Wall clock time and date at job start Mon Mar 30 2020 02:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35657 * 116.99625 * 2 1 4 4 C 1.38527 * 120.64646 * 0.02562 * 3 2 1 5 5 N 1.31849 * 120.93038 * 180.02562 * 4 3 2 6 6 C 1.32092 * 122.42901 * 0.02562 * 5 4 3 7 7 C 1.37704 * 121.17786 * 359.97312 * 6 5 4 8 8 Cl 1.73590 * 120.54972 * 180.02562 * 7 6 5 9 9 C 1.41229 * 118.90082 * 0.02562 * 7 6 5 10 10 C 1.41165 * 121.07126 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00123 * 323.03224 * 10 9 7 12 12 C 1.40063 * 119.99810 * 143.03173 * 10 9 7 13 13 N 1.30771 * 120.00014 * 338.65488 * 12 10 9 14 14 Si 1.86799 * 119.99880 * 158.65212 * 12 10 9 15 15 H 1.48492 * 109.47271 * 90.00067 * 14 12 10 16 16 H 1.48505 * 109.46858 * 209.99968 * 14 12 10 17 17 H 1.48499 * 109.46990 * 329.99685 * 14 12 10 18 18 H 1.08997 * 109.47260 * 60.00785 * 1 2 3 19 19 H 1.09003 * 109.47017 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47572 * 300.00464 * 1 2 3 21 21 H 1.08005 * 119.53801 * 0.03363 * 4 3 2 22 22 H 1.08003 * 119.41141 * 180.02562 * 6 5 4 23 23 H 0.96993 * 120.00063 * 178.27752 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.3034 2.3789 0.0005 5 7 1.8960 3.5567 0.0000 6 6 3.2104 3.6883 -0.0015 7 6 4.0371 2.5870 -0.0021 8 17 5.7624 2.7788 -0.0034 9 6 3.4581 1.2989 -0.0016 10 6 4.2622 0.1386 -0.0027 11 1 5.1833 0.1205 -0.5663 12 6 3.8654 -0.9891 0.7270 13 7 3.0180 -0.8636 1.7151 14 14 4.5466 -2.6723 0.2889 15 1 5.7914 -2.9186 1.0601 16 1 3.5430 -3.7147 0.6228 17 1 4.8468 -2.7217 -1.1646 18 1 -0.3633 0.5137 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 0.2246 2.3258 0.0015 22 1 3.6444 4.6773 -0.0014 23 1 2.7240 -1.6478 2.2044 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238346226.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:27 Heat of formation + Delta-G solvation = -36.318674 kcal Electronic energy + Delta-G solvation = -12163.963101 eV Core-core repulsion = 9809.566498 eV Total energy + Delta-G solvation = -2354.396603 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80771 -38.39550 -36.92147 -35.78155 -32.57987 -30.70127 -28.12576 -27.63563 -23.54875 -23.10077 -19.66625 -18.37498 -17.56009 -16.97161 -16.36162 -16.15275 -15.47634 -14.71366 -14.40278 -14.34012 -13.58579 -13.21616 -12.72672 -12.59995 -12.51154 -12.32591 -12.01972 -11.87465 -11.58450 -11.01035 -10.01149 -9.63981 -8.93504 -8.69699 -6.45094 0.59087 0.90458 1.41808 1.48881 1.55742 1.70057 2.24112 2.77048 2.96077 3.46079 3.92799 4.29538 4.42848 4.50774 4.62418 4.73929 4.80152 5.10144 5.26387 5.49599 5.92262 6.27233 6.43916 6.80715 7.06042 7.48837 8.30943 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.025423 B = 0.017212 C = 0.010804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.079934 B = 1626.355249 C = 2591.004052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.298 6.298 3 C 0.023 3.977 4 C -0.004 4.004 5 N -0.541 5.541 6 C 0.088 3.912 7 C -0.177 4.177 8 Cl -0.083 7.083 9 C 0.089 3.911 10 C -0.470 4.470 11 H 0.084 0.916 12 C 0.056 3.944 13 N -0.781 5.781 14 Si 0.972 3.028 15 H -0.264 1.264 16 H -0.265 1.265 17 H -0.262 1.262 18 H 0.055 0.945 19 H 0.106 0.894 20 H 0.046 0.954 21 H 0.156 0.844 22 H 0.157 0.843 23 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.814 -1.527 -1.776 2.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.210 6.210 3 C -0.026 4.026 4 C -0.155 4.155 5 N -0.257 5.257 6 C -0.070 4.070 7 C -0.209 4.209 8 Cl -0.055 7.055 9 C 0.080 3.920 10 C -0.499 4.499 11 H 0.102 0.898 12 C -0.165 4.165 13 N -0.404 5.404 14 Si 0.793 3.207 15 H -0.189 1.189 16 H -0.189 1.189 17 H -0.186 1.186 18 H 0.074 0.926 19 H 0.124 0.876 20 H 0.065 0.935 21 H 0.173 0.827 22 H 0.174 0.826 23 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.274 -1.090 -1.563 2.967 hybrid contribution 0.633 -1.183 0.032 1.342 sum -1.641 -2.273 -1.531 3.195 Atomic orbital electron populations 1.23081 0.79454 1.03993 1.00769 1.86114 1.20397 1.26084 1.88385 1.20273 0.92266 0.85250 1.04808 1.22576 0.99848 0.87524 1.05508 1.67419 1.10815 1.26205 1.21221 1.22180 0.88642 0.97316 0.98882 1.21794 0.84151 0.94691 1.20270 1.98199 1.12325 1.97419 1.97577 1.17439 0.90033 0.92711 0.91768 1.19464 1.07286 0.96702 1.26490 0.89803 1.26455 0.93887 1.03855 0.92316 1.69717 1.23966 1.33987 1.12754 0.85348 0.78814 0.76617 0.79883 1.18918 1.18940 1.18569 0.92614 0.87566 0.93497 0.82722 0.82594 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.82 113.37 1.11 1.87 14 2 O -0.30 -13.78 7.44 -89.73 -0.67 -14.45 14 3 C 0.02 1.16 6.22 23.17 0.14 1.31 14 4 C 0.00 -0.19 10.22 84.76 0.87 0.67 14 5 N -0.54 -25.23 10.32 -195.84 -2.02 -27.25 14 6 C 0.09 3.99 10.95 84.53 0.93 4.92 14 7 C -0.18 -8.61 6.40 22.88 0.15 -8.46 14 8 Cl -0.08 -3.56 27.97 -2.72 -0.08 -3.64 14 9 C 0.09 4.70 5.41 -20.99 -0.11 4.58 14 10 C -0.47 -24.53 8.27 23.43 0.19 -24.34 14 11 H 0.08 4.32 7.61 -2.91 -0.02 4.29 14 12 C 0.06 2.71 4.45 85.29 0.38 3.09 14 13 N -0.78 -39.17 11.21 21.85 0.24 -38.92 14 14 Si 0.97 37.56 29.61 68.60 2.03 39.59 14 15 H -0.26 -9.88 7.11 99.48 0.71 -9.17 14 16 H -0.27 -9.68 7.11 99.48 0.71 -8.98 14 17 H -0.26 -10.10 7.11 99.48 0.71 -9.39 14 18 H 0.06 1.66 7.68 -2.39 -0.02 1.64 14 19 H 0.11 2.97 8.14 -2.39 -0.02 2.95 14 20 H 0.05 1.51 7.68 -2.39 -0.02 1.49 14 21 H 0.16 6.02 6.32 -2.91 -0.02 6.00 14 22 H 0.16 6.09 8.06 -2.91 -0.02 6.06 14 23 H 0.29 13.21 8.30 -92.71 -0.77 12.44 14 Total: -1.00 -58.07 223.40 4.40 -53.67 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.23 Total: 7.35 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 3.66 Total: -16.35 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -1.78 Total: -66.17 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.67 Total: -14.45 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Atomic # 17 Polarization: -3.56 SS G_CDS: -0.08 Total: -3.64 kcal Total: -58.07 4.40 -53.67 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238346226.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.351 kcal (2) G-P(sol) polarization free energy of solvation -58.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds