Wall clock time and date at job start Mon Mar 30 2020 02:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35658 * 117.00071 * 2 1 4 4 C 1.38555 * 120.63902 * 0.02562 * 3 2 1 5 5 N 1.31848 * 120.90552 * 179.97438 * 4 3 2 6 6 C 1.32218 * 122.39312 * 359.97438 * 5 4 3 7 7 Cl 1.73603 * 119.41663 * 180.02562 * 6 5 4 8 8 C 1.37673 * 121.17304 * 0.02562 * 6 5 4 9 9 C 1.41068 * 118.92956 * 0.27411 * 8 6 5 10 10 C 1.41211 * 121.06141 * 179.72643 * 9 8 6 11 11 H 1.08003 * 120.00516 * 155.97212 * 10 9 8 12 12 C 1.40062 * 119.99824 * 335.96670 * 10 9 8 13 13 N 1.30764 * 119.99728 * 343.27211 * 12 10 9 14 14 Si 1.86793 * 120.00083 * 163.27062 * 12 10 9 15 15 H 1.48500 * 109.47258 * 60.00350 * 14 12 10 16 16 H 1.48498 * 109.47175 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47449 * 300.00167 * 14 12 10 18 18 H 1.08994 * 109.46980 * 60.00133 * 1 2 3 19 19 H 1.08999 * 109.46676 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46599 * 299.99762 * 1 2 3 21 21 H 1.08001 * 119.54940 * 359.97438 * 4 3 2 22 22 H 1.07998 * 120.53588 * 180.02562 * 8 6 5 23 23 H 0.96998 * 120.00089 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.3033 2.3791 0.0005 5 7 1.8964 3.5566 0.0010 6 6 3.2122 3.6870 0.0016 7 17 3.9116 5.2759 0.0029 8 6 4.0375 2.5851 0.0011 9 6 3.4584 1.2988 -0.0059 10 6 4.2623 0.1378 -0.0124 11 1 3.8675 -0.7946 0.3633 12 6 5.5716 0.1955 -0.5064 13 7 5.9460 1.2038 -1.2501 14 14 6.7830 -1.1679 -0.1028 15 1 6.2626 -2.4605 -0.6163 16 1 8.0913 -0.8723 -0.7402 17 1 6.9585 -1.2546 1.3692 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 0.2246 2.3261 0.0005 22 1 5.1110 2.7035 0.0019 23 1 6.8529 1.2440 -1.5919 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238407737.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:29 Heat of formation + Delta-G solvation = -43.591889 kcal Electronic energy + Delta-G solvation = -11862.472246 eV Core-core repulsion = 9507.760253 eV Total energy + Delta-G solvation = -2354.711993 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.88261 -38.58722 -37.14075 -36.10257 -32.65915 -30.67321 -28.16628 -27.85676 -23.61938 -23.16901 -19.71207 -18.36985 -17.84738 -17.10965 -16.44189 -16.31163 -15.08979 -14.79320 -14.66515 -14.46167 -13.54311 -13.21981 -12.85725 -12.67286 -12.51121 -12.31257 -12.02870 -11.89505 -11.76619 -11.23586 -10.12565 -10.01173 -9.06760 -8.73392 -6.54061 0.61410 0.75897 1.22429 1.40541 1.52456 1.55367 2.18274 2.62509 2.78508 3.45536 3.94826 4.30126 4.50461 4.51838 4.69743 4.78078 5.07491 5.07817 5.20521 5.45878 5.89399 6.18454 6.50386 6.65660 6.92416 7.33927 8.18182 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.022811 B = 0.014147 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.190083 B = 1978.791374 C = 3127.351027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.327 6.327 3 C -0.037 4.037 4 C 0.036 3.964 5 N -0.561 5.561 6 C 0.149 3.851 7 Cl -0.066 7.066 8 C -0.202 4.202 9 C 0.088 3.912 10 C -0.457 4.457 11 H 0.088 0.912 12 C 0.036 3.964 13 N -0.805 5.805 14 Si 0.991 3.009 15 H -0.258 1.258 16 H -0.264 1.264 17 H -0.258 1.258 18 H 0.054 0.946 19 H 0.118 0.882 20 H 0.057 0.943 21 H 0.168 0.832 22 H 0.131 0.869 23 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 -2.387 1.554 3.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.241 6.241 3 C -0.086 4.086 4 C -0.117 4.117 5 N -0.279 5.279 6 C -0.011 4.011 7 Cl -0.038 7.038 8 C -0.226 4.226 9 C 0.080 3.920 10 C -0.487 4.487 11 H 0.106 0.894 12 C -0.182 4.182 13 N -0.430 5.430 14 Si 0.811 3.189 15 H -0.182 1.182 16 H -0.188 1.188 17 H -0.182 1.182 18 H 0.073 0.927 19 H 0.136 0.864 20 H 0.076 0.924 21 H 0.185 0.815 22 H 0.149 0.851 23 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.736 -1.581 1.404 3.458 hybrid contribution 0.782 -0.654 -0.041 1.020 sum -1.954 -2.235 1.363 3.266 Atomic orbital electron populations 1.23204 0.77910 1.04891 1.01397 1.85912 1.22006 1.26301 1.89873 1.20303 0.92857 0.85466 1.09979 1.22386 0.99640 0.85967 1.03683 1.66527 1.10452 1.27621 1.23289 1.21211 0.90350 0.85589 1.03975 1.98265 1.82488 1.25913 1.97155 1.21624 1.00363 0.89879 1.10764 1.17635 0.89157 0.93994 0.91254 1.19695 0.97263 0.96206 1.35492 0.89433 1.26930 1.00166 0.99654 0.91468 1.69786 1.20785 1.30759 1.21681 0.85101 0.76270 0.77625 0.79926 1.18170 1.18775 1.18178 0.92749 0.86416 0.92428 0.81501 0.85106 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.82 113.37 1.11 1.71 14 2 O -0.33 -14.10 9.90 -89.74 -0.89 -14.99 14 3 C -0.04 -1.82 6.75 23.18 0.16 -1.66 14 4 C 0.04 1.61 10.22 84.77 0.87 2.47 14 5 N -0.56 -27.33 10.30 -186.78 -1.92 -29.25 14 6 C 0.15 7.43 7.26 84.50 0.61 8.04 14 7 Cl -0.07 -2.81 29.09 -2.72 -0.08 -2.89 14 8 C -0.20 -10.66 8.53 22.83 0.19 -10.47 14 9 C 0.09 4.72 5.61 -21.02 -0.12 4.60 14 10 C -0.46 -23.80 8.81 23.44 0.21 -23.59 14 11 H 0.09 4.46 7.71 -2.91 -0.02 4.44 14 12 C 0.04 1.73 5.20 85.29 0.44 2.18 14 13 N -0.81 -40.03 10.93 21.85 0.24 -39.79 14 14 Si 0.99 35.97 29.59 68.60 2.03 38.00 14 15 H -0.26 -9.09 7.11 99.48 0.71 -8.38 14 16 H -0.26 -8.96 7.11 99.48 0.71 -8.25 14 17 H -0.26 -9.16 7.11 99.48 0.71 -8.45 14 18 H 0.05 1.47 7.68 -2.39 -0.02 1.45 14 19 H 0.12 2.64 8.14 -2.39 -0.02 2.62 14 20 H 0.06 1.51 7.68 -2.38 -0.02 1.49 14 21 H 0.17 6.11 6.32 -2.91 -0.02 6.09 14 22 H 0.13 7.05 6.21 -2.91 -0.02 7.03 14 23 H 0.30 13.21 8.29 -92.71 -0.77 12.44 14 Total: -1.00 -59.24 225.37 4.09 -55.15 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.24 Total: 10.48 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 3.48 Total: -16.71 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: -1.69 Total: -69.04 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.89 Total: -14.99 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -0.08 Total: -2.89 kcal Total: -59.24 4.09 -55.15 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238407737.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.560 kcal (2) G-P(sol) polarization free energy of solvation -59.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds