Wall clock time and date at job start Mon Mar 30 2020 02:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35631 * 116.99949 * 2 1 4 4 N 1.31782 * 119.57818 * 5.33276 * 3 2 1 5 5 C 1.33710 * 121.45704 * 179.97438 * 4 3 2 6 6 C 1.41276 * 119.78095 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00222 * 171.34479 * 6 5 4 8 8 C 1.40025 * 119.99504 * 351.34242 * 6 5 4 9 9 N 1.30752 * 119.99720 * 187.13383 * 8 6 5 10 10 Si 1.86796 * 120.00277 * 7.13111 * 8 6 5 11 11 H 1.48507 * 109.47020 * 182.15770 * 10 8 6 12 12 H 1.48504 * 109.47328 * 302.15864 * 10 8 6 13 13 H 1.48501 * 109.46883 * 62.15854 * 10 8 6 14 14 C 1.40626 * 120.44347 * 0.25060 * 5 4 3 15 15 C 1.38240 * 119.12478 * 359.47191 * 14 5 4 16 16 C 1.38859 * 118.64252 * 0.51954 * 15 14 5 17 17 Cl 1.73601 * 120.25510 * 179.72538 * 16 15 14 18 18 H 1.08994 * 109.47007 * 185.65367 * 1 2 3 19 19 H 1.09004 * 109.46453 * 305.65058 * 1 2 3 20 20 H 1.08998 * 109.47569 * 65.64599 * 1 2 3 21 21 H 0.97004 * 119.99937 * 354.88934 * 9 8 6 22 22 H 1.08002 * 120.43902 * 179.72177 * 14 5 4 23 23 H 1.07993 * 120.67738 * 180.26749 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 7 1.3233 2.3061 0.1065 5 6 1.8912 3.5167 0.1111 6 6 1.0836 4.6701 0.2266 7 1 1.5414 5.6375 0.3713 8 6 -0.3103 4.5589 0.1534 9 7 -1.0511 5.6358 0.1198 10 14 -1.1115 2.8722 0.1036 11 1 -2.5828 3.0267 -0.0252 12 1 -0.5900 2.1106 -1.0598 13 1 -0.7985 2.1385 1.3561 14 6 3.2864 3.6497 -0.0041 15 6 4.0642 2.5118 -0.1110 16 6 3.4357 1.2736 -0.1118 17 17 4.3713 -0.1821 -0.2512 18 1 -0.3633 -1.0226 0.1012 19 1 -0.3632 0.5990 0.8351 20 1 -0.3634 0.4238 -0.9362 21 1 -0.6417 6.5095 0.2202 22 1 3.7446 4.6277 -0.0049 23 1 5.1383 2.5847 -0.1964 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238378946.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:49 Heat of formation + Delta-G solvation = -41.725663 kcal Electronic energy + Delta-G solvation = -12121.668150 eV Core-core repulsion = 9767.037083 eV Total energy + Delta-G solvation = -2354.631067 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.22256 -38.76193 -37.19016 -35.71466 -33.00240 -31.81986 -28.83081 -26.98919 -23.87254 -23.14554 -20.58370 -19.29117 -17.68382 -17.06627 -17.00533 -15.93852 -15.49331 -15.21047 -14.51046 -14.41197 -13.95057 -13.47462 -13.31129 -12.83357 -12.65606 -11.94525 -11.77548 -11.63243 -11.59579 -11.19588 -10.37865 -9.83879 -9.42767 -9.29606 -6.94317 0.43597 0.65384 1.45857 1.55682 1.58464 1.98472 2.23441 2.36045 2.50140 3.35405 3.80234 4.22248 4.38812 4.42840 4.45423 4.59691 4.73049 5.15248 5.23586 5.30516 5.53658 5.76160 6.03407 6.30914 6.55730 7.25311 7.84006 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.040523 B = 0.013614 C = 0.010257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.805836 B = 2056.260622 C = 2729.146635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.311 6.311 3 C 0.360 3.640 4 N -0.627 5.627 5 C 0.260 3.740 6 C -0.485 4.485 7 H 0.080 0.920 8 C 0.012 3.988 9 N -0.815 5.815 10 Si 1.177 2.823 11 H -0.328 1.328 12 H -0.274 1.274 13 H -0.283 1.283 14 C -0.284 4.284 15 C 0.000 4.000 16 C -0.236 4.236 17 Cl -0.075 7.075 18 H 0.134 0.866 19 H 0.057 0.943 20 H 0.060 0.940 21 H 0.286 0.714 22 H 0.132 0.868 23 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.241 -7.491 -0.426 8.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.218 6.218 3 C 0.178 3.822 4 N -0.363 5.363 5 C 0.138 3.862 6 C -0.517 4.517 7 H 0.098 0.902 8 C -0.206 4.206 9 N -0.437 5.437 10 Si 1.011 2.989 11 H -0.262 1.262 12 H -0.202 1.202 13 H -0.212 1.212 14 C -0.305 4.305 15 C -0.023 4.023 16 C -0.268 4.268 17 Cl -0.047 7.047 18 H 0.152 0.848 19 H 0.075 0.925 20 H 0.079 0.921 21 H 0.097 0.903 22 H 0.150 0.850 23 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.142 -8.504 -0.517 8.785 hybrid contribution 2.168 1.474 0.172 2.627 sum 4.310 -7.030 -0.345 8.253 Atomic orbital electron populations 1.23929 0.77371 1.05465 1.02542 1.86189 1.23190 1.24483 1.87914 1.19691 0.88449 0.84601 0.89475 1.66260 1.37785 0.99032 1.33201 1.18502 0.91870 0.88777 0.87076 1.20875 0.93827 0.94158 1.42860 0.90188 1.28632 0.95342 1.08331 0.88326 1.70678 1.41055 1.00699 1.31232 0.82088 0.69457 0.67883 0.79438 1.26183 1.20247 1.21166 1.21709 0.93167 0.98879 1.16778 1.21089 1.00454 0.88892 0.91904 1.20209 0.88178 0.88897 1.29489 1.98236 1.72267 1.36690 1.97549 0.84814 0.92481 0.92141 0.90302 0.85003 0.82408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.16 113.37 1.04 1.08 14 2 O -0.31 -12.60 9.94 -89.44 -0.89 -13.49 14 3 C 0.36 16.15 7.49 85.05 0.64 16.79 14 4 N -0.63 -30.48 3.99 -302.33 -1.21 -31.69 14 5 C 0.26 12.89 6.42 40.19 0.26 13.15 14 6 C -0.49 -25.36 9.56 23.45 0.22 -25.14 14 7 H 0.08 4.17 8.06 -2.91 -0.02 4.14 14 8 C 0.01 0.64 5.52 85.29 0.47 1.11 14 9 N -0.81 -43.05 13.65 21.84 0.30 -42.76 14 10 Si 1.18 54.19 22.31 68.60 1.53 55.72 14 11 H -0.33 -14.85 7.11 99.48 0.71 -14.14 14 12 H -0.27 -12.29 4.82 99.48 0.48 -11.82 14 13 H -0.28 -12.71 5.73 99.48 0.57 -12.14 14 14 C -0.28 -12.15 9.83 22.85 0.22 -11.93 14 15 C 0.00 0.00 9.95 22.42 0.22 0.22 14 16 C -0.24 -9.64 6.39 22.77 0.15 -9.49 14 17 Cl -0.08 -2.62 28.53 -2.72 -0.08 -2.69 14 18 H 0.13 3.29 8.14 -2.39 -0.02 3.27 14 19 H 0.06 2.12 4.61 -2.38 -0.01 2.11 14 20 H 0.06 2.13 5.89 -2.39 -0.01 2.12 14 21 H 0.29 14.48 8.72 -92.70 -0.81 13.67 14 22 H 0.13 5.13 8.06 -2.91 -0.02 5.10 14 23 H 0.16 4.78 8.06 -2.91 -0.02 4.76 14 Total: -1.00 -55.76 211.94 3.71 -52.05 By element: Atomic # 1 Polarization: -3.76 SS G_CDS: 0.83 Total: -2.93 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 3.22 Total: -14.21 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -0.91 Total: -74.45 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.89 Total: -13.49 kcal Atomic # 14 Polarization: 54.19 SS G_CDS: 1.53 Total: 55.72 kcal Atomic # 17 Polarization: -2.62 SS G_CDS: -0.08 Total: -2.69 kcal Total: -55.76 3.71 -52.05 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238378946.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.326 kcal (2) G-P(sol) polarization free energy of solvation -55.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds