Wall clock time and date at job start Mon Mar 30 2020 02:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35651 * 117.00159 * 2 1 4 4 C 1.38813 * 120.72181 * 270.02469 * 3 2 1 5 5 Cl 1.73594 * 119.64100 * 359.97438 * 4 3 2 6 6 N 1.31910 * 120.71583 * 179.97438 * 4 3 2 7 7 C 1.32150 * 122.39656 * 0.02562 * 6 4 3 8 8 C 1.36482 * 121.37494 * 359.71781 * 7 6 4 9 9 C 1.41134 * 119.07990 * 0.53462 * 8 7 6 10 10 C 1.41213 * 121.06289 * 179.74746 * 9 8 7 11 11 H 1.07996 * 119.99777 * 155.87917 * 10 9 8 12 12 C 1.40047 * 119.99985 * 335.60171 * 10 9 8 13 13 N 1.30767 * 120.00216 * 343.53154 * 12 10 9 14 14 Si 1.86807 * 119.99920 * 163.52723 * 12 10 9 15 15 H 1.48492 * 109.47171 * 89.99973 * 14 12 10 16 16 H 1.48505 * 109.47041 * 210.00469 * 14 12 10 17 17 H 1.48497 * 109.47010 * 330.00076 * 14 12 10 18 18 H 1.09003 * 109.46966 * 299.99803 * 1 2 3 19 19 H 1.09002 * 109.47052 * 59.99992 * 1 2 3 20 20 H 1.08999 * 109.47034 * 180.02562 * 1 2 3 21 21 H 1.08006 * 119.31579 * 180.02562 * 7 6 4 22 22 H 1.07996 * 120.46251 * 180.29340 * 8 7 6 23 23 H 0.96999 * 119.99616 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 2.3664 1.8407 -1.1933 5 17 1.9767 1.0759 -2.7022 6 7 2.9649 3.0163 -1.1932 7 6 3.2867 3.6468 -0.0773 8 6 3.0086 3.1114 1.1469 9 6 2.3740 1.8527 1.2170 10 6 2.0716 1.2575 2.4614 11 1 1.2767 0.5299 2.5329 12 6 2.8063 1.6064 3.6015 13 7 3.9553 2.2180 3.4770 14 14 2.1447 1.1980 5.3001 15 1 2.6232 -0.1474 5.7074 16 1 2.6248 2.2103 6.2748 17 1 0.6601 1.2067 5.2683 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 3.7755 4.6081 -0.1352 22 1 3.2739 3.6417 2.0495 23 1 4.4643 2.4592 4.2667 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238400887.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:15 Heat of formation + Delta-G solvation = -42.558687 kcal Electronic energy + Delta-G solvation = -12000.724972 eV Core-core repulsion = 9646.057782 eV Total energy + Delta-G solvation = -2354.667190 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.74544 -38.32260 -37.36020 -36.05996 -32.46785 -30.91322 -28.42579 -27.22139 -23.74206 -23.22746 -19.69631 -18.23543 -17.88984 -17.06239 -16.43240 -16.29559 -15.11761 -14.87005 -14.47434 -14.39790 -13.50454 -13.37142 -12.93901 -12.65088 -12.50024 -12.16933 -12.06923 -11.91991 -11.33974 -10.99879 -10.05028 -9.95845 -9.39831 -8.82468 -6.66970 0.47545 0.73936 1.13494 1.39294 1.49449 1.55603 2.15001 2.58843 3.05985 3.51602 4.11763 4.48420 4.58720 4.68766 4.73215 4.80784 4.92655 5.11237 5.27807 5.61187 5.89866 6.20653 6.48485 6.62120 6.94274 7.36310 8.11006 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.042235 B = 0.011225 C = 0.009204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.801222 B = 2493.909846 C = 3041.511623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.328 6.328 3 C -0.074 4.074 4 C 0.171 3.829 5 Cl -0.059 7.059 6 N -0.579 5.579 7 C 0.097 3.903 8 C -0.219 4.219 9 C 0.090 3.910 10 C -0.449 4.449 11 H 0.087 0.913 12 C 0.039 3.961 13 N -0.797 5.797 14 Si 0.991 3.009 15 H -0.262 1.262 16 H -0.259 1.259 17 H -0.255 1.255 18 H 0.035 0.965 19 H 0.037 0.963 20 H 0.111 0.889 21 H 0.163 0.837 22 H 0.131 0.869 23 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.163 -0.821 1.061 4.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.243 6.243 3 C -0.125 4.125 4 C 0.008 3.992 5 Cl -0.030 7.030 6 N -0.299 5.299 7 C -0.051 4.051 8 C -0.242 4.242 9 C 0.081 3.919 10 C -0.478 4.478 11 H 0.105 0.895 12 C -0.181 4.181 13 N -0.421 5.421 14 Si 0.810 3.190 15 H -0.186 1.186 16 H -0.183 1.183 17 H -0.179 1.179 18 H 0.054 0.946 19 H 0.056 0.944 20 H 0.129 0.871 21 H 0.180 0.820 22 H 0.149 0.851 23 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.693 -0.553 0.251 3.742 hybrid contribution -0.383 -0.332 1.087 1.199 sum -4.076 -0.885 1.338 4.380 Atomic orbital electron populations 1.23071 0.80296 1.03517 0.99676 1.85930 1.19814 1.24609 1.93945 1.19446 1.11418 0.90761 0.90860 1.21957 0.99868 0.92057 0.85365 1.98276 1.92218 1.79543 1.33012 1.66698 1.21222 1.09334 1.32599 1.22035 0.97077 0.99083 0.86950 1.21995 1.06926 0.96685 0.98555 1.18459 0.89827 0.91137 0.92460 1.19785 1.15460 1.20609 0.91939 0.89481 1.26940 0.93327 0.92182 1.05613 1.69778 1.09803 1.27555 1.34944 0.85056 0.79948 0.79354 0.74625 1.18614 1.18337 1.17882 0.94639 0.94404 0.87100 0.81963 0.85086 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 11.07 113.37 1.25 2.31 14 2 O -0.33 -15.23 9.31 -89.66 -0.83 -16.07 14 3 C -0.07 -3.75 5.79 23.23 0.13 -3.61 14 4 C 0.17 8.32 7.29 84.82 0.62 8.94 14 5 Cl -0.06 -2.41 28.67 -2.72 -0.08 -2.49 14 6 N -0.58 -28.17 10.31 -187.51 -1.93 -30.10 14 7 C 0.10 4.45 11.09 84.23 0.93 5.39 14 8 C -0.22 -10.86 8.73 22.57 0.20 -10.66 14 9 C 0.09 4.68 5.61 -21.01 -0.12 4.56 14 10 C -0.45 -22.52 8.80 23.44 0.21 -22.31 14 11 H 0.09 4.25 7.35 -2.91 -0.02 4.23 14 12 C 0.04 1.78 5.20 85.29 0.44 2.23 14 13 N -0.80 -37.56 10.94 21.84 0.24 -37.32 14 14 Si 0.99 34.20 29.59 68.60 2.03 36.23 14 15 H -0.26 -8.85 7.11 99.48 0.71 -8.14 14 16 H -0.26 -8.35 7.11 99.48 0.71 -7.65 14 17 H -0.26 -8.65 7.11 99.48 0.71 -7.94 14 18 H 0.03 1.30 7.85 -2.39 -0.02 1.28 14 19 H 0.04 1.31 8.14 -2.39 -0.02 1.29 14 20 H 0.11 3.22 8.14 -2.39 -0.02 3.20 14 21 H 0.16 6.23 8.06 -2.91 -0.02 6.20 14 22 H 0.13 6.44 6.22 -2.91 -0.02 6.42 14 23 H 0.30 12.48 8.29 -92.71 -0.77 11.71 14 Total: -1.00 -56.64 227.79 4.33 -52.31 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.23 Total: 10.59 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 3.67 Total: -13.16 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: -1.69 Total: -67.42 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.83 Total: -16.07 kcal Atomic # 14 Polarization: 34.20 SS G_CDS: 2.03 Total: 36.23 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -0.08 Total: -2.49 kcal Total: -56.64 4.33 -52.31 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238400887.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.753 kcal (2) G-P(sol) polarization free energy of solvation -56.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds