Wall clock time and date at job start Mon Mar 30 2020 02:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47001 * 2 1 4 4 C 1.36936 * 120.00373 * 265.79429 * 3 2 1 5 5 H 1.07997 * 119.99983 * 146.22010 * 4 3 2 6 6 C 1.38811 * 120.00052 * 326.21873 * 4 3 2 7 7 N 1.31622 * 120.00080 * 337.68179 * 6 4 3 8 8 Si 1.86799 * 120.00128 * 157.67584 * 6 4 3 9 9 H 1.48497 * 109.47075 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47100 * 120.00040 * 8 6 4 11 11 H 1.48500 * 109.47317 * 240.00334 * 8 6 4 12 12 C 1.46503 * 119.99987 * 85.79854 * 3 2 1 13 13 C 1.53005 * 109.47308 * 89.99515 * 12 3 2 14 14 N 1.46888 * 109.47182 * 180.02562 * 13 12 3 15 15 C 1.48529 * 111.00496 * 52.60305 * 14 13 12 16 16 C 1.54934 * 103.23060 * 159.72054 * 15 14 13 17 17 C 1.54596 * 102.92076 * 322.58705 * 16 15 14 18 18 C 1.47908 * 111.00203 * 170.00152 * 14 13 12 19 19 H 1.09001 * 109.46951 * 299.99536 * 1 2 3 20 20 H 1.08998 * 109.47643 * 59.99783 * 1 2 3 21 21 H 1.09000 * 109.47342 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46951 * 240.00464 * 2 1 3 23 23 H 1.08993 * 109.47247 * 120.00473 * 2 1 3 24 24 H 0.97000 * 119.99770 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46615 * 329.99927 * 12 3 2 26 26 H 1.08991 * 109.47333 * 209.99965 * 12 3 2 27 27 H 1.09005 * 109.46593 * 59.99760 * 13 12 3 28 28 H 1.09002 * 109.46839 * 300.00679 * 13 12 3 29 29 H 1.09000 * 110.66901 * 278.15879 * 15 14 13 30 30 H 1.09007 * 110.66132 * 41.28735 * 15 14 13 31 31 H 1.09009 * 110.72366 * 204.22892 * 16 15 14 32 32 H 1.08996 * 110.72689 * 80.94790 * 16 15 14 33 33 H 1.09000 * 110.30946 * 263.03959 * 17 16 15 34 34 H 1.09006 * 110.30468 * 140.87383 * 17 16 15 35 35 H 1.08996 * 109.91466 * 333.51231 * 18 14 13 36 36 H 1.09000 * 109.91405 * 94.60362 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3285 1.9978 -1.1827 5 1 2.1594 3.0580 -1.2995 6 6 2.8604 1.2601 -2.2314 7 7 3.4694 0.1184 -1.9905 8 14 2.7117 1.8876 -3.9845 9 1 1.9890 3.1849 -3.9863 10 1 4.0678 2.0763 -4.5595 11 1 1.9605 0.9009 -4.8014 12 6 2.1748 2.1028 1.2653 13 6 3.5856 1.8744 1.8116 14 7 3.7423 2.5974 3.0806 15 6 2.6513 2.2531 4.0278 16 6 3.2394 2.6493 5.4053 17 6 4.7277 2.2528 5.2727 18 6 5.0001 2.2135 3.7576 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 3.8408 -0.3972 -2.7234 25 1 1.4428 1.7367 1.9852 26 1 2.0181 3.1683 1.0978 27 1 4.3176 2.2404 1.0916 28 1 3.7422 0.8088 1.9792 29 1 1.7553 2.8346 3.8104 30 1 2.4356 1.1851 3.9943 31 1 2.7599 2.0859 6.2059 32 1 3.1394 3.7216 5.5735 33 1 4.8983 1.2705 5.7134 34 1 5.3620 2.9986 5.7520 35 1 5.2903 1.2064 3.4585 36 1 5.7902 2.9191 3.5010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230073945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:56 Heat of formation + Delta-G solvation = -0.028443 kcal Electronic energy + Delta-G solvation = -14720.733516 eV Core-core repulsion = 12432.419357 eV Total energy + Delta-G solvation = -2288.314159 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.90579 -37.74839 -34.09863 -33.04641 -31.09007 -29.84279 -28.26411 -25.73467 -24.07016 -22.38067 -21.66405 -20.98127 -18.63422 -17.10061 -16.86650 -16.58448 -15.85445 -15.56838 -15.05534 -14.65894 -14.24534 -14.02668 -13.72285 -13.30033 -13.11290 -12.81492 -12.71553 -12.48325 -12.28831 -12.20732 -12.03940 -11.99062 -11.79606 -11.60691 -11.43808 -11.36235 -10.53197 -9.35977 -8.63979 -7.84477 -5.41931 1.44667 1.47557 1.58259 2.50349 3.05746 3.23677 3.72297 3.83563 3.87533 4.11114 4.28297 4.38694 4.49075 4.52845 4.62261 4.70959 4.76657 4.88561 4.91663 4.93090 5.00602 5.06968 5.09276 5.12373 5.23398 5.31851 5.35790 5.48760 5.65860 5.84119 6.04877 6.10793 6.45267 7.15280 7.85404 8.36099 9.13305 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040733 B = 0.007681 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.245533 B = 3644.583317 C = 3981.214855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.136 3.864 3 N -0.601 5.601 4 C -0.264 4.264 5 H 0.057 0.943 6 C -0.041 4.041 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.269 1.269 10 H -0.292 1.292 11 H -0.287 1.287 12 C 0.156 3.844 13 C 0.053 3.947 14 N -0.527 5.527 15 C 0.029 3.971 16 C -0.115 4.115 17 C -0.123 4.123 18 C 0.027 3.973 19 H 0.047 0.953 20 H 0.035 0.965 21 H 0.059 0.941 22 H 0.068 0.932 23 H 0.018 0.982 24 H 0.251 0.749 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.006 0.994 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.027 0.973 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.280 2.367 12.714 12.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.010 3.990 3 N -0.322 5.322 4 C -0.394 4.394 5 H 0.075 0.925 6 C -0.237 4.237 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.219 1.219 11 H -0.213 1.213 12 C 0.030 3.970 13 C -0.077 4.077 14 N -0.253 5.253 15 C -0.099 4.099 16 C -0.153 4.153 17 C -0.161 4.161 18 C -0.101 4.101 19 H 0.066 0.934 20 H 0.054 0.946 21 H 0.078 0.922 22 H 0.086 0.914 23 H 0.036 0.964 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.024 0.976 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.217 2.819 12.469 12.841 hybrid contribution 0.362 -0.912 -1.167 1.525 sum -0.855 1.908 11.301 11.493 Atomic orbital electron populations 1.22119 0.97970 1.00328 1.00400 1.20886 0.92080 0.85833 1.00159 1.44158 1.74313 1.12209 1.01537 1.19352 1.35240 0.93984 0.90872 0.92527 1.25780 0.97123 0.98312 1.02533 1.70131 1.37870 1.17092 1.31343 0.85347 0.77100 0.78132 0.80706 1.19296 1.21863 1.21315 1.20929 0.92819 0.95928 0.87356 1.22645 1.00678 0.93704 0.90718 1.64807 1.03097 1.54113 1.03238 1.23305 0.95366 0.98593 0.92587 1.22491 0.94828 1.02409 0.95584 1.22383 0.97487 1.02601 0.93600 1.22961 0.93125 0.98663 0.95317 0.93413 0.94580 0.92224 0.91396 0.96396 0.93970 0.92827 0.93841 0.94101 0.97553 0.89937 0.94747 0.89187 0.90184 0.90746 0.89466 0.95446 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.98 10.24 71.98 0.74 -5.24 16 2 C 0.14 6.63 5.97 86.38 0.52 7.14 16 3 N -0.60 -30.84 2.45 -702.02 -1.72 -32.56 16 4 C -0.26 -14.85 9.49 84.03 0.80 -14.05 16 5 H 0.06 3.19 7.92 -2.91 -0.02 3.17 16 6 C -0.04 -2.30 4.93 84.86 0.42 -1.88 16 7 N -0.92 -54.44 11.32 21.65 0.25 -54.19 16 8 Si 0.96 45.30 29.61 68.60 2.03 47.33 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 C 0.16 6.84 5.35 86.38 0.46 7.31 16 13 C 0.05 2.28 5.35 86.31 0.46 2.74 16 14 N -0.53 -18.15 5.40 -883.04 -4.76 -22.92 16 15 C 0.03 0.82 5.10 86.65 0.44 1.26 16 16 C -0.12 -2.40 7.06 31.80 0.22 -2.17 16 17 C -0.12 -2.61 6.93 31.47 0.22 -2.39 16 18 C 0.03 0.81 6.70 86.44 0.58 1.39 16 19 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 20 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 21 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 22 H 0.07 3.78 5.32 -2.39 -0.01 3.77 16 23 H 0.02 0.83 8.10 -2.39 -0.02 0.82 16 24 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 25 H 0.05 2.11 6.72 -2.39 -0.02 2.10 16 26 H 0.04 1.94 8.04 -2.39 -0.02 1.92 16 27 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.01 0.29 7.81 -2.39 -0.02 0.27 16 29 H 0.08 2.27 7.66 -2.39 -0.02 2.25 16 30 H 0.03 1.02 8.00 -2.38 -0.02 1.00 16 31 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.03 0.87 7.57 -2.39 -0.02 0.85 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -62.11 285.95 1.66 -60.46 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.01 Total: 7.78 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 4.86 Total: -5.90 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -6.24 Total: -109.67 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -62.11 1.66 -60.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230073945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.428 kcal (2) G-P(sol) polarization free energy of solvation -62.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds