Wall clock time and date at job start Mon Mar 30 2020 02:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35507 * 117.00358 * 2 1 4 4 N 1.32559 * 119.41045 * 359.73293 * 3 2 1 5 5 C 1.31507 * 121.76524 * 179.70669 * 4 3 2 6 6 C 1.40772 * 120.36441 * 0.56201 * 5 4 3 7 7 C 1.41262 * 120.58724 * 179.74542 * 6 5 4 8 8 H 1.08002 * 119.99599 * 335.70316 * 7 6 5 9 9 C 1.39882 * 120.00330 * 155.70366 * 7 6 5 10 10 N 1.30887 * 119.99742 * 343.40886 * 9 7 6 11 11 Si 1.86796 * 120.00342 * 163.41449 * 9 7 6 12 12 H 1.48504 * 109.46900 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47277 * 120.00067 * 11 9 7 14 14 H 1.48500 * 109.47012 * 239.99944 * 11 9 7 15 15 C 1.41215 * 118.82766 * 359.72466 * 6 5 4 16 16 C 1.36795 * 118.37423 * 0.02562 * 15 6 5 17 17 Cl 1.73597 * 120.25049 * 179.97438 * 16 15 6 18 18 H 1.08998 * 109.46964 * 59.99317 * 1 2 3 19 19 H 1.08997 * 109.47043 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46704 * 299.99696 * 1 2 3 21 21 H 1.07998 * 119.81846 * 180.28579 * 5 4 3 22 22 H 0.97001 * 119.99887 * 179.97438 * 10 9 7 23 23 H 1.07997 * 120.81191 * 180.02562 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2073 0.0000 4 7 1.3110 2.3116 -0.0054 5 6 1.8594 3.5069 0.0001 6 6 3.2601 3.6471 0.0001 7 6 3.8542 4.9287 0.0005 8 1 3.3078 5.7773 -0.3840 9 6 5.1501 5.0988 0.4990 10 7 5.6891 4.1724 1.2503 11 14 6.1114 6.6480 0.0925 12 1 5.2845 7.5322 -0.7677 13 1 6.4562 7.3606 1.3489 14 1 7.3578 6.2826 -0.6274 15 6 4.0609 2.4840 0.0000 16 6 3.4381 1.2660 -0.0005 17 17 4.3752 -0.1954 -0.0013 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.2317 4.3857 0.0001 22 1 6.5879 4.2902 1.5956 23 1 5.1386 2.5543 0.0004 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238409999.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:50 Heat of formation + Delta-G solvation = -25.111979 kcal Electronic energy + Delta-G solvation = -11789.607081 eV Core-core repulsion = 9435.696437 eV Total energy + Delta-G solvation = -2353.910644 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.12391 -36.79551 -35.49403 -33.96719 -30.69347 -29.78214 -26.86260 -25.06439 -21.97294 -21.44151 -17.60615 -17.25021 -15.96581 -15.26298 -15.01333 -14.30998 -13.41215 -13.27074 -12.63159 -12.44238 -11.92274 -11.52268 -11.31332 -11.07709 -10.97450 -10.82916 -10.39999 -10.23049 -9.86946 -9.40497 -8.51460 -8.27276 -7.37170 -6.94886 -4.54465 2.36230 2.64862 2.98550 3.02853 3.05367 3.21039 3.78504 4.18620 4.41375 5.36669 5.68838 5.83642 5.92715 6.17552 6.35136 6.51545 6.78608 6.91817 7.02346 7.49951 7.64276 8.05752 8.31971 8.53332 8.56268 9.21361 9.96536 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.043501 B = 0.010038 C = 0.008351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.511224 B = 2788.670874 C = 3352.051971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.316 6.316 3 C 0.186 3.814 4 N -0.500 5.500 5 C 0.006 3.994 6 C 0.051 3.949 7 C -0.445 4.445 8 H 0.087 0.913 9 C 0.072 3.928 10 N -0.789 5.789 11 Si 0.915 3.085 12 H -0.258 1.258 13 H -0.273 1.273 14 H -0.270 1.270 15 C -0.101 4.101 16 C -0.056 4.056 17 Cl -0.099 7.099 18 H 0.045 0.955 19 H 0.078 0.922 20 H 0.046 0.954 21 H 0.138 0.862 22 H 0.286 0.714 23 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 -1.650 -1.503 2.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.226 6.226 3 C 0.007 3.993 4 N -0.221 5.221 5 C -0.153 4.153 6 C 0.046 3.954 7 C -0.475 4.475 8 H 0.105 0.895 9 C -0.147 4.147 10 N -0.414 5.414 11 Si 0.739 3.261 12 H -0.182 1.182 13 H -0.198 1.198 14 H -0.195 1.195 15 C -0.128 4.128 16 C -0.085 4.085 17 Cl -0.070 7.070 18 H 0.064 0.936 19 H 0.097 0.903 20 H 0.064 0.936 21 H 0.155 0.845 22 H 0.097 0.903 23 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.069 -2.170 -1.366 3.294 hybrid contribution 1.243 0.765 -0.012 1.460 sum -0.826 -1.404 -1.378 2.134 Atomic orbital electron populations 1.22492 0.79823 1.00849 1.01306 1.86085 1.20552 1.25427 1.90512 1.18864 0.87170 0.84548 1.08703 1.66844 1.39913 0.98864 1.16506 1.22317 0.92724 0.91961 1.08283 1.18390 0.91573 0.93747 0.91705 1.19477 0.98583 0.94269 1.35134 0.89460 1.25994 0.97752 0.98573 0.92395 1.69786 1.15555 1.33843 1.22185 0.86134 0.79634 0.80973 0.79348 1.18181 1.19787 1.19518 1.21371 1.01432 0.88526 1.01437 1.20474 0.88401 0.87778 1.11876 1.98261 1.73330 1.38008 1.97443 0.93585 0.90343 0.93572 0.84452 0.90315 0.83654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.89 10.37 101.05 1.05 1.94 14 2 O -0.32 -6.91 9.92 -18.21 -0.18 -7.09 14 3 C 0.19 4.49 7.50 -16.76 -0.13 4.37 14 4 N -0.50 -12.03 9.17 -12.55 -0.12 -12.14 14 5 C 0.01 0.15 10.98 -16.73 -0.18 -0.04 14 6 C 0.05 1.28 5.59 -106.66 -0.60 0.68 14 7 C -0.45 -10.91 9.07 -37.82 -0.34 -11.25 14 8 H 0.09 2.01 7.90 -52.49 -0.41 1.60 14 9 C 0.07 1.68 5.19 -17.34 -0.09 1.59 14 10 N -0.79 -19.23 10.90 55.54 0.61 -18.62 14 11 Si 0.92 17.44 29.59 -169.99 -5.03 12.41 14 12 H -0.26 -4.85 7.11 56.52 0.40 -4.45 14 13 H -0.27 -5.14 7.11 56.52 0.40 -4.74 14 14 H -0.27 -5.11 7.11 56.52 0.40 -4.70 14 15 C -0.10 -2.56 8.53 -38.97 -0.33 -2.90 14 16 C -0.06 -1.36 6.31 -39.63 -0.25 -1.61 14 17 Cl -0.10 -2.11 28.50 -51.86 -1.48 -3.59 14 18 H 0.05 0.78 8.09 -51.93 -0.42 0.36 14 19 H 0.08 1.07 8.14 -51.93 -0.42 0.65 14 20 H 0.05 0.79 8.10 -51.93 -0.42 0.37 14 21 H 0.14 2.96 8.06 -52.49 -0.42 2.54 14 22 H 0.29 6.31 8.30 -40.82 -0.34 5.97 14 23 H 0.15 3.74 6.20 -52.49 -0.33 3.42 14 LS Contribution 227.71 15.07 3.43 3.43 Total: -1.00 -26.61 227.71 -5.20 -31.81 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -1.56 Total: 1.01 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.87 Total: -7.22 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.49 Total: -30.76 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.18 Total: -7.09 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -1.48 Total: -3.59 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -26.61 -5.20 -31.81 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238409999.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.702 kcal (2) G-P(sol) polarization free energy of solvation -26.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds