Wall clock time and date at job start Mon Mar 30 2020 02:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.47236 * 2 1 4 4 C 1.46901 * 111.00143 * 162.44842 * 3 2 1 5 5 H 1.08999 * 109.47436 * 179.69469 * 4 3 2 6 6 C 1.53002 * 109.46563 * 59.70029 * 4 3 2 7 7 C 1.50700 * 109.47259 * 299.70288 * 4 3 2 8 8 H 1.07999 * 120.00345 * 94.35660 * 7 4 3 9 9 C 1.37878 * 119.99658 * 274.35396 * 7 4 3 10 10 N 1.31516 * 120.00040 * 184.36133 * 9 7 4 11 11 Si 1.86806 * 120.00056 * 4.36938 * 9 7 4 12 12 H 1.48493 * 109.47093 * 92.10347 * 11 9 7 13 13 H 1.48501 * 109.47177 * 212.10529 * 11 9 7 14 14 H 1.48501 * 109.46855 * 332.10289 * 11 9 7 15 15 C 1.46894 * 111.00332 * 286.40761 * 3 2 1 16 16 H 1.08993 * 110.28915 * 310.92497 * 15 3 2 17 17 C 1.54262 * 110.32283 * 73.04819 * 15 3 2 18 18 C 1.54383 * 105.06140 * 118.89533 * 17 15 3 19 19 N 1.48563 * 104.59488 * 23.85324 * 18 17 15 20 20 C 1.48727 * 104.28609 * 320.57439 * 19 18 17 21 21 H 1.08997 * 109.46714 * 312.64880 * 1 2 3 22 22 H 1.08999 * 109.47287 * 72.65186 * 1 2 3 23 23 H 1.09001 * 109.46661 * 192.65491 * 1 2 3 24 24 H 1.09005 * 109.46782 * 240.00361 * 2 1 3 25 25 H 1.08997 * 109.47627 * 120.00744 * 2 1 3 26 26 H 1.09003 * 109.46945 * 174.92711 * 6 4 3 27 27 H 1.08998 * 109.47437 * 54.92591 * 6 4 3 28 28 H 1.09001 * 109.46814 * 294.91922 * 6 4 3 29 29 H 0.96999 * 120.00040 * 179.97438 * 10 9 7 30 30 H 1.08994 * 110.32570 * 237.79091 * 17 15 3 31 31 H 1.09000 * 110.32484 * 359.90086 * 17 15 3 32 32 H 1.09000 * 110.41191 * 142.62829 * 18 17 15 33 33 H 1.09002 * 110.41262 * 265.07567 * 18 17 15 34 34 H 1.00899 * 111.00211 * 200.95998 * 19 18 17 35 35 H 1.08996 * 110.38587 * 280.64199 * 20 19 18 36 36 H 1.09001 * 110.50597 * 158.14572 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4280 1.4454 0.4136 5 1 3.7667 2.4814 0.3996 6 6 4.2789 0.6177 -0.5517 7 6 3.5665 0.8903 1.8078 8 1 3.8263 -0.1479 1.9523 9 6 3.3615 1.7081 2.8988 10 7 3.5657 1.2473 4.1135 11 14 2.7935 3.4704 2.6516 12 1 1.3104 3.5242 2.7017 13 1 3.3565 4.3273 3.7259 14 1 3.2623 3.9608 1.3306 15 6 1.8300 2.0105 -1.3155 16 1 2.2075 1.3576 -2.1024 17 6 0.3379 2.3241 -1.5495 18 6 0.2722 3.8570 -1.7210 19 7 1.6354 4.2423 -2.1685 20 6 2.5427 3.3790 -1.3663 21 1 -0.3633 0.6962 0.7559 22 1 -0.3634 0.3064 -0.9809 23 1 -0.3633 -1.0027 0.2251 24 1 1.8933 -0.5138 -0.8901 25 1 1.8935 -0.5139 0.8899 26 1 5.3328 0.7350 -0.2992 27 1 4.1093 0.9616 -1.5721 28 1 4.0009 -0.4332 -0.4715 29 1 3.4218 1.8227 4.8811 30 1 -0.0166 1.8266 -2.4522 31 1 -0.2540 2.0123 -0.6889 32 1 -0.4657 4.1235 -2.4777 33 1 0.0343 4.3360 -0.7712 34 1 1.8125 5.2192 -1.9884 35 1 2.6612 3.7834 -0.3611 36 1 3.5120 3.2849 -1.8559 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250070832.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:23 Heat of formation + Delta-G solvation = -5.692513 kcal Electronic energy + Delta-G solvation = -15556.561311 eV Core-core repulsion = 13268.001539 eV Total energy + Delta-G solvation = -2288.559771 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.49511 -37.37919 -34.65377 -33.03878 -30.78209 -29.89577 -27.95360 -27.27436 -23.56818 -22.74206 -21.66101 -20.13562 -18.80899 -17.55879 -17.16283 -16.31227 -15.65201 -15.34656 -15.20492 -14.87628 -14.31515 -14.06785 -13.74243 -13.36057 -13.01505 -12.87865 -12.74454 -12.67488 -12.54029 -12.25508 -11.88122 -11.81919 -11.53965 -11.39391 -11.19635 -10.83313 -10.71099 -9.55427 -8.83914 -8.25565 -6.31559 1.35814 1.43278 1.49490 2.40931 2.92310 3.33614 3.64677 3.83535 3.94057 4.23581 4.36361 4.39349 4.49106 4.53594 4.69117 4.70629 4.76137 4.80613 4.86073 4.95808 4.99687 5.07198 5.12577 5.17102 5.26222 5.37563 5.46551 5.48901 5.67364 5.72421 6.17315 6.37358 6.58149 6.70018 6.88369 7.39230 8.89499 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026938 B = 0.014075 C = 0.012245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.164359 B = 1988.890728 C = 2286.078949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.063 3.937 3 N -0.538 5.538 4 C 0.166 3.834 5 H 0.054 0.946 6 C -0.157 4.157 7 C -0.495 4.495 8 H 0.029 0.971 9 C 0.026 3.974 10 N -0.949 5.949 11 Si 0.954 3.046 12 H -0.280 1.280 13 H -0.304 1.304 14 H -0.235 1.235 15 C 0.075 3.925 16 H 0.043 0.957 17 C -0.125 4.125 18 C 0.037 3.963 19 N -0.666 5.666 20 C 0.031 3.969 21 H 0.046 0.954 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.027 0.973 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.263 0.737 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.032 0.968 34 H 0.342 0.658 35 H 0.040 0.960 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.457 4.555 -12.548 14.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 N -0.263 5.263 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.216 4.216 7 C -0.533 4.533 8 H 0.048 0.952 9 C -0.173 4.173 10 N -0.589 5.589 11 Si 0.782 3.218 12 H -0.206 1.206 13 H -0.232 1.232 14 H -0.159 1.159 15 C -0.034 4.034 16 H 0.061 0.939 17 C -0.163 4.163 18 C -0.092 4.092 19 N -0.295 5.295 20 C -0.098 4.098 21 H 0.065 0.935 22 H 0.092 0.908 23 H 0.077 0.923 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.051 0.949 34 H 0.157 0.843 35 H 0.058 0.942 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.714 4.478 -12.691 15.040 hybrid contribution 0.482 0.331 1.060 1.211 sum -6.231 4.809 -11.631 14.044 Atomic orbital electron populations 1.22016 0.94622 1.01216 1.02040 1.21805 0.95948 0.89398 0.99396 1.62798 1.21026 1.17716 1.24780 1.19863 0.84890 0.96599 0.92702 0.92816 1.22225 1.00519 1.00091 0.98748 1.21063 1.45492 0.96467 0.90308 0.95224 1.25807 0.94011 1.02936 0.94515 1.70074 1.51001 1.38677 0.99167 0.85698 0.78528 0.79718 0.77862 1.20608 1.23185 1.15931 1.22387 0.96171 0.94414 0.90462 0.93910 1.22774 0.95640 0.95497 1.02435 1.22963 0.91716 0.95677 0.98883 1.63749 1.02998 1.08660 1.54062 1.23197 0.96880 0.93625 0.96131 0.93514 0.90801 0.92254 0.95441 0.93006 0.93342 0.92804 0.94224 0.92832 0.90157 0.89640 0.88398 0.94947 0.84259 0.94212 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 8.42 71.98 0.61 -3.81 16 2 C 0.06 2.39 4.60 86.31 0.40 2.78 16 3 N -0.54 -21.54 3.95 -845.07 -3.33 -24.88 16 4 C 0.17 7.43 1.32 44.17 0.06 7.49 16 5 H 0.05 2.45 3.83 -2.39 -0.01 2.44 16 6 C -0.16 -6.19 8.52 71.98 0.61 -5.57 16 7 C -0.49 -27.52 7.51 25.60 0.19 -27.33 16 8 H 0.03 1.84 7.97 -2.91 -0.02 1.82 16 9 C 0.03 1.48 5.47 84.65 0.46 1.94 16 10 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 11 Si 0.95 45.77 27.17 68.60 1.86 47.64 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 13 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 14 H -0.23 -10.17 4.19 99.48 0.42 -9.76 16 15 C 0.07 2.48 2.09 45.81 0.10 2.58 16 16 H 0.04 1.42 6.91 -2.39 -0.02 1.40 16 17 C -0.13 -3.50 4.93 31.49 0.16 -3.34 16 18 C 0.04 0.94 7.47 86.45 0.65 1.59 16 19 N -0.67 -17.99 7.62 -500.43 -3.82 -21.80 16 20 C 0.03 1.01 5.76 86.42 0.50 1.51 16 21 H 0.05 1.59 7.65 -2.39 -0.02 1.57 16 22 H 0.07 1.95 5.70 -2.39 -0.01 1.93 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.03 0.98 7.18 -2.38 -0.02 0.96 16 25 H 0.05 2.36 6.55 -2.39 -0.02 2.35 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.05 1.84 6.61 -2.39 -0.02 1.83 16 28 H 0.04 1.58 7.09 -2.39 -0.02 1.56 16 29 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 30 H 0.08 1.94 8.02 -2.39 -0.02 1.92 16 31 H 0.09 2.52 5.01 -2.39 -0.01 2.51 16 32 H 0.10 2.02 8.14 -2.39 -0.02 2.01 16 33 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.34 8.02 8.92 -89.69 -0.80 7.22 16 35 H 0.04 1.48 4.81 -2.39 -0.01 1.47 16 36 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -62.82 262.44 -1.29 -64.11 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.03 Total: 16.00 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 3.72 Total: -22.17 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -6.85 Total: -105.59 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.86 Total: 47.64 kcal Total: -62.82 -1.29 -64.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250070832.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.419 kcal (2) G-P(sol) polarization free energy of solvation -62.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds