007681 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.245533 B = 3644.583317 C = 3981.214855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 N -0.585 5.585 4 C -0.252 4.252 5 H 0.063 0.937 6 C 0.006 3.994 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.291 1.291 11 H -0.289 1.289 12 C 0.152 3.848 13 C 0.032 3.968 14 N -0.519 5.519 15 C 0.035 3.965 16 C -0.124 4.124 17 C -0.130 4.130 18 C 0.034 3.966 19 H 0.031 0.969 20 H 0.049 0.951 21 H 0.033 0.967 22 H 0.099 0.901 23 H 0.016 0.984 24 H 0.253 0.747 25 H 0.033 0.967 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.025 0.975 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 1.839 11.280 11.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.012 3.988 3 N -0.306 5.306 4 C -0.382 4.382 5 H 0.081 0.919 6 C -0.194 4.194 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.218 1.218 11 H -0.215 1.215 12 C 0.024 3.976 13 C -0.098 4.098 14 N -0.244 5.244 15 C -0.093 4.093 16 C -0.162 4.162 17 C -0.168 4.168 18 C -0.094 4.094 19 H 0.050 0.950 20 H 0.068 0.932 21 H 0.052 0.948 22 H 0.117 0.883 23 H 0.034 0.966 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.044 0.956 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.477 2.281 11.008 11.252 hybrid contribution 0.115 -0.757 -0.792 1.102 sum -0.362 1.524 10.216 10.336 Atomic orbital electron populations 1.22308 1.00937 0.98613 1.00369 1.20936 0.89775 0.86540 1.01593 1.43942 1.73880 1.11779 1.00971 1.19162 1.35496 0.94013 0.89534 0.91901 1.25089 0.97175 0.97934 0.99168 1.70001 1.36900 1.15949 1.30574 0.86317 0.77399 0.78452 0.85202 1.20108 1.21755 1.21524 1.20921 0.91841 0.96623 0.88169 1.23095 1.02457 0.94860 0.89417 1.64857 1.01047 1.54733 1.03747 1.23186 0.95892 0.98862 0.91334 1.22493 0.95217 1.01488 0.97036 1.22388 0.97002 1.01103 0.96317 1.22848 0.94154 0.99463 0.92939 0.94968 0.93226 0.94769 0.88326 0.96578 0.93721 0.94873 0.93271 0.90468 0.95631 0.90177 0.94107 0.91632 0.91030 0.91993 0.91470 0.94099 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 10.24 37.16 0.38 -3.01 16 2 C 0.14 3.34 5.97 -4.04 -0.02 3.31 16 3 N -0.58 -14.86 2.45 -173.24 -0.43 -15.28 16 4 C -0.25 -6.99 9.49 -15.06 -0.14 -7.13 16 5 H 0.06 1.75 7.92 -52.49 -0.42 1.33 16 6 C 0.01 0.16 4.93 -17.43 -0.09 0.07 16 7 N -0.89 -25.80 11.32 55.49 0.63 -25.17 16 8 Si 0.90 21.80 29.61 -169.99 -5.03 16.77 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 C 0.15 3.32 5.35 -4.04 -0.02 3.30 16 13 C 0.03 0.66 5.35 -3.83 -0.02 0.64 16 14 N -0.52 -9.06 5.40 -230.46 -1.24 -10.30 16 15 C 0.04 0.53 5.10 -1.90 -0.01 0.52 16 16 C -0.12 -1.50 7.06 -24.87 -0.18 -1.67 16 17 C -0.13 -1.57 6.93 -25.38 -0.18 -1.75 16 18 C 0.03 0.52 6.70 -2.75 -0.02 0.50 16 19 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 21 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.10 2.69 5.32 -51.93 -0.28 2.42 16 23 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 24 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.03 0.67 6.72 -51.93 -0.35 0.32 16 26 H 0.05 1.09 8.04 -51.93 -0.42 0.68 16 27 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 28 H 0.03 0.57 7.81 -51.93 -0.41 0.16 16 29 H 0.08 1.18 7.66 -51.93 -0.40 0.78 16 30 H 0.04 0.64 8.00 -51.92 -0.42 0.22 16 31 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.65 7.57 -51.93 -0.39 0.26 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 285.95 15.07 4.31 4.31 Total: -1.00 -28.78 285.95 -8.49 -37.27 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -6.43 Total: -2.38 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.29 Total: -5.22 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -1.04 Total: -50.76 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.78 -8.49 -37.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230073945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.977 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds