Wall clock time and date at job start Mon Mar 30 2020 02:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86798 * 119.99565 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99849 * 3 2 1 5 5 H 1.48501 * 109.47293 * 30.00300 * 3 2 1 6 6 H 1.48503 * 109.47052 * 149.99994 * 3 2 1 7 7 C 1.38628 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99656 * 179.97438 * 7 2 1 9 9 O 1.34800 * 119.99828 * 0.27811 * 7 2 1 10 10 C 1.35821 * 116.99495 * 179.72510 * 9 7 2 11 11 C 1.39519 * 120.09927 * 269.71596 * 10 9 7 12 12 N 1.39789 * 120.09884 * 0.02847 * 11 10 9 13 13 C 1.38732 * 119.80020 * 179.75025 * 11 10 9 14 14 C 1.38237 * 120.01376 * 0.55430 * 13 11 10 15 15 C 1.38289 * 120.21613 * 359.69728 * 14 13 11 16 16 C 1.38326 * 120.19295 * 0.02739 * 15 14 13 17 17 Cl 1.73601 * 120.01039 * 179.97438 * 16 15 14 18 18 H 0.96996 * 120.00435 * 359.97438 * 1 2 3 19 19 H 0.96996 * 120.00076 * 0.02562 * 12 11 10 20 20 H 0.97003 * 119.99336 * 179.97438 * 12 11 10 21 21 H 1.07997 * 119.99121 * 180.27715 * 13 11 10 22 22 H 1.08004 * 119.88944 * 179.72274 * 14 13 11 23 23 H 1.07997 * 119.90323 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4471 2.6527 0.7001 6 1 3.5473 1.4403 0.7001 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0010 9 8 1.3350 -2.3679 -0.0067 10 6 2.0749 -3.5069 -0.0127 11 6 2.4510 -4.0906 -1.2228 12 7 2.0681 -3.5045 -2.4328 13 6 3.2111 -5.2512 -1.2217 14 6 3.5840 -5.8324 -0.0241 15 6 3.2071 -5.2573 1.1757 16 6 2.4540 -4.0970 1.1848 17 17 1.9829 -3.3795 2.6937 18 1 -0.4850 0.8400 0.0004 19 1 1.5404 -2.6907 -2.4319 20 1 2.3308 -3.9114 -3.2732 21 1 3.5078 -5.7031 -2.1566 22 1 4.1720 -6.7383 -0.0256 23 1 3.5015 -5.7154 2.1083 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236353183.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:23 Heat of formation + Delta-G solvation = -10.000520 kcal Electronic energy + Delta-G solvation = -11917.704665 eV Core-core repulsion = 9564.449303 eV Total energy + Delta-G solvation = -2353.255362 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.10020 -36.15550 -35.64666 -33.59977 -31.87000 -29.13071 -27.75903 -24.73470 -21.89757 -21.34276 -17.95008 -16.79733 -16.42302 -16.00063 -14.47488 -14.02354 -13.91670 -13.69983 -13.43679 -12.31740 -11.78916 -11.54930 -11.32622 -11.20503 -10.99978 -10.35313 -10.25566 -9.92970 -9.81342 -9.59163 -8.18512 -7.80578 -6.82306 -6.03779 -3.72774 1.86501 2.10396 3.02221 3.26020 3.30906 3.34551 4.15935 4.43415 4.54796 5.27576 5.37252 5.41738 5.81050 5.86560 6.18313 6.49899 6.79551 6.90757 6.99623 7.28394 7.44356 8.07522 8.33358 8.44954 9.39347 10.10072 11.14661 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.032247 B = 0.012376 C = 0.010022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.099340 B = 2261.905074 C = 2793.223272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.032 3.968 3 Si 0.925 3.075 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.359 4.359 8 H 0.065 0.935 9 O -0.223 6.223 10 C 0.071 3.929 11 C 0.201 3.799 12 N -0.865 5.865 13 C -0.201 4.201 14 C -0.090 4.090 15 C -0.170 4.170 16 C -0.021 4.021 17 Cl -0.065 7.065 18 H 0.260 0.740 19 H 0.412 0.588 20 H 0.389 0.611 21 H 0.116 0.884 22 H 0.120 0.880 23 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.996 -7.957 -1.544 10.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.168 4.168 3 Si 0.752 3.248 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.436 4.436 8 H 0.083 0.917 9 O -0.135 6.135 10 C 0.021 3.979 11 C 0.094 3.906 12 N -0.404 5.404 13 C -0.225 4.225 14 C -0.109 4.109 15 C -0.192 4.192 16 C -0.049 4.049 17 Cl -0.036 7.036 18 H 0.070 0.930 19 H 0.243 0.757 20 H 0.216 0.784 21 H 0.134 0.866 22 H 0.138 0.862 23 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.593 -7.733 -1.371 9.642 hybrid contribution 0.508 1.007 -0.170 1.140 sum 6.101 -6.726 -1.541 9.211 Atomic orbital electron populations 1.70030 1.05303 1.26198 1.50843 1.24933 0.95662 0.97577 0.98611 0.85956 0.78901 0.81845 0.78083 1.20665 1.20784 1.19857 1.20864 0.90108 0.81060 1.51612 0.91699 1.84003 1.28786 1.09100 1.91604 1.18393 0.97759 0.92794 0.88958 1.18212 0.92980 0.92419 0.86947 1.42362 1.62194 1.32069 1.03734 1.20426 1.06090 0.97637 0.98317 1.20552 0.99793 0.99233 0.91369 1.20591 1.03388 0.96769 0.98408 1.21359 1.00223 0.96161 0.87155 1.98329 1.90978 1.83762 1.30526 0.93010 0.75667 0.78367 0.86560 0.86233 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.57 13.67 55.48 0.76 -25.81 14 2 C 0.03 0.89 5.49 -17.51 -0.10 0.80 14 3 Si 0.93 21.72 29.55 -169.99 -5.02 16.69 14 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 14 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 14 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 14 7 C -0.36 -10.11 9.80 30.88 0.30 -9.81 14 8 H 0.07 1.81 7.76 -52.49 -0.41 1.40 14 9 O -0.22 -6.17 8.39 -0.09 0.00 -6.17 14 10 C 0.07 1.68 5.61 -38.90 -0.22 1.46 14 11 C 0.20 4.01 6.77 -83.57 -0.57 3.44 14 12 N -0.86 -15.39 9.08 32.52 0.30 -15.09 14 13 C -0.20 -3.32 9.89 -39.40 -0.39 -3.71 14 14 C -0.09 -1.42 10.04 -39.56 -0.40 -1.81 14 15 C -0.17 -3.00 9.82 -39.53 -0.39 -3.39 14 16 C -0.02 -0.45 6.33 -39.35 -0.25 -0.70 14 17 Cl -0.06 -1.40 28.50 -51.86 -1.48 -2.88 14 18 H 0.26 7.35 8.31 -40.82 -0.34 7.01 14 19 H 0.41 8.27 8.18 -40.82 -0.33 7.94 14 20 H 0.39 5.33 8.84 -40.82 -0.36 4.97 14 21 H 0.12 1.56 8.06 -52.49 -0.42 1.13 14 22 H 0.12 1.44 8.06 -52.48 -0.42 1.02 14 23 H 0.12 1.82 8.06 -52.49 -0.42 1.39 14 LS Contribution 231.54 15.07 3.49 3.49 Total: -1.00 -31.21 231.54 -5.47 -36.68 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -1.51 Total: 6.81 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -2.00 Total: -13.72 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 1.05 Total: -40.90 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: 0.00 Total: -6.17 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -1.48 Total: -2.88 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -31.21 -5.47 -36.68 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236353183.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.679 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds