Wall clock time and date at job start Mon Mar 30 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46904 * 109.47262 * 2 1 4 4 C 1.46895 * 111.00179 * 196.28646 * 3 2 1 5 5 C 1.50695 * 109.47354 * 78.90618 * 4 3 2 6 6 H 1.07997 * 119.99862 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00270 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99718 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99999 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46872 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.46983 * 299.99697 * 9 7 5 12 12 H 1.48491 * 109.47216 * 60.00001 * 9 7 5 13 13 C 1.46903 * 110.99728 * 72.33174 * 3 2 1 14 14 H 1.08999 * 110.01489 * 323.86148 * 13 3 2 15 15 C 1.54261 * 110.03111 * 85.25508 * 13 3 2 16 16 C 1.54895 * 104.19444 * 142.89456 * 15 13 3 17 17 C 1.54882 * 102.74664 * 322.05450 * 16 15 13 18 18 C 1.53876 * 110.02905 * 202.47150 * 13 3 2 19 19 H 1.09000 * 110.03312 * 121.43317 * 18 13 3 20 20 N 1.46896 * 110.03209 * 359.97438 * 18 13 3 21 21 H 1.08995 * 109.47513 * 293.78105 * 1 2 3 22 22 H 1.09003 * 109.47011 * 53.78224 * 1 2 3 23 23 H 1.09001 * 109.47248 * 173.77838 * 1 2 3 24 24 H 1.09002 * 109.47376 * 239.99873 * 2 1 3 25 25 H 1.08999 * 109.46967 * 119.99848 * 2 1 3 26 26 H 1.09012 * 109.47181 * 318.90772 * 4 3 2 27 27 H 1.08999 * 109.47590 * 198.91005 * 4 3 2 28 28 H 0.96997 * 120.00370 * 0.02562 * 8 7 5 29 29 H 1.09000 * 110.48421 * 261.56570 * 15 13 3 30 30 H 1.09002 * 110.49272 * 24.21220 * 15 13 3 31 31 H 1.08995 * 110.75580 * 80.36884 * 16 15 13 32 32 H 1.09003 * 110.75235 * 203.74368 * 16 15 13 33 33 H 1.09002 * 110.48706 * 156.62225 * 17 16 15 34 34 H 1.09008 * 110.48957 * 279.13244 * 17 16 15 35 35 H 1.00905 * 111.00061 * 171.35393 * 20 18 13 36 36 H 1.00901 * 111.00717 * 295.30576 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4362 1.4426 -0.3846 5 6 3.5556 1.3206 -1.8818 6 1 2.6679 1.2117 -2.4872 7 6 4.7981 1.3481 -2.4789 8 7 5.8791 1.4812 -1.7417 9 14 4.9460 1.1976 -4.3350 10 1 6.3781 1.2557 -4.7237 11 1 4.3654 -0.0965 -4.7745 12 1 4.2123 2.3146 -4.9822 13 6 1.8027 2.0200 1.3068 14 1 0.8628 1.6751 1.7377 15 6 2.9725 1.6885 2.2561 16 6 3.1820 2.9899 3.0696 17 6 2.9407 4.0961 2.0128 18 6 1.7812 3.5508 1.1518 19 1 0.8312 3.9489 1.5084 20 7 1.9847 3.9169 -0.2562 21 1 -0.3634 0.4144 0.9403 22 1 -0.3633 0.6072 -0.8291 23 1 -0.3634 -1.0216 -0.1114 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.9754 0.6230 0.0908 27 1 3.8619 2.3928 -0.0623 28 1 5.8023 1.5597 -0.7780 29 1 2.7053 0.8642 2.9174 30 1 3.8696 1.4463 1.6862 31 1 2.4538 3.0619 3.8774 32 1 4.1989 3.0427 3.4587 33 1 2.6503 5.0289 2.4963 34 1 3.8334 4.2444 1.4049 35 1 1.8340 4.9045 -0.3985 36 1 2.9027 3.6421 -0.5724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249850701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:45 Heat of formation + Delta-G solvation = 5.135409 kcal Electronic energy + Delta-G solvation = -15378.328413 eV Core-core repulsion = 13090.238176 eV Total energy + Delta-G solvation = -2288.090238 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.15618 -35.09821 -32.86528 -31.87520 -29.89162 -27.53282 -26.09486 -24.65997 -22.50141 -21.35189 -20.16125 -18.29913 -16.85232 -16.11244 -15.35543 -14.14057 -14.08760 -13.78225 -13.61761 -13.24905 -12.91209 -12.50286 -12.09586 -11.65894 -11.48944 -11.08661 -10.94651 -10.84225 -10.73051 -10.66844 -10.48296 -10.41132 -10.04980 -9.92521 -9.67282 -8.57636 -8.29215 -7.72674 -7.02672 -6.27734 -3.95956 3.49681 3.51690 3.70041 4.56928 4.77574 4.98743 5.04111 5.28229 5.45053 5.52619 5.67782 5.76439 5.82524 5.88687 5.92763 5.96291 6.07824 6.14547 6.18544 6.26669 6.30276 6.43952 6.60722 6.69733 6.72991 6.80397 7.05973 7.15280 7.85277 8.10202 8.20912 8.35588 8.45435 8.75835 8.97259 9.73329 11.09511 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028724 B = 0.011135 C = 0.009612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.562443 B = 2513.991311 C = 2912.313410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.056 3.944 3 N -0.497 5.497 4 C 0.188 3.812 5 C -0.572 4.572 6 H 0.058 0.942 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 1.070 2.930 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.288 1.288 13 C 0.083 3.917 14 H 0.070 0.930 15 C -0.169 4.169 16 C -0.116 4.116 17 C -0.163 4.163 18 C 0.103 3.897 19 H 0.070 0.930 20 N -0.819 5.819 21 H 0.041 0.959 22 H 0.063 0.937 23 H 0.045 0.955 24 H 0.078 0.922 25 H 0.012 0.988 26 H -0.022 1.022 27 H 0.018 0.982 28 H 0.263 0.737 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.317 0.683 36 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 2.164 7.177 10.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 N -0.219 5.219 4 C 0.063 3.937 5 C -0.611 4.611 6 H 0.076 0.924 7 C -0.192 4.192 8 N -0.558 5.558 9 Si 0.899 3.101 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.214 1.214 13 C -0.027 4.027 14 H 0.088 0.912 15 C -0.208 4.208 16 C -0.155 4.155 17 C -0.203 4.203 18 C -0.011 4.011 19 H 0.088 0.912 20 N -0.351 5.351 21 H 0.060 0.940 22 H 0.082 0.918 23 H 0.064 0.936 24 H 0.096 0.904 25 H 0.030 0.970 26 H -0.005 1.005 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.128 0.872 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.836 1.873 5.361 8.887 hybrid contribution 0.180 0.184 2.431 2.444 sum -6.656 2.057 7.791 10.452 Atomic orbital electron populations 1.21763 0.96461 1.00138 1.01456 1.21968 0.94523 0.90728 1.00046 1.62087 1.21402 1.14575 1.23840 1.19829 0.83020 0.94213 0.96666 1.22013 0.94852 1.52743 0.91494 0.92366 1.25798 0.92151 0.94453 1.06832 1.70819 1.30327 1.47416 1.07195 0.83512 0.75637 0.76492 0.74446 1.21152 1.21643 1.21428 1.22397 0.96492 0.94234 0.89608 0.91229 1.23272 1.01648 0.97069 0.98849 1.22299 1.00612 0.95342 0.97205 1.23366 1.00236 0.97996 0.98705 1.21972 0.95949 0.94730 0.88444 0.91221 1.58738 1.39882 1.19526 1.16957 0.93997 0.91839 0.93640 0.90396 0.96956 1.00478 0.96407 0.92646 0.92707 0.89828 0.92073 0.92294 0.92442 0.91688 0.87228 0.81917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.89 37.16 0.37 -1.96 16 2 C 0.06 1.11 5.42 -3.82 -0.02 1.09 16 3 N -0.50 -10.62 3.47 -226.74 -0.79 -11.41 16 4 C 0.19 4.69 1.43 -4.98 -0.01 4.68 16 5 C -0.57 -15.92 8.55 -34.44 -0.29 -16.21 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.01 0.29 5.46 -17.82 -0.10 0.19 16 8 N -0.92 -27.64 13.65 55.43 0.76 -26.89 16 9 Si 1.07 25.49 29.90 -169.99 -5.08 20.41 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.08 1.52 2.74 -66.59 -0.18 1.34 16 14 H 0.07 1.20 6.37 -51.93 -0.33 0.87 16 15 C -0.17 -2.95 5.78 -25.07 -0.15 -3.10 16 16 C -0.12 -1.73 6.91 -24.74 -0.17 -1.90 16 17 C -0.16 -2.53 6.29 -25.02 -0.16 -2.68 16 18 C 0.10 1.74 3.80 -66.54 -0.25 1.49 16 19 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 20 N -0.82 -15.58 8.37 -3.67 -0.03 -15.61 16 21 H 0.04 0.64 6.76 -51.93 -0.35 0.29 16 22 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 1.71 7.48 -51.93 -0.39 1.33 16 25 H 0.01 0.24 7.85 -51.93 -0.41 -0.17 16 26 H -0.02 -0.60 6.86 -51.92 -0.36 -0.96 16 27 H 0.02 0.47 4.85 -51.93 -0.25 0.21 16 28 H 0.26 7.89 7.22 -40.82 -0.29 7.59 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.71 5.09 -51.93 -0.26 1.45 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.12 7.73 -51.92 -0.40 0.72 16 35 H 0.32 5.20 9.08 -39.29 -0.36 4.85 16 36 H 0.36 7.91 5.42 -39.29 -0.21 7.70 16 LS Contribution 272.50 15.07 4.11 4.11 Total: -1.00 -29.24 272.50 -7.78 -37.02 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.78 Total: 9.44 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -0.96 Total: -17.06 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.06 Total: -53.91 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.41 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.24 -7.78 -37.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249850701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.152 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds