Wall clock time and date at job start Mon Mar 30 2020 02:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 111.00072 * 2 1 4 4 C 1.53000 * 109.46860 * 293.95420 * 3 2 1 5 5 C 1.50700 * 109.46806 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99875 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99711 * 179.97438 * 5 4 3 8 8 N 1.31504 * 120.00164 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99688 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47499 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47311 * 120.00314 * 9 7 5 12 12 H 1.48505 * 109.47086 * 240.00137 * 9 7 5 13 13 C 1.46905 * 110.99682 * 123.95094 * 2 1 3 14 14 C 1.53004 * 109.47193 * 75.81183 * 13 2 1 15 15 H 1.09000 * 110.01161 * 306.65471 * 14 13 2 16 16 C 1.54318 * 109.88757 * 67.76453 * 14 13 2 17 17 C 1.55432 * 103.04593 * 141.69054 * 16 14 13 18 18 C 1.54913 * 101.51783 * 324.36702 * 17 16 14 19 19 N 1.47437 * 109.88806 * 185.53667 * 14 13 2 20 20 H 1.08998 * 109.46934 * 301.85443 * 1 2 3 21 21 H 1.09004 * 109.46725 * 61.85726 * 1 2 3 22 22 H 1.09005 * 109.47022 * 181.85343 * 1 2 3 23 23 H 1.09003 * 109.47055 * 53.95102 * 3 2 1 24 24 H 1.09001 * 109.46800 * 173.94942 * 3 2 1 25 25 H 1.09003 * 109.46502 * 299.99719 * 4 3 2 26 26 H 1.08994 * 109.47613 * 59.99482 * 4 3 2 27 27 H 0.97000 * 120.00626 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47108 * 315.81747 * 13 2 1 29 29 H 1.08997 * 109.47036 * 195.81011 * 13 2 1 30 30 H 1.08994 * 110.70917 * 260.07563 * 16 14 13 31 31 H 1.09005 * 110.70385 * 23.31209 * 16 14 13 32 32 H 1.08994 * 111.10660 * 206.30042 * 17 16 14 33 33 H 1.08997 * 110.99957 * 82.38837 * 17 16 14 34 34 H 1.09000 * 110.37634 * 278.17697 * 18 17 16 35 35 H 1.09004 * 110.37257 * 155.94903 * 18 17 16 36 36 H 1.00896 * 111.00190 * 3.85728 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1721 3.4641 -1.3185 6 1 2.7201 3.8321 -0.4637 7 6 1.9671 4.2812 -2.4100 8 7 1.3003 3.8328 -3.4510 9 14 2.6379 6.0246 -2.4106 10 1 3.3467 6.2827 -1.1316 11 1 3.5844 6.1904 -3.5428 12 1 1.5161 6.9865 -2.5583 13 6 1.9954 -0.7660 1.1377 14 6 1.8481 -2.2627 0.8567 15 1 0.8153 -2.4933 0.5955 16 6 2.7859 -2.6750 -0.2974 17 6 3.2976 -4.0733 0.1488 18 6 3.4042 -3.8885 1.6832 19 7 2.2502 -3.0380 2.0446 20 1 -0.3633 0.5424 0.8729 21 1 -0.3633 0.4847 -0.9062 22 1 -0.3633 -1.0272 0.0332 23 1 1.5611 1.9274 0.8309 24 1 3.0798 1.3443 0.1083 25 1 2.0659 1.5014 -2.1491 26 1 0.5473 2.0844 -1.4266 27 1 1.1564 4.4075 -4.2191 28 1 1.4376 -0.5088 2.0381 29 1 3.0487 -0.5253 1.2815 30 1 2.2346 -2.7477 -1.2348 31 1 3.6148 -1.9731 -0.3899 32 1 4.2725 -4.2918 -0.2868 33 1 2.5764 -4.8513 -0.1016 34 1 4.3385 -3.3902 1.9414 35 1 3.3374 -4.8528 2.1870 36 1 2.4781 -2.4274 2.8148 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234272170.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:15 Heat of formation + Delta-G solvation = -28.305856 kcal Electronic energy + Delta-G solvation = -14311.184656 eV Core-core repulsion = 12021.644297 eV Total energy + Delta-G solvation = -2289.540360 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.03873 -37.96709 -35.16658 -32.28266 -31.10207 -30.22976 -27.82990 -26.51543 -24.04836 -22.02924 -21.62783 -21.14734 -18.62281 -17.12990 -17.02324 -16.49049 -16.35282 -15.78305 -15.05153 -14.72565 -14.25553 -14.08515 -13.90138 -13.31642 -13.21898 -12.91387 -12.81703 -12.62149 -12.51885 -12.34252 -11.98063 -11.87629 -11.72878 -11.55564 -11.32691 -11.24034 -10.55588 -9.40533 -9.17999 -8.20805 -6.32261 1.39766 1.40098 1.53346 2.39465 2.92680 3.12755 3.50325 3.82267 3.86116 3.90376 4.28540 4.30370 4.40082 4.44570 4.49912 4.63549 4.68966 4.74395 4.79830 4.97028 5.02599 5.05376 5.11983 5.13776 5.23789 5.40581 5.46578 5.64696 5.77779 5.91651 6.08342 6.26233 6.32382 6.45589 6.85200 7.37029 8.91597 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.056521 B = 0.005507 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.268346 B = 5083.552903 C = 5133.957509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.547 5.547 3 C 0.080 3.920 4 C 0.036 3.964 5 C -0.545 4.545 6 H 0.059 0.941 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.045 3.955 14 C 0.088 3.912 15 H 0.075 0.925 16 C -0.126 4.126 17 C -0.128 4.128 18 C 0.044 3.956 19 N -0.684 5.684 20 H 0.024 0.976 21 H 0.051 0.949 22 H 0.082 0.918 23 H 0.019 0.981 24 H 0.061 0.939 25 H -0.008 1.008 26 H -0.005 1.005 27 H 0.264 0.736 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.077 -13.008 9.853 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.271 5.271 3 C -0.047 4.047 4 C -0.001 4.001 5 C -0.583 4.583 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.791 3.209 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.203 1.203 13 C -0.084 4.084 14 C -0.022 4.022 15 H 0.093 0.907 16 C -0.164 4.164 17 C -0.166 4.166 18 C -0.085 4.085 19 N -0.314 5.314 20 H 0.042 0.958 21 H 0.070 0.930 22 H 0.101 0.899 23 H 0.037 0.963 24 H 0.079 0.921 25 H 0.010 0.990 26 H 0.014 0.986 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.684 -13.714 9.209 16.736 hybrid contribution 0.507 2.152 0.215 2.222 sum 3.191 -11.562 9.424 15.253 Atomic orbital electron populations 1.22371 0.87309 1.01869 1.00240 1.61920 1.08337 1.14108 1.42751 1.22008 0.98473 0.86782 0.97474 1.18917 0.95107 0.93649 0.92456 1.21657 1.35338 0.99025 1.02328 0.92281 1.25950 0.95380 1.03235 0.95009 1.70109 1.42038 1.38239 1.06784 0.85384 0.78210 0.78876 0.78471 1.18594 1.20313 1.20308 1.22665 0.99772 0.94313 0.91646 1.22119 0.99732 0.90029 0.90306 0.90680 1.22701 0.98722 0.96700 0.98312 1.22793 1.01948 0.96621 0.95241 1.22900 0.91744 0.98137 0.95712 1.62154 1.37223 1.24756 1.07290 0.95791 0.93009 0.89924 0.96265 0.92099 0.98963 0.98638 0.92732 0.94131 0.91426 0.91734 0.92428 0.89837 0.90706 0.93414 0.89340 0.84046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 9.12 127.69 1.16 2.19 16 2 N -0.55 -19.80 4.51 -922.40 -4.16 -23.96 16 3 C 0.08 3.45 4.88 86.30 0.42 3.87 16 4 C 0.04 1.96 4.90 29.85 0.15 2.11 16 5 C -0.55 -31.47 9.11 25.60 0.23 -31.24 16 6 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 7 C 0.00 0.13 5.46 84.66 0.46 0.59 16 8 N -0.93 -57.36 13.28 21.45 0.28 -57.07 16 9 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 10 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 13 C 0.05 1.29 4.13 86.30 0.36 1.64 16 14 C 0.09 2.23 3.61 45.26 0.16 2.39 16 15 H 0.08 2.04 6.70 -2.39 -0.02 2.02 16 16 C -0.13 -3.19 6.30 31.88 0.20 -2.99 16 17 C -0.13 -2.50 7.10 32.08 0.23 -2.27 16 18 C 0.04 0.80 7.56 86.78 0.66 1.46 16 19 N -0.68 -14.73 7.37 -482.36 -3.56 -18.29 16 20 H 0.02 0.78 8.13 -2.39 -0.02 0.76 16 21 H 0.05 2.02 6.56 -2.38 -0.02 2.00 16 22 H 0.08 2.37 6.65 -2.38 -0.02 2.35 16 23 H 0.02 0.82 8.11 -2.39 -0.02 0.80 16 24 H 0.06 2.56 7.83 -2.39 -0.02 2.54 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H 0.00 -0.27 6.59 -2.39 -0.02 -0.29 16 27 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 28 H 0.04 1.10 8.00 -2.39 -0.02 1.08 16 29 H 0.07 1.91 7.60 -2.39 -0.02 1.89 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.60 7.76 -2.38 -0.02 1.59 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.34 6.63 8.22 -89.70 -0.74 5.89 16 Total: -1.00 -63.68 285.24 -1.07 -64.76 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.30 Total: 10.27 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: 4.03 Total: -22.25 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -7.43 Total: -99.31 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -63.68 -1.07 -64.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234272170.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.450 kcal (2) G-P(sol) polarization free energy of solvation -63.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds