Wall clock time and date at job start Mon Mar 30 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46904 * 109.47262 * 2 1 4 4 C 1.46895 * 111.00179 * 196.28646 * 3 2 1 5 5 C 1.50695 * 109.47354 * 78.90618 * 4 3 2 6 6 H 1.07997 * 119.99862 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00270 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99718 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99999 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46872 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.46983 * 299.99697 * 9 7 5 12 12 H 1.48491 * 109.47216 * 60.00001 * 9 7 5 13 13 C 1.46903 * 110.99728 * 72.33174 * 3 2 1 14 14 H 1.08999 * 110.01489 * 323.86148 * 13 3 2 15 15 C 1.54261 * 110.03111 * 85.25508 * 13 3 2 16 16 C 1.54895 * 104.19444 * 142.89456 * 15 13 3 17 17 C 1.54882 * 102.74664 * 322.05450 * 16 15 13 18 18 C 1.53876 * 110.02905 * 202.47150 * 13 3 2 19 19 H 1.09000 * 110.03312 * 121.43317 * 18 13 3 20 20 N 1.46896 * 110.03209 * 359.97438 * 18 13 3 21 21 H 1.08995 * 109.47513 * 293.78105 * 1 2 3 22 22 H 1.09003 * 109.47011 * 53.78224 * 1 2 3 23 23 H 1.09001 * 109.47248 * 173.77838 * 1 2 3 24 24 H 1.09002 * 109.47376 * 239.99873 * 2 1 3 25 25 H 1.08999 * 109.46967 * 119.99848 * 2 1 3 26 26 H 1.09012 * 109.47181 * 318.90772 * 4 3 2 27 27 H 1.08999 * 109.47590 * 198.91005 * 4 3 2 28 28 H 0.96997 * 120.00370 * 0.02562 * 8 7 5 29 29 H 1.09000 * 110.48421 * 261.56570 * 15 13 3 30 30 H 1.09002 * 110.49272 * 24.21220 * 15 13 3 31 31 H 1.08995 * 110.75580 * 80.36884 * 16 15 13 32 32 H 1.09003 * 110.75235 * 203.74368 * 16 15 13 33 33 H 1.09002 * 110.48706 * 156.62225 * 17 16 15 34 34 H 1.09008 * 110.48957 * 279.13244 * 17 16 15 35 35 H 1.00905 * 111.00061 * 171.35393 * 20 18 13 36 36 H 1.00901 * 111.00717 * 295.30576 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4362 1.4426 -0.3846 5 6 3.5556 1.3206 -1.8818 6 1 2.6679 1.2117 -2.4872 7 6 4.7981 1.3481 -2.4789 8 7 5.8791 1.4812 -1.7417 9 14 4.9460 1.1976 -4.3350 10 1 6.3781 1.2557 -4.7237 11 1 4.3654 -0.0965 -4.7745 12 1 4.2123 2.3146 -4.9822 13 6 1.8027 2.0200 1.3068 14 1 0.8628 1.6751 1.7377 15 6 2.9725 1.6885 2.2561 16 6 3.1820 2.9899 3.0696 17 6 2.9407 4.0961 2.0128 18 6 1.7812 3.5508 1.1518 19 1 0.8312 3.9489 1.5084 20 7 1.9847 3.9169 -0.2562 21 1 -0.3634 0.4144 0.9403 22 1 -0.3633 0.6072 -0.8291 23 1 -0.3634 -1.0216 -0.1114 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.9754 0.6230 0.0908 27 1 3.8619 2.3928 -0.0623 28 1 5.8023 1.5597 -0.7780 29 1 2.7053 0.8642 2.9174 30 1 3.8696 1.4463 1.6862 31 1 2.4538 3.0619 3.8774 32 1 4.1989 3.0427 3.4587 33 1 2.6503 5.0289 2.4963 34 1 3.8334 4.2444 1.4049 35 1 1.8340 4.9045 -0.3985 36 1 2.9027 3.6421 -0.5724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249850701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:45 Heat of formation + Delta-G solvation = -14.933273 kcal Electronic energy + Delta-G solvation = -15379.198657 eV Core-core repulsion = 13090.238176 eV Total energy + Delta-G solvation = -2288.960481 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.65377 -36.68736 -34.93534 -33.29521 -31.47657 -29.22138 -27.53194 -26.44462 -24.41210 -22.86159 -21.53850 -19.86160 -18.79526 -17.69761 -16.93541 -15.77721 -15.55347 -15.50600 -15.27512 -14.79737 -14.49671 -14.07631 -13.67574 -13.29093 -13.12804 -12.84744 -12.54784 -12.37787 -12.30236 -12.08169 -11.97690 -11.92642 -11.77933 -11.45858 -11.24755 -10.65087 -10.47022 -9.18166 -8.81505 -8.51990 -6.25516 1.55208 1.63113 1.82372 2.59813 3.19111 3.24485 3.68716 3.70222 3.89175 4.16101 4.21708 4.40478 4.43678 4.47584 4.53432 4.66559 4.69532 4.74061 4.85507 4.90514 4.97278 5.05024 5.07476 5.09440 5.21727 5.34651 5.36514 5.45801 5.99519 6.14806 6.42726 6.58189 6.63943 6.83519 6.91585 7.52186 8.80556 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028724 B = 0.011135 C = 0.009612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.562443 B = 2513.991311 C = 2912.313410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.053 3.947 3 N -0.504 5.504 4 C 0.212 3.788 5 C -0.577 4.577 6 H 0.046 0.954 7 C -0.038 4.038 8 N -0.943 5.943 9 Si 1.116 2.884 10 H -0.287 1.287 11 H -0.275 1.275 12 H -0.272 1.272 13 C 0.076 3.924 14 H 0.089 0.911 15 C -0.168 4.168 16 C -0.108 4.108 17 C -0.157 4.157 18 C 0.100 3.900 19 H 0.094 0.906 20 N -0.833 5.833 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.047 0.953 25 H 0.016 0.984 26 H -0.055 1.055 27 H 0.009 0.991 28 H 0.251 0.749 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.330 0.670 36 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.784 2.669 7.911 12.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.076 4.076 3 N -0.227 5.227 4 C 0.085 3.915 5 C -0.616 4.616 6 H 0.064 0.936 7 C -0.235 4.235 8 N -0.582 5.582 9 Si 0.938 3.062 10 H -0.213 1.213 11 H -0.200 1.200 12 H -0.197 1.197 13 C -0.033 4.033 14 H 0.107 0.893 15 C -0.207 4.207 16 C -0.146 4.146 17 C -0.197 4.197 18 C -0.013 4.013 19 H 0.112 0.888 20 N -0.364 5.364 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.065 0.935 25 H 0.034 0.966 26 H -0.038 1.038 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.143 0.857 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.609 2.388 6.124 10.832 hybrid contribution 0.670 0.012 2.257 2.355 sum -7.939 2.400 8.381 11.792 Atomic orbital electron populations 1.21647 0.93262 1.01665 1.01888 1.22014 0.97036 0.89793 0.98738 1.62037 1.18653 1.15608 1.26366 1.19427 0.84990 0.92291 0.94750 1.22265 0.94329 1.51881 0.93087 0.93581 1.27176 0.91994 0.93671 1.10642 1.70942 1.31088 1.49518 1.06633 0.82929 0.75764 0.77633 0.69852 1.21252 1.20043 1.19722 1.22610 0.97504 0.95068 0.88167 0.89288 1.23182 0.99510 0.99134 0.98904 1.22304 1.01808 0.93143 0.97353 1.23280 0.98516 0.99518 0.98381 1.22106 0.97610 0.93877 0.87691 0.88770 1.58706 1.38412 1.20715 1.18553 0.92186 0.93010 0.91251 0.93467 0.96591 1.03767 0.97309 0.94009 0.91418 0.93845 0.88983 0.92023 0.89557 0.94400 0.85735 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 9.89 71.98 0.71 -3.23 16 2 C 0.05 2.09 5.42 86.30 0.47 2.55 16 3 N -0.50 -21.64 3.47 -871.29 -3.03 -24.67 16 4 C 0.21 10.95 1.43 85.56 0.12 11.08 16 5 C -0.58 -32.99 8.55 25.60 0.22 -32.77 16 6 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 7 C -0.04 -2.22 5.46 84.66 0.46 -1.76 16 8 N -0.94 -58.33 13.65 21.45 0.29 -58.03 16 9 Si 1.12 51.61 29.90 68.60 2.05 53.66 16 10 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 C 0.08 2.67 2.74 45.64 0.12 2.80 16 14 H 0.09 2.78 6.37 -2.39 -0.02 2.76 16 15 C -0.17 -5.74 5.78 31.67 0.18 -5.55 16 16 C -0.11 -2.96 6.91 31.88 0.22 -2.74 16 17 C -0.16 -4.57 6.29 31.70 0.20 -4.37 16 18 C 0.10 3.20 3.80 45.68 0.17 3.37 16 19 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 20 N -0.83 -31.17 8.37 -165.53 -1.39 -32.56 16 21 H 0.06 1.64 6.76 -2.39 -0.02 1.62 16 22 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 2.13 7.48 -2.39 -0.02 2.11 16 25 H 0.02 0.61 7.85 -2.39 -0.02 0.59 16 26 H -0.06 -3.15 6.86 -2.38 -0.02 -3.17 16 27 H 0.01 0.49 4.85 -2.39 -0.01 0.48 16 28 H 0.25 15.73 7.22 -92.71 -0.67 15.06 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.04 1.84 5.09 -2.39 -0.01 1.82 16 31 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.04 1.30 7.73 -2.38 -0.02 1.28 16 35 H 0.33 10.51 9.08 -89.69 -0.81 9.70 16 36 H 0.34 15.25 5.42 -89.69 -0.49 14.77 16 Total: -1.00 -64.32 272.50 0.68 -63.64 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -0.13 Total: 28.57 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 2.89 Total: -30.61 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -4.12 Total: -115.26 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.05 Total: 53.66 kcal Total: -64.32 0.68 -63.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249850701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.706 kcal (2) G-P(sol) polarization free energy of solvation -64.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds