Wall clock time and date at job start Mon Mar 30 2020 02:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35926 * 116.99848 * 2 1 4 4 C 1.39149 * 120.32851 * 359.97438 * 3 2 1 5 5 N 1.32017 * 121.26697 * 180.02562 * 4 3 2 6 6 C 1.31615 * 122.00886 * 0.02562 * 5 4 3 7 7 Cl 1.73602 * 119.75745 * 179.97438 * 6 5 4 8 8 C 1.40928 * 120.48360 * 359.97438 * 6 5 4 9 9 C 1.41343 * 120.63926 * 179.97438 * 8 6 5 10 10 H 1.07995 * 120.00360 * 335.35608 * 9 8 6 11 11 C 1.39944 * 119.99977 * 155.35182 * 9 8 6 12 12 N 1.30840 * 119.99831 * 343.83834 * 11 9 8 13 13 Si 1.86796 * 119.99901 * 163.83464 * 11 9 8 14 14 H 1.48501 * 109.46981 * 90.00187 * 13 11 9 15 15 H 1.48497 * 109.46880 * 209.99958 * 13 11 9 16 16 H 1.48502 * 109.47244 * 330.00359 * 13 11 9 17 17 C 1.38466 * 120.32747 * 180.02562 * 3 2 1 18 18 H 1.09001 * 109.47223 * 300.00401 * 1 2 3 19 19 H 1.08998 * 109.46776 * 60.00193 * 1 2 3 20 20 H 1.08999 * 109.47016 * 179.97438 * 1 2 3 21 21 H 1.08002 * 119.36969 * 359.74861 * 4 3 2 22 22 H 0.96996 * 119.99703 * 185.12836 * 12 11 9 23 23 H 1.08006 * 120.90883 * 359.95679 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2949 2.3824 -0.0005 5 7 1.8749 3.5684 -0.0011 6 6 3.1839 3.7048 -0.0016 7 17 3.8847 5.2931 -0.0029 8 6 4.0209 2.5709 -0.0011 9 6 5.4271 2.7136 -0.0022 10 1 5.8783 3.6135 -0.3933 11 6 6.2348 1.6888 0.5037 12 7 5.7116 0.7540 1.2548 13 14 8.0597 1.6556 0.1064 14 1 8.8054 2.4162 1.1412 15 1 8.5363 0.2494 0.0861 16 1 8.2881 2.2751 -1.2238 17 6 3.4284 1.2915 -0.0005 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 0.2167 2.3202 -0.0051 22 1 6.2825 0.0864 1.6663 23 1 4.0361 0.3986 -0.0003 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238407083.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:16 Heat of formation + Delta-G solvation = -45.324461 kcal Electronic energy + Delta-G solvation = -11833.858292 eV Core-core repulsion = 9479.071169 eV Total energy + Delta-G solvation = -2354.787123 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.91781 -38.76013 -36.88199 -36.07778 -32.60949 -31.06933 -28.31473 -27.29667 -23.97702 -23.01594 -19.67959 -18.16015 -17.74788 -17.49997 -16.60656 -16.48950 -15.01908 -14.89013 -14.64191 -14.00359 -13.58853 -13.42547 -12.85885 -12.59496 -12.55675 -12.43898 -12.00353 -11.75389 -11.68011 -11.27710 -10.22064 -10.00243 -9.04893 -8.75166 -6.59463 0.60937 0.84017 1.40060 1.49229 1.51050 1.56988 2.16292 2.56603 2.64634 3.46024 4.12353 4.24512 4.46693 4.50514 4.63303 4.74244 4.97046 5.09743 5.35672 5.59384 5.68717 6.18395 6.54677 6.61033 6.67666 7.35139 8.14064 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.026448 B = 0.013275 C = 0.009060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.432178 B = 2108.695072 C = 3089.826757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.097 3.903 4 C -0.102 4.102 5 N -0.445 5.445 6 C 0.014 3.986 7 Cl -0.065 7.065 8 C 0.082 3.918 9 C -0.449 4.449 10 H 0.098 0.902 11 C 0.036 3.964 12 N -0.802 5.802 13 Si 0.990 3.010 14 H -0.257 1.257 15 H -0.263 1.263 16 H -0.254 1.254 17 C -0.196 4.196 18 H 0.058 0.942 19 H 0.061 0.939 20 H 0.123 0.877 21 H 0.165 0.835 22 H 0.298 0.702 23 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 -1.862 -1.457 2.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.050 3.950 4 C -0.260 4.260 5 N -0.155 5.155 6 C -0.155 4.155 7 Cl -0.038 7.038 8 C 0.076 3.924 9 C -0.477 4.477 10 H 0.116 0.884 11 C -0.183 4.183 12 N -0.425 5.425 13 Si 0.809 3.191 14 H -0.182 1.182 15 H -0.187 1.187 16 H -0.177 1.177 17 C -0.222 4.222 18 H 0.077 0.923 19 H 0.080 0.920 20 H 0.141 0.859 21 H 0.182 0.818 22 H 0.109 0.891 23 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.192 -1.464 -1.358 2.965 hybrid contribution 0.848 -0.471 0.080 0.973 sum -1.344 -1.935 -1.278 2.680 Atomic orbital electron populations 1.23279 0.76904 1.05259 1.01943 1.85999 1.23270 1.26623 1.89071 1.19950 0.92914 0.85352 0.96753 1.22130 0.99424 0.85692 1.18768 1.66134 1.11891 1.28041 1.09454 1.21557 0.89268 0.85666 1.19028 1.98206 1.82927 1.25048 1.97581 1.18160 0.94949 0.89416 0.89888 1.20002 0.90347 1.03337 1.33998 0.88360 1.26984 1.06912 0.92444 0.91969 1.69822 1.40682 1.11876 1.20150 0.85060 0.74467 0.79127 0.80432 1.18154 1.18744 1.17700 1.20909 0.90852 0.98130 1.12358 0.92337 0.92012 0.85896 0.81798 0.89094 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.82 113.37 1.11 1.67 14 2 O -0.34 -13.72 10.50 -92.72 -0.97 -14.70 14 3 C 0.10 4.62 6.70 22.54 0.15 4.77 14 4 C -0.10 -4.65 10.22 84.88 0.87 -3.79 14 5 N -0.44 -22.26 10.31 -184.07 -1.90 -24.16 14 6 C 0.01 0.71 7.35 85.38 0.63 1.33 14 7 Cl -0.07 -2.96 27.75 -2.72 -0.08 -3.04 14 8 C 0.08 4.40 5.59 -21.18 -0.12 4.28 14 9 C -0.45 -23.02 8.55 23.45 0.20 -22.81 14 10 H 0.10 4.83 7.11 -2.91 -0.02 4.81 14 11 C 0.04 1.69 5.20 85.25 0.44 2.13 14 12 N -0.80 -39.60 10.91 21.83 0.24 -39.36 14 13 Si 0.99 35.49 29.59 68.60 2.03 37.52 14 14 H -0.26 -8.85 7.11 99.48 0.71 -8.14 14 15 H -0.26 -8.94 7.11 99.48 0.71 -8.23 14 16 H -0.25 -8.93 7.11 99.48 0.71 -8.22 14 17 C -0.20 -10.36 8.75 23.00 0.20 -10.16 14 18 H 0.06 1.50 7.67 -2.39 -0.02 1.49 14 19 H 0.06 1.54 7.66 -2.39 -0.02 1.52 14 20 H 0.12 2.49 8.14 -2.39 -0.02 2.47 14 21 H 0.17 6.12 6.28 -2.91 -0.02 6.10 14 22 H 0.30 13.10 8.30 -92.71 -0.77 12.33 14 23 H 0.13 6.94 6.22 -2.91 -0.02 6.93 14 Total: -1.00 -59.30 223.94 4.04 -55.26 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.24 Total: 11.04 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 3.48 Total: -22.56 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: -1.66 Total: -63.52 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.97 Total: -14.70 kcal Atomic # 14 Polarization: 35.49 SS G_CDS: 2.03 Total: 37.52 kcal Atomic # 17 Polarization: -2.96 SS G_CDS: -0.08 Total: -3.04 kcal Total: -59.30 4.04 -55.26 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238407083.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.936 kcal (2) G-P(sol) polarization free energy of solvation -59.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds