Wall clock time and date at job start Mon Mar 30 2020 02:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35524 * 116.99553 * 2 1 4 4 C 1.38786 * 120.96673 * 0.02562 * 3 2 1 5 5 C 1.38357 * 119.34500 * 180.22642 * 4 3 2 6 6 Cl 1.73592 * 119.31039 * 179.74591 * 5 4 3 7 7 N 1.32350 * 121.38046 * 359.49139 * 5 4 3 8 8 C 1.31470 * 122.13767 * 0.49913 * 7 5 4 9 9 C 1.40659 * 120.46156 * 359.77145 * 8 7 5 10 10 C 1.41185 * 120.70214 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00267 * 204.21301 * 10 9 8 12 12 C 1.39928 * 119.99597 * 24.20759 * 10 9 8 13 13 N 1.30873 * 120.00037 * 17.58245 * 12 10 9 14 14 Si 1.86804 * 119.99589 * 197.58370 * 12 10 9 15 15 H 1.48498 * 109.46986 * 60.00313 * 14 12 10 16 16 H 1.48498 * 109.46629 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47000 * 299.99948 * 14 12 10 18 18 H 1.08999 * 109.47291 * 59.99794 * 1 2 3 19 19 H 1.09006 * 109.47142 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47282 * 299.99792 * 1 2 3 21 21 H 1.07997 * 120.32810 * 359.94804 * 4 3 2 22 22 H 1.07993 * 119.77334 * 179.74961 * 8 7 5 23 23 H 0.97000 * 119.99942 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.3079 2.3841 0.0005 5 6 1.9706 3.5986 -0.0043 6 17 1.0488 5.0696 -0.0103 7 7 3.2926 3.6625 0.0007 8 6 4.0448 2.5842 0.0007 9 6 3.4585 1.3057 0.0001 10 6 4.2614 0.1444 -0.0005 11 1 3.8670 -0.7847 -0.3844 12 6 5.5685 0.1974 0.4964 13 7 5.9373 1.1919 1.2630 14 14 6.7868 -1.1515 0.0654 15 1 6.9650 -1.2053 -1.4078 16 1 8.0923 -0.8643 0.7123 17 1 6.2715 -2.4572 0.5499 18 1 -0.3634 0.5139 -0.8899 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 0.2285 2.3518 0.0001 22 1 5.1204 2.6808 0.0007 23 1 6.8434 1.2289 1.6071 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238341783.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:20 Heat of formation + Delta-G solvation = -43.761386 kcal Electronic energy + Delta-G solvation = -11840.168136 eV Core-core repulsion = 9485.448793 eV Total energy + Delta-G solvation = -2354.719343 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.89900 -38.68833 -37.19753 -35.85126 -32.29868 -31.54073 -28.25742 -27.36415 -23.58947 -23.22800 -19.58719 -18.82728 -17.83561 -16.76660 -16.43535 -15.79176 -15.75921 -14.93841 -14.65989 -14.60269 -13.58154 -13.10983 -12.89057 -12.83225 -12.45694 -12.24116 -11.95822 -11.94193 -11.74555 -11.15848 -10.17239 -9.69638 -9.50111 -8.80219 -6.40916 0.52949 0.82680 1.32187 1.42015 1.52263 1.56166 2.19180 2.60262 2.66284 3.48718 4.05541 4.28877 4.45025 4.47209 4.65874 4.72770 4.97561 5.07502 5.20316 5.32153 5.86700 6.19653 6.38887 6.64516 6.86731 7.50193 8.18311 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.035772 B = 0.010577 C = 0.008355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.536475 B = 2646.585821 C = 3350.640142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.323 6.323 3 C 0.044 3.956 4 C -0.200 4.200 5 C 0.054 3.946 6 Cl -0.067 7.067 7 N -0.497 5.497 8 C 0.042 3.958 9 C 0.022 3.978 10 C -0.450 4.450 11 H 0.087 0.913 12 C 0.034 3.966 13 N -0.811 5.811 14 Si 0.993 3.007 15 H -0.257 1.257 16 H -0.264 1.264 17 H -0.258 1.258 18 H 0.057 0.943 19 H 0.121 0.879 20 H 0.054 0.946 21 H 0.147 0.853 22 H 0.153 0.847 23 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 -2.940 -1.650 5.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.237 6.237 3 C -0.007 4.007 4 C -0.222 4.222 5 C -0.109 4.109 6 Cl -0.040 7.040 7 N -0.210 5.210 8 C -0.119 4.119 9 C 0.017 3.983 10 C -0.479 4.479 11 H 0.105 0.895 12 C -0.183 4.183 13 N -0.435 5.435 14 Si 0.812 3.188 15 H -0.181 1.181 16 H -0.188 1.188 17 H -0.182 1.182 18 H 0.076 0.924 19 H 0.139 0.861 20 H 0.073 0.927 21 H 0.164 0.836 22 H 0.170 0.830 23 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.252 -2.108 -1.490 4.974 hybrid contribution -0.231 -0.697 0.059 0.737 sum -4.483 -2.805 -1.431 5.478 Atomic orbital electron populations 1.23243 0.77646 1.05059 1.01486 1.85929 1.22282 1.26071 1.89374 1.19389 0.92060 0.84155 1.05105 1.21365 1.00565 0.90500 1.09791 1.20645 0.89164 0.85879 1.15220 1.98243 1.71073 1.37014 1.97637 1.66395 1.05835 1.35176 1.13551 1.22541 0.98620 0.85492 1.05259 1.18470 0.89460 0.95966 0.94395 1.19660 0.97263 0.96410 1.34543 0.89474 1.26927 1.00260 0.99610 0.91512 1.69798 1.21095 1.31209 1.21423 0.85076 0.76216 0.77581 0.79906 1.18129 1.18811 1.18230 0.92402 0.86092 0.92738 0.83561 0.82976 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.84 113.37 1.12 1.70 14 2 O -0.32 -13.83 9.90 -88.27 -0.87 -14.71 14 3 C 0.04 2.15 6.76 23.27 0.16 2.30 14 4 C -0.20 -8.84 8.85 22.43 0.20 -8.64 14 5 C 0.05 2.55 7.27 84.64 0.62 3.17 14 6 Cl -0.07 -2.63 29.09 -2.72 -0.08 -2.71 14 7 N -0.50 -26.06 10.31 -184.76 -1.90 -27.96 14 8 C 0.04 2.28 9.90 85.34 0.84 3.13 14 9 C 0.02 1.19 5.60 -21.09 -0.12 1.07 14 10 C -0.45 -23.23 8.78 23.40 0.21 -23.02 14 11 H 0.09 4.38 7.71 -2.91 -0.02 4.36 14 12 C 0.03 1.62 5.16 85.24 0.44 2.06 14 13 N -0.81 -40.09 10.95 21.83 0.24 -39.85 14 14 Si 0.99 35.62 29.59 68.60 2.03 37.65 14 15 H -0.26 -9.03 7.11 99.48 0.71 -8.32 14 16 H -0.26 -8.89 7.11 99.48 0.71 -8.18 14 17 H -0.26 -9.01 7.11 99.48 0.71 -8.31 14 18 H 0.06 1.54 7.71 -2.39 -0.02 1.52 14 19 H 0.12 2.69 8.14 -2.38 -0.02 2.67 14 20 H 0.05 1.49 7.71 -2.39 -0.02 1.47 14 21 H 0.15 5.36 6.45 -2.91 -0.02 5.34 14 22 H 0.15 8.35 6.14 -2.91 -0.02 8.34 14 23 H 0.30 13.19 8.30 -92.71 -0.77 12.42 14 Total: -1.00 -58.63 225.46 4.11 -54.53 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.24 Total: 11.30 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 3.46 Total: -18.24 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -1.66 Total: -67.81 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.87 Total: -14.71 kcal Atomic # 14 Polarization: 35.62 SS G_CDS: 2.03 Total: 37.65 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -0.08 Total: -2.71 kcal Total: -58.63 4.11 -54.53 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238341783.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.765 kcal (2) G-P(sol) polarization free energy of solvation -58.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds