Wall clock time and date at job start Mon Mar 30 2020 02:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 11 11 N 1.46892 * 109.47371 * 299.99695 * 9 7 2 12 12 C 1.50707 * 109.46656 * 179.97438 * 9 7 2 13 13 C 1.38593 * 120.78111 * 79.72620 * 12 9 7 14 14 N 1.32327 * 119.12034 * 179.74076 * 13 12 9 15 15 C 1.31926 * 120.80452 * 0.51881 * 14 13 12 16 16 Cl 1.73600 * 119.14414 * 179.73371 * 15 14 13 17 17 N 1.31926 * 121.71363 * 359.75379 * 15 14 13 18 18 C 1.32318 * 120.80843 * 359.97438 * 17 15 14 19 19 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 20 20 H 1.00903 * 110.99815 * 176.05001 * 11 9 7 21 21 H 1.00896 * 111.00150 * 299.99781 * 11 9 7 22 22 H 1.08004 * 120.44120 * 359.97438 * 13 12 9 23 23 H 1.07998 * 120.44424 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8753 -0.6803 0.8889 11 7 4.0007 -0.5012 -1.2005 12 6 4.0140 -2.6148 -0.0010 13 6 4.0497 -3.3545 -1.1724 14 7 4.5019 -4.5976 -1.1355 15 6 4.9056 -5.1363 -0.0009 16 17 5.4844 -6.7729 -0.0009 17 7 4.8804 -4.4637 1.1337 18 6 4.4458 -3.2144 1.1715 19 1 -0.4849 0.8401 -0.0004 20 1 5.0073 -0.4311 -1.1924 21 1 3.6770 -0.9586 -2.0396 22 1 3.7165 -2.9210 -2.1038 23 1 4.4282 -2.6692 2.1036 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238623483.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:20 Heat of formation + Delta-G solvation = 26.059027 kcal Electronic energy + Delta-G solvation = -11724.395687 eV Core-core repulsion = 9404.996736 eV Total energy + Delta-G solvation = -2319.398951 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.13341 -38.07883 -37.07152 -34.94702 -34.08918 -31.73253 -28.44291 -25.88686 -25.52146 -22.31005 -19.24903 -19.00090 -18.53222 -16.79577 -16.33048 -16.21178 -15.67284 -15.23479 -14.71789 -14.30648 -13.77914 -13.18158 -12.92126 -12.69681 -12.55328 -12.23327 -12.02831 -11.74123 -11.47263 -10.73559 -10.43181 -10.15862 -8.96586 -8.22514 -6.39171 -0.29670 -0.07868 0.33503 1.58185 1.67025 2.00551 2.54256 2.63802 2.99751 3.17177 3.57793 3.64409 3.94759 4.01596 4.20725 4.73707 5.13297 5.14504 5.50858 5.70701 6.11498 6.43478 6.71363 6.76783 7.00475 7.40160 8.90206 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.068163 B = 0.007727 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.680217 B = 3622.997750 C = 3694.331770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.029 3.971 3 Si 0.931 3.069 4 H -0.299 1.299 5 H -0.149 1.149 6 H -0.320 1.320 7 C -0.522 4.522 8 H 0.023 0.977 9 C 0.242 3.758 10 H 0.066 0.934 11 N -0.834 5.834 12 C -0.175 4.175 13 C 0.158 3.842 14 N -0.516 5.516 15 C 0.325 3.675 16 Cl 0.025 6.975 17 N -0.516 5.516 18 C 0.158 3.842 19 H 0.263 0.737 20 H 0.336 0.664 21 H 0.339 0.661 22 H 0.188 0.812 23 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.669 -5.131 -0.895 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.170 4.170 3 Si 0.756 3.244 4 H -0.227 1.227 5 H -0.070 1.070 6 H -0.249 1.249 7 C -0.560 4.560 8 H 0.041 0.959 9 C 0.130 3.870 10 H 0.084 0.916 11 N -0.365 5.365 12 C -0.181 4.181 13 C -0.007 4.007 14 N -0.233 5.233 15 C 0.031 3.969 16 Cl 0.053 6.947 17 N -0.232 5.232 18 C -0.008 4.008 19 H 0.071 0.929 20 H 0.149 0.851 21 H 0.154 0.846 22 H 0.205 0.795 23 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 12.528 -5.520 -0.663 13.706 hybrid contribution -0.439 0.254 -0.059 0.510 sum 12.089 -5.266 -0.722 13.206 Atomic orbital electron populations 1.70104 1.09170 1.28299 1.51259 1.25923 0.95047 1.04104 0.91961 0.86295 0.84641 0.75652 0.77768 1.22688 1.06952 1.24924 1.20851 0.89779 0.92495 1.52900 0.95907 1.18186 0.93013 0.83363 0.92459 0.91604 1.59701 1.14923 1.56988 1.04934 1.23028 0.97212 1.02543 0.95315 1.23267 0.90363 0.87187 0.99876 1.67871 1.12846 1.13550 1.29035 1.23110 0.96478 0.91036 0.86264 1.98394 1.85807 1.12139 1.98348 1.67882 1.17483 1.09252 1.28592 1.23574 0.89135 0.88406 0.99636 0.92851 0.85074 0.84645 0.79525 0.78389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.22 13.96 21.45 0.30 -56.92 14 2 C 0.03 1.56 5.47 84.65 0.46 2.03 14 3 Si 0.93 40.50 26.94 68.60 1.85 42.35 14 4 H -0.30 -13.15 7.11 99.48 0.71 -12.44 14 5 H -0.15 -5.46 5.17 99.48 0.51 -4.94 14 6 H -0.32 -14.89 7.11 99.48 0.71 -14.18 14 7 C -0.52 -26.45 9.29 25.60 0.24 -26.21 14 8 H 0.02 1.34 7.98 -2.91 -0.02 1.31 14 9 C 0.24 8.98 2.38 43.43 0.10 9.09 14 10 H 0.07 2.37 7.47 -2.38 -0.02 2.35 14 11 N -0.83 -26.44 5.67 -174.96 -0.99 -27.44 14 12 C -0.17 -5.87 4.90 -19.69 -0.10 -5.97 14 13 C 0.16 5.14 10.57 84.70 0.90 6.04 14 14 N -0.52 -17.43 10.41 -190.72 -1.98 -19.41 14 15 C 0.32 10.77 8.18 180.80 1.48 12.25 14 16 Cl 0.03 0.70 29.27 -2.72 -0.08 0.62 14 17 N -0.52 -17.11 10.41 -190.72 -1.98 -19.10 14 18 C 0.16 5.00 10.97 84.71 0.93 5.93 14 19 H 0.26 15.10 8.31 -92.71 -0.77 14.33 14 20 H 0.34 8.46 9.06 -89.69 -0.81 7.65 14 21 H 0.34 10.29 7.44 -89.70 -0.67 9.62 14 22 H 0.19 5.36 6.80 -2.91 -0.02 5.34 14 23 H 0.20 5.17 8.06 -2.91 -0.02 5.15 14 Total: -1.00 -63.28 222.92 0.71 -62.56 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -0.41 Total: 14.18 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 4.01 Total: 3.15 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -4.66 Total: -122.86 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 1.85 Total: 42.35 kcal Atomic # 17 Polarization: 0.70 SS G_CDS: -0.08 Total: 0.62 kcal Total: -63.28 0.71 -62.56 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238623483.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.624 kcal (2) G-P(sol) polarization free energy of solvation -63.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds