Wall clock time and date at job start Mon Mar 30 2020 02:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99994 * 2 1 4 4 C 1.53006 * 109.46626 * 293.95302 * 3 2 1 5 5 C 1.50699 * 109.46866 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99963 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00270 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99835 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00496 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47092 * 90.00048 * 9 7 5 11 11 H 1.48498 * 109.47340 * 210.00299 * 9 7 5 12 12 H 1.48501 * 109.47391 * 330.00372 * 9 7 5 13 13 C 1.46901 * 111.00062 * 123.94970 * 2 1 3 14 14 C 1.53005 * 109.47258 * 66.04881 * 13 2 1 15 15 H 1.09004 * 110.36451 * 297.34976 * 14 13 2 16 16 C 1.54375 * 110.41197 * 174.99784 * 14 13 2 17 17 C 1.54257 * 105.06073 * 217.36653 * 16 14 13 18 18 C 1.54383 * 105.05907 * 0.02562 * 17 16 14 19 19 N 1.48556 * 110.40695 * 59.82395 * 14 13 2 20 20 H 1.08992 * 109.47140 * 60.00797 * 1 2 3 21 21 H 1.09002 * 109.46408 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47025 * 299.99832 * 1 2 3 23 23 H 1.08993 * 109.47737 * 173.95434 * 3 2 1 24 24 H 1.09000 * 109.47263 * 53.94996 * 3 2 1 25 25 H 1.09000 * 109.47050 * 299.99824 * 4 3 2 26 26 H 1.09001 * 109.46801 * 59.99937 * 4 3 2 27 27 H 0.96992 * 120.00038 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47307 * 186.04689 * 13 2 1 29 29 H 1.09000 * 109.47103 * 306.04587 * 13 2 1 30 30 H 1.08997 * 110.32786 * 336.26689 * 16 14 13 31 31 H 1.09005 * 110.32348 * 98.37150 * 16 14 13 32 32 H 1.08999 * 110.32053 * 118.89907 * 17 16 14 33 33 H 1.08998 * 110.32603 * 241.00041 * 17 16 14 34 34 H 1.09005 * 110.40886 * 142.62932 * 18 17 16 35 35 H 1.09000 * 110.40993 * 264.95213 * 18 17 16 36 36 H 1.00898 * 111.00297 * 277.81885 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3184 5 6 2.1709 3.4645 -1.3182 6 1 2.7183 3.8328 -0.4631 7 6 1.9658 4.2816 -2.4095 8 7 1.2988 3.8333 -3.4506 9 14 2.6338 6.0260 -2.4091 10 1 4.0062 6.0306 -2.9763 11 1 1.7544 6.8932 -3.2336 12 1 2.6720 6.5412 -1.0168 13 6 1.9955 -0.7659 1.1376 14 6 1.6316 -2.2426 0.9705 15 1 0.5490 -2.3697 0.9777 16 6 2.2802 -3.0869 2.0884 17 6 2.6949 -4.4061 1.4050 18 6 2.2624 -4.2477 -0.0686 19 7 2.2104 -2.7795 -0.2879 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.0797 1.3445 0.1082 24 1 1.5611 1.9274 0.8309 25 1 2.0658 1.5014 -2.1492 26 1 0.5471 2.0843 -1.4265 27 1 1.1547 4.4080 -4.2185 28 1 3.0798 -0.6610 1.1757 29 1 1.5611 -0.3871 2.0628 30 1 3.1561 -2.5763 2.4887 31 1 1.5597 -3.2805 2.8830 32 1 3.7743 -4.5431 1.4698 33 1 2.1788 -5.2491 1.8645 34 1 2.9965 -4.7058 -0.7315 35 1 1.2796 -4.6920 -0.2261 36 1 1.6277 -2.5525 -1.0797 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234272089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:14 Heat of formation + Delta-G solvation = -4.837241 kcal Electronic energy + Delta-G solvation = -14292.842973 eV Core-core repulsion = 12004.320289 eV Total energy + Delta-G solvation = -2288.522684 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.79170 -36.48728 -33.02351 -30.63117 -30.15194 -28.77370 -26.35806 -24.77652 -22.50249 -20.91013 -19.86553 -19.71220 -16.79731 -16.30395 -15.34744 -14.91147 -14.54982 -14.39865 -13.81658 -13.27282 -12.88877 -12.41834 -12.16962 -12.00727 -11.67892 -11.43294 -11.28020 -11.19593 -10.98538 -10.89898 -10.80593 -10.50470 -10.40226 -9.78285 -9.29359 -9.06510 -8.35676 -8.28064 -7.60668 -5.94904 -3.96844 3.35409 3.41237 3.44478 4.27997 4.44106 4.56752 4.79230 4.87316 5.03524 5.19832 5.40993 5.47714 5.56198 5.61295 5.73303 5.79639 5.88859 5.90217 5.95774 6.03291 6.08811 6.27849 6.34357 6.49940 6.59154 6.94539 7.05835 7.55293 7.58113 7.66380 7.86582 7.97625 8.15181 8.49692 9.10623 9.66435 11.16596 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.063358 B = 0.005403 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.823931 B = 5181.168165 C = 5244.806166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.535 5.535 3 C 0.065 3.935 4 C 0.028 3.972 5 C -0.521 4.521 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.069 3.931 14 C 0.071 3.929 15 H 0.044 0.956 16 C -0.121 4.121 17 C -0.123 4.123 18 C 0.032 3.968 19 N -0.646 5.646 20 H 0.077 0.923 21 H 0.051 0.949 22 H 0.016 0.984 23 H 0.060 0.940 24 H 0.016 0.984 25 H 0.025 0.975 26 H 0.016 0.984 27 H 0.260 0.740 28 H 0.077 0.923 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.322 -14.208 9.302 16.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.259 5.259 3 C -0.062 4.062 4 C -0.009 4.009 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.060 4.060 14 C -0.039 4.039 15 H 0.062 0.938 16 C -0.160 4.160 17 C -0.161 4.161 18 C -0.098 4.098 19 N -0.276 5.276 20 H 0.096 0.904 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.079 0.921 24 H 0.035 0.965 25 H 0.043 0.957 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.488 -14.209 8.819 16.730 hybrid contribution -0.959 1.117 0.598 1.589 sum -0.471 -13.092 9.416 16.133 Atomic orbital electron populations 1.22414 0.88747 1.00080 1.01199 1.62054 1.06826 1.15884 1.41153 1.22327 0.98566 0.85140 1.00181 1.19085 0.96764 0.93954 0.91088 1.21214 1.35013 0.97866 1.01858 0.92870 1.24986 0.95319 0.98413 0.95585 1.69975 1.40925 1.36431 1.06010 0.86607 0.78869 0.84666 0.77915 1.20636 1.21272 1.19972 1.22088 1.00622 0.91615 0.91689 1.22481 0.96240 0.94762 0.90413 0.93763 1.22325 1.00743 0.95696 0.97239 1.22262 1.01540 0.97159 0.95135 1.22909 0.99463 0.90724 0.96690 1.63526 1.52967 1.06497 1.04603 0.90415 0.93070 0.96569 0.92139 0.96524 0.95652 0.96606 0.93063 0.90464 0.95566 0.90954 0.91798 0.91221 0.91885 0.90476 0.94893 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.13 60.07 0.55 0.96 16 2 N -0.54 -9.98 4.63 -242.91 -1.12 -11.11 16 3 C 0.06 1.42 4.90 -3.82 -0.02 1.40 16 4 C 0.03 0.76 4.90 -27.88 -0.14 0.62 16 5 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 6 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 9 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.07 1.07 4.58 -3.82 -0.02 1.05 16 14 C 0.07 0.95 2.95 -66.07 -0.19 0.75 16 15 H 0.04 0.58 6.65 -51.93 -0.35 0.24 16 16 C -0.12 -1.33 6.55 -25.35 -0.17 -1.49 16 17 C -0.12 -1.22 7.00 -25.35 -0.18 -1.40 16 18 C 0.03 0.35 7.47 -2.19 -0.02 0.34 16 19 N -0.65 -8.99 7.15 -102.76 -0.73 -9.72 16 20 H 0.08 1.48 6.47 -51.93 -0.34 1.15 16 21 H 0.05 0.75 6.37 -51.93 -0.33 0.42 16 22 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 23 H 0.06 1.33 7.93 -51.93 -0.41 0.92 16 24 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.02 0.44 6.55 -51.93 -0.34 0.10 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.08 1.26 7.88 -51.93 -0.41 0.85 16 29 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.35 5.01 8.92 -39.29 -0.35 4.66 16 LS Contribution 285.84 15.07 4.31 4.31 Total: -1.00 -30.37 285.84 -8.70 -39.07 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.27 Total: -1.37 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -0.59 Total: -11.56 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -1.12 Total: -47.40 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.37 -8.70 -39.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234272089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.228 kcal (2) G-P(sol) polarization free energy of solvation -30.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds