Wall clock time and date at job start Mon Mar 30 2020 02:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35389 * 117.00118 * 2 1 4 4 N 1.32046 * 119.87088 * 0.27209 * 3 2 1 5 5 C 1.32128 * 121.87446 * 180.30895 * 4 3 2 6 6 Cl 1.73601 * 119.30989 * 179.69862 * 5 4 3 7 7 C 1.38845 * 121.37804 * 359.67755 * 5 4 3 8 8 C 1.37925 * 119.56731 * 0.02593 * 7 5 4 9 9 C 1.41059 * 118.27987 * 359.97438 * 8 7 5 10 10 C 1.41100 * 120.68253 * 179.97438 * 9 8 7 11 11 H 1.07993 * 120.00270 * 150.53820 * 10 9 8 12 12 C 1.39940 * 119.99613 * 330.26065 * 10 9 8 13 13 N 1.30870 * 119.99686 * 161.80960 * 12 10 9 14 14 Si 1.86801 * 119.99939 * 341.81230 * 12 10 9 15 15 H 1.48504 * 109.47000 * 95.39260 * 14 12 10 16 16 H 1.48500 * 109.46948 * 215.38480 * 14 12 10 17 17 H 1.48495 * 109.47254 * 335.39127 * 14 12 10 18 18 H 1.08999 * 109.47416 * 299.99789 * 1 2 3 19 19 H 1.09004 * 109.47460 * 59.99735 * 1 2 3 20 20 H 1.09006 * 109.47549 * 179.97438 * 1 2 3 21 21 H 1.08008 * 120.21803 * 180.02562 * 7 5 4 22 22 H 1.07997 * 120.86494 * 179.97438 * 8 7 5 23 23 H 0.96998 * 119.99911 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2063 0.0000 4 7 1.3220 2.3121 0.0054 5 6 1.8803 3.5096 -0.0004 6 17 0.8674 4.9195 -0.0006 7 6 3.2602 3.6640 -0.0059 8 6 4.0699 2.5474 -0.0059 9 6 3.4566 1.2771 0.0004 10 6 4.2363 0.1011 0.0002 11 1 3.8581 -0.7976 0.4644 12 6 5.4973 0.0979 -0.6066 13 7 6.3615 -0.8405 -0.3147 14 14 5.9470 1.4331 -1.8332 15 1 6.6861 2.5166 -1.1367 16 1 6.8036 0.8566 -2.9005 17 1 4.7090 1.9875 -2.4374 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 3.6966 4.6519 -0.0102 22 1 5.1456 2.6431 -0.0105 23 1 7.2354 -0.8430 -0.7356 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238385247.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:02 Heat of formation + Delta-G solvation = -22.458972 kcal Electronic energy + Delta-G solvation = -11925.895518 eV Core-core repulsion = 9572.099917 eV Total energy + Delta-G solvation = -2353.795601 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.29375 -36.82732 -35.55191 -34.07869 -31.52479 -29.95544 -26.69134 -25.31935 -22.21782 -21.44922 -17.69220 -17.50259 -16.27956 -15.26593 -15.00208 -14.43841 -13.56080 -13.38201 -12.99451 -12.78359 -12.36600 -11.74787 -11.24623 -11.15484 -10.95471 -10.58761 -10.38908 -10.11751 -9.89321 -9.58415 -8.65867 -8.58928 -7.52249 -7.20592 -4.63901 2.14157 2.39113 2.90940 2.94534 3.06348 3.16581 3.78587 4.15449 4.27073 5.11308 5.63785 5.85146 5.92638 6.01127 6.11927 6.28419 6.30681 6.72932 6.92281 7.24856 7.37149 7.92759 8.09663 8.42894 8.46920 8.94910 9.79234 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.031567 B = 0.012835 C = 0.009643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.800197 B = 2180.982614 C = 2902.871364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.298 6.298 3 C 0.245 3.755 4 N -0.511 5.511 5 C 0.061 3.939 6 Cl -0.090 7.090 7 C -0.116 4.116 8 C -0.205 4.205 9 C 0.046 3.954 10 C -0.401 4.401 11 H 0.104 0.896 12 C 0.081 3.919 13 N -0.785 5.785 14 Si 0.910 3.090 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.243 1.243 18 H 0.046 0.954 19 H 0.047 0.953 20 H 0.082 0.918 21 H 0.116 0.884 22 H 0.124 0.876 23 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.387 4.241 -1.200 5.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.205 6.205 3 C 0.058 3.942 4 N -0.236 5.236 5 C -0.096 4.096 6 Cl -0.063 7.063 7 C -0.138 4.138 8 C -0.230 4.230 9 C 0.040 3.960 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.141 4.141 13 N -0.408 5.408 14 Si 0.735 3.265 15 H -0.191 1.191 16 H -0.211 1.211 17 H -0.166 1.166 18 H 0.065 0.935 19 H 0.066 0.934 20 H 0.100 0.900 21 H 0.134 0.866 22 H 0.142 0.858 23 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.021 3.906 -1.195 5.732 hybrid contribution 0.789 0.810 -0.467 1.223 sum -3.232 4.715 -1.662 5.953 Atomic orbital electron populations 1.22598 0.79886 1.01299 1.01332 1.86176 1.20305 1.24836 1.89216 1.19679 0.88654 0.82484 1.03357 1.65750 1.42037 0.97934 1.17871 1.20030 0.86896 0.85560 1.17107 1.98262 1.71666 1.38584 1.97774 1.21041 0.91551 0.98949 1.02223 1.21002 0.98654 0.91067 1.12228 1.17742 0.88968 0.94246 0.95049 1.19431 0.97635 0.97694 1.28129 0.87852 1.26273 0.94714 0.96538 0.96589 1.69685 1.05806 1.30982 1.34300 0.86295 0.80175 0.80033 0.79961 1.19054 1.21102 1.16642 0.93491 0.93444 0.89953 0.86556 0.85842 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.80 10.38 101.05 1.05 1.85 14 2 O -0.30 -6.82 9.84 -17.86 -0.18 -7.00 14 3 C 0.25 6.00 7.54 -16.23 -0.12 5.88 14 4 N -0.51 -12.05 9.18 -9.72 -0.09 -12.13 14 5 C 0.06 1.36 7.28 -17.20 -0.13 1.24 14 6 Cl -0.09 -1.71 29.09 -51.86 -1.51 -3.22 14 7 C -0.12 -2.50 9.84 -39.47 -0.39 -2.89 14 8 C -0.20 -4.74 7.28 -38.63 -0.28 -5.02 14 9 C 0.05 1.15 5.12 -106.51 -0.55 0.60 14 10 C -0.40 -10.40 9.21 -37.86 -0.35 -10.75 14 11 H 0.10 2.84 7.91 -52.49 -0.42 2.43 14 12 C 0.08 1.99 5.42 -17.32 -0.09 1.89 14 13 N -0.79 -19.53 13.93 55.55 0.77 -18.76 14 14 Si 0.91 19.38 24.53 -169.99 -4.17 15.21 14 15 H -0.26 -5.35 6.70 56.52 0.38 -4.97 14 16 H -0.28 -5.81 7.11 56.52 0.40 -5.41 14 17 H -0.24 -5.42 6.86 56.52 0.39 -5.03 14 18 H 0.05 0.82 8.10 -51.93 -0.42 0.40 14 19 H 0.05 0.83 8.11 -51.93 -0.42 0.41 14 20 H 0.08 1.18 8.14 -51.93 -0.42 0.75 14 21 H 0.12 2.14 8.06 -52.48 -0.42 1.72 14 22 H 0.12 2.72 4.81 -52.49 -0.25 2.47 14 23 H 0.29 6.48 8.30 -40.82 -0.34 6.14 14 LS Contribution 222.73 15.07 3.36 3.36 Total: -1.00 -26.64 222.73 -4.20 -30.83 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -1.53 Total: -1.10 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -0.86 Total: -7.19 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.68 Total: -30.89 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.18 Total: -7.00 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.17 Total: 15.21 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -1.51 Total: -3.22 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -26.64 -4.20 -30.83 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238385247.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.375 kcal (2) G-P(sol) polarization free energy of solvation -26.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds