Wall clock time and date at job start Mon Mar 30 2020 02:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35631 * 117.00193 * 2 1 4 4 C 1.39591 * 119.54203 * 174.78074 * 3 2 1 5 5 C 1.38607 * 119.53118 * 179.97438 * 4 3 2 6 6 C 1.38510 * 118.64871 * 359.97438 * 5 4 3 7 7 Cl 1.73604 * 120.46731 * 179.97438 * 6 5 4 8 8 C 1.40718 * 119.06752 * 0.27531 * 6 5 4 9 9 C 1.41242 * 119.80840 * 179.70148 * 8 6 5 10 10 H 1.07998 * 120.00016 * 7.65546 * 9 8 6 11 11 C 1.40038 * 120.00254 * 187.65008 * 9 8 6 12 12 N 1.30753 * 119.99659 * 7.36819 * 11 9 8 13 13 Si 1.86798 * 120.00245 * 187.36650 * 11 9 8 14 14 H 1.48500 * 109.47052 * 84.99165 * 13 11 9 15 15 H 1.48500 * 109.47110 * 204.99101 * 13 11 9 16 16 H 1.48502 * 109.46990 * 324.99369 * 13 11 9 17 17 N 1.31775 * 119.54212 * 354.75068 * 3 2 1 18 18 H 1.09001 * 109.47113 * 304.72969 * 1 2 3 19 19 H 1.09008 * 109.46561 * 64.72424 * 1 2 3 20 20 H 1.08996 * 109.47719 * 184.71997 * 1 2 3 21 21 H 1.08002 * 120.23830 * 0.02562 * 4 3 2 22 22 H 1.08007 * 120.67630 * 179.97438 * 5 4 3 23 23 H 0.96994 * 119.99658 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 3.4349 1.2726 0.1105 5 6 4.0640 2.5077 0.1099 6 6 3.2868 3.6487 -0.0017 7 17 4.0254 5.2198 -0.0068 8 6 1.8896 3.5169 -0.1046 9 6 1.0816 4.6704 -0.2127 10 1 1.5392 5.6402 -0.3409 11 6 -0.3129 4.5565 -0.1540 12 7 -0.8630 3.4084 0.1441 13 14 -1.3870 6.0447 -0.5015 14 1 -1.6011 6.1696 -1.9657 15 1 -2.6970 5.8792 0.1780 16 1 -0.7168 7.2685 0.0069 17 7 1.3226 2.3057 -0.1049 18 1 -0.3633 0.5855 0.8446 19 1 -0.3633 0.4388 -0.9294 20 1 -0.3634 -1.0241 0.0846 21 1 4.0162 0.3663 0.1950 22 1 5.1383 2.5789 0.1948 23 1 -1.8289 3.3297 0.1851 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238335605.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:48 Heat of formation + Delta-G solvation = -36.888692 kcal Electronic energy + Delta-G solvation = -11988.703285 eV Core-core repulsion = 9634.281965 eV Total energy + Delta-G solvation = -2354.421320 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.73589 -38.48445 -36.77934 -35.52422 -32.51098 -31.26349 -28.62151 -26.93460 -23.54763 -23.11686 -19.72309 -18.64147 -16.93721 -16.86044 -16.67677 -16.56078 -15.00887 -14.92413 -14.24303 -14.01237 -13.28799 -12.98355 -12.86807 -12.81645 -12.62110 -12.38163 -11.97620 -11.64877 -11.41567 -11.03702 -10.18218 -9.78162 -9.05191 -8.48222 -6.61183 0.76083 0.94692 1.41192 1.52286 1.54582 1.80995 2.20145 2.58730 2.74095 3.72368 4.18557 4.40440 4.62131 4.63685 4.68152 4.84545 5.01322 5.16230 5.35293 5.56307 5.78880 6.08983 6.43090 6.61334 6.90673 7.87550 8.31538 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.022429 B = 0.016796 C = 0.009686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.095265 B = 1666.703479 C = 2890.092905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.331 6.331 3 C 0.315 3.685 4 C -0.324 4.324 5 C -0.013 4.013 6 C -0.234 4.234 7 Cl -0.092 7.092 8 C 0.260 3.740 9 C -0.440 4.440 10 H 0.099 0.901 11 C 0.030 3.970 12 N -0.741 5.741 13 Si 0.985 3.015 14 H -0.263 1.263 15 H -0.265 1.265 16 H -0.256 1.256 17 N -0.549 5.549 18 H 0.042 0.958 19 H 0.036 0.964 20 H 0.117 0.883 21 H 0.134 0.866 22 H 0.147 0.853 23 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 -0.233 -0.241 0.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.239 6.239 3 C 0.129 3.871 4 C -0.347 4.347 5 C -0.037 4.037 6 C -0.265 4.265 7 Cl -0.064 7.064 8 C 0.136 3.864 9 C -0.471 4.471 10 H 0.117 0.883 11 C -0.194 4.194 12 N -0.362 5.362 13 Si 0.805 3.195 14 H -0.188 1.188 15 H -0.189 1.189 16 H -0.180 1.180 17 N -0.278 5.278 18 H 0.061 0.939 19 H 0.055 0.945 20 H 0.136 0.864 21 H 0.152 0.848 22 H 0.164 0.836 23 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.502 -0.525 -0.256 0.770 hybrid contribution 0.273 0.706 -0.052 0.758 sum -0.228 0.180 -0.308 0.424 Atomic orbital electron populations 1.22668 0.77154 1.02500 1.01401 1.86058 1.23395 1.25818 1.88609 1.20477 0.89886 0.85717 0.91050 1.20507 0.91388 0.98243 1.24577 1.20914 0.99523 0.89774 0.93523 1.21677 0.93845 0.85663 1.25272 1.98180 1.82107 1.28228 1.97904 1.18376 0.88366 0.90776 0.88890 1.20096 0.91889 0.94055 1.41019 0.88263 1.26966 0.99745 1.00141 0.92556 1.70094 1.12832 1.26299 1.26960 0.85164 0.77117 0.77783 0.79433 1.18784 1.18898 1.17958 1.68369 1.36778 0.97004 1.25671 0.93904 0.94467 0.86444 0.84831 0.83559 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.26 10.39 113.37 1.18 3.43 14 2 O -0.33 -14.85 10.47 -89.44 -0.94 -15.79 14 3 C 0.32 15.72 7.49 85.03 0.64 16.36 14 4 C -0.32 -14.56 10.06 22.68 0.23 -14.33 14 5 C -0.01 -0.57 9.96 22.42 0.22 -0.35 14 6 C -0.23 -11.32 6.40 22.94 0.15 -11.17 14 7 Cl -0.09 -3.86 27.43 -2.72 -0.07 -3.94 14 8 C 0.26 14.06 6.52 40.20 0.26 14.32 14 9 C -0.44 -23.01 8.80 23.45 0.21 -22.80 14 10 H 0.10 4.95 6.69 -2.91 -0.02 4.93 14 11 C 0.03 1.45 5.47 85.29 0.47 1.92 14 12 N -0.74 -37.20 11.57 21.84 0.25 -36.95 14 13 Si 0.99 36.52 29.57 68.60 2.03 38.55 14 14 H -0.26 -9.57 7.11 99.48 0.71 -8.86 14 15 H -0.26 -9.24 7.11 99.48 0.71 -8.53 14 16 H -0.26 -9.27 7.11 99.48 0.71 -8.56 14 17 N -0.55 -29.79 6.82 -302.36 -2.06 -31.85 14 18 H 0.04 1.82 8.05 -2.39 -0.02 1.80 14 19 H 0.04 1.53 8.14 -2.38 -0.02 1.51 14 20 H 0.12 3.40 8.14 -2.39 -0.02 3.38 14 21 H 0.13 5.22 8.06 -2.91 -0.02 5.19 14 22 H 0.15 5.25 8.06 -2.91 -0.02 5.22 14 23 H 0.28 12.79 8.29 -92.71 -0.77 12.02 14 Total: -1.00 -58.27 227.68 3.78 -54.49 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.23 Total: 8.12 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 3.35 Total: -12.62 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -1.81 Total: -68.80 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.94 Total: -15.79 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.55 kcal Atomic # 17 Polarization: -3.86 SS G_CDS: -0.07 Total: -3.94 kcal Total: -58.27 3.78 -54.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238335605.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.597 kcal (2) G-P(sol) polarization free energy of solvation -58.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds