Wall clock time and date at job start Mon Mar 30 2020 02:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.47009 * 2 1 4 4 C 1.46958 * 110.99732 * 302.24354 * 3 2 1 5 5 H 1.08998 * 109.48790 * 63.22371 * 4 3 2 6 6 C 1.50694 * 109.48976 * 303.17465 * 4 3 2 7 7 H 1.08003 * 119.99780 * 0.02562 * 6 4 3 8 8 C 1.37877 * 120.00322 * 179.97438 * 6 4 3 9 9 N 1.31513 * 120.00214 * 180.02562 * 8 6 4 10 10 Si 1.86801 * 119.99607 * 0.02562 * 8 6 4 11 11 H 1.48501 * 109.47230 * 89.99748 * 10 8 6 12 12 H 1.48503 * 109.47068 * 209.99774 * 10 8 6 13 13 H 1.48501 * 109.47192 * 329.99174 * 10 8 6 14 14 C 1.53052 * 109.36105 * 183.18529 * 4 3 2 15 15 N 1.46949 * 109.36740 * 301.59952 * 14 4 3 16 16 C 1.46906 * 111.00012 * 183.18745 * 15 14 4 17 17 C 1.46953 * 110.88368 * 59.31979 * 15 14 4 18 18 C 1.46961 * 110.99833 * 66.04040 * 3 2 1 19 19 H 1.08995 * 109.49196 * 296.77772 * 18 3 2 20 20 C 1.52998 * 109.50431 * 56.83597 * 18 3 2 21 21 H 1.09002 * 109.47056 * 60.00733 * 1 2 3 22 22 H 1.09002 * 109.47352 * 180.02562 * 1 2 3 23 23 H 1.08991 * 109.47935 * 300.00224 * 1 2 3 24 24 H 1.09000 * 109.47769 * 240.00057 * 2 1 3 25 25 H 1.09002 * 109.47056 * 119.99267 * 2 1 3 26 26 H 0.97003 * 119.99629 * 180.02562 * 9 8 6 27 27 H 1.09004 * 109.48734 * 181.63032 * 14 4 3 28 28 H 1.09007 * 109.48868 * 61.56667 * 14 4 3 29 29 H 1.08992 * 109.47459 * 296.19857 * 16 15 14 30 30 H 1.09004 * 109.47040 * 56.20008 * 16 15 14 31 31 H 1.09000 * 109.47033 * 176.19960 * 16 15 14 32 32 H 1.09008 * 109.49002 * 60.64508 * 17 15 14 33 33 H 1.09000 * 109.49484 * 180.71073 * 17 15 14 34 34 H 1.09003 * 109.46830 * 179.89957 * 20 18 3 35 35 H 1.08996 * 109.47267 * 299.89856 * 20 18 3 36 36 H 1.08996 * 109.47161 * 59.90177 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5050 2.1255 -1.1604 5 1 0.4187 2.1894 -1.0984 6 6 1.8951 1.4089 -2.4274 7 1 2.4677 0.4946 -2.3762 8 6 1.5202 1.9199 -3.6519 9 7 1.8603 1.2943 -4.7575 10 14 0.5293 3.5010 -3.7403 11 1 1.4535 4.6608 -3.8178 12 1 -0.3360 3.4760 -4.9469 13 1 -0.3175 3.6230 -2.5264 14 6 2.0998 3.5357 -1.1669 15 7 1.7501 4.2179 0.0868 16 6 2.2398 5.6029 0.0868 17 6 2.2646 3.4775 1.2472 18 6 1.6698 2.0673 1.2538 19 1 0.5854 2.1305 1.3432 20 6 2.2347 1.2805 2.4382 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3635 0.5138 0.8898 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 1.5968 1.6541 -5.6190 27 1 1.6971 4.0963 -2.0106 28 1 3.1844 3.4725 -1.2563 29 1 3.3290 5.6033 0.0466 30 1 1.8440 6.1282 -0.7825 31 1 1.9096 6.1050 0.9962 32 1 3.3511 3.4136 1.1853 33 1 1.9822 3.9956 2.1636 34 1 1.9764 1.7880 3.3677 35 1 1.8109 0.2763 2.4426 36 1 3.3190 1.2169 2.3482 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250227543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:34 Heat of formation + Delta-G solvation = 21.911362 kcal Electronic energy + Delta-G solvation = -15589.105985 eV Core-core repulsion = 13301.743207 eV Total energy + Delta-G solvation = -2287.362778 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.10133 -35.46651 -33.32482 -31.51627 -30.10145 -27.00994 -26.60979 -25.24981 -23.00970 -21.04048 -20.86314 -18.30854 -16.74338 -15.64187 -15.22774 -14.79181 -14.21992 -14.00889 -13.64412 -13.10843 -12.80176 -12.41726 -12.23922 -12.08431 -11.86071 -11.47418 -11.30484 -11.26587 -10.96745 -10.68110 -10.47673 -10.30487 -10.11635 -9.68187 -9.38040 -9.04163 -8.56551 -7.81215 -7.24227 -6.08791 -4.07810 3.24889 3.37597 3.43637 4.37681 4.49933 4.76552 5.21831 5.32508 5.49802 5.66127 5.70329 5.80751 5.86788 5.91666 6.01873 6.02832 6.05565 6.12205 6.16402 6.26954 6.38867 6.45022 6.51915 6.56407 6.66595 6.94069 7.00393 7.25519 7.41789 7.58048 7.72420 7.98800 8.15863 8.66713 8.98845 9.53067 11.03542 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026565 B = 0.015455 C = 0.010974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.773964 B = 1811.261108 C = 2550.789209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.060 3.940 3 N -0.522 5.522 4 C 0.191 3.809 5 H 0.013 0.987 6 C -0.504 4.504 7 H 0.084 0.916 8 C 0.072 3.928 9 N -0.897 5.897 10 Si 0.874 3.126 11 H -0.279 1.279 12 H -0.295 1.295 13 H -0.259 1.259 14 C 0.054 3.946 15 N -0.553 5.553 16 C 0.026 3.974 17 C 0.068 3.932 18 C 0.075 3.925 19 H 0.042 0.958 20 C -0.142 4.142 21 H 0.068 0.932 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.086 0.914 25 H 0.057 0.943 26 H 0.264 0.736 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.022 0.978 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 3.297 11.427 11.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.068 4.068 3 N -0.246 5.246 4 C 0.083 3.917 5 H 0.030 0.970 6 C -0.542 4.542 7 H 0.102 0.898 8 C -0.130 4.130 9 N -0.535 5.535 10 Si 0.704 3.296 11 H -0.207 1.207 12 H -0.223 1.223 13 H -0.184 1.184 14 C -0.073 4.073 15 N -0.277 5.277 16 C -0.123 4.123 17 C -0.060 4.060 18 C -0.034 4.034 19 H 0.060 0.940 20 C -0.200 4.200 21 H 0.087 0.913 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.811 3.310 11.222 11.728 hybrid contribution -0.508 1.046 -0.292 1.199 sum -1.319 4.356 10.930 11.839 Atomic orbital electron populations 1.22349 0.99257 1.00943 1.01848 1.22040 0.92326 0.90690 1.01774 1.62303 1.59192 1.01932 1.01172 1.19724 0.93565 0.88818 0.89609 0.96956 1.20966 1.35128 1.10439 0.87703 0.89779 1.24912 0.95487 0.96883 0.95691 1.69873 1.46329 1.39641 0.97633 0.87045 0.80828 0.84174 0.77549 1.20662 1.22278 1.18392 1.22796 0.99219 0.96264 0.88989 1.62261 1.59567 1.01934 1.03977 1.22309 0.97545 0.90664 1.01760 1.22097 0.97402 0.93541 0.92997 1.21610 0.97658 0.92831 0.91320 0.94007 1.21846 1.01690 0.99993 0.96514 0.91271 0.93409 0.93993 0.89565 0.92447 0.92589 0.92125 0.94135 0.95988 0.92007 0.92097 0.94521 0.91617 0.93078 0.92307 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.39 9.20 37.16 0.34 -3.05 16 2 C 0.06 1.15 5.40 -3.82 -0.02 1.13 16 3 N -0.52 -10.96 4.54 -219.95 -1.00 -11.96 16 4 C 0.19 4.59 0.98 -68.81 -0.07 4.53 16 5 H 0.01 0.33 5.50 -51.93 -0.29 0.05 16 6 C -0.50 -13.95 8.52 -34.44 -0.29 -14.24 16 7 H 0.08 2.52 6.70 -52.48 -0.35 2.17 16 8 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 9 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 10 Si 0.87 21.94 24.36 -169.99 -4.14 17.79 16 11 H -0.28 -6.85 6.88 56.52 0.39 -6.46 16 12 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 13 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 14 C 0.05 1.25 4.37 -3.77 -0.02 1.24 16 15 N -0.55 -10.87 4.97 -242.75 -1.21 -12.08 16 16 C 0.03 0.42 9.60 60.07 0.58 0.99 16 17 C 0.07 1.18 4.90 -3.77 -0.02 1.16 16 18 C 0.08 1.34 2.21 -67.65 -0.15 1.19 16 19 H 0.04 0.79 6.63 -51.93 -0.34 0.44 16 20 C -0.14 -2.03 8.87 37.16 0.33 -1.70 16 21 H 0.07 1.46 6.43 -51.93 -0.33 1.13 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.04 0.71 6.62 -51.93 -0.34 0.37 16 24 H 0.09 1.86 6.36 -51.93 -0.33 1.53 16 25 H 0.06 0.96 5.92 -51.93 -0.31 0.65 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.06 1.46 3.32 -51.93 -0.17 1.29 16 28 H 0.04 0.97 8.14 -51.92 -0.42 0.54 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 1.00 8.13 -51.93 -0.42 0.57 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.81 6.23 -51.93 -0.32 0.48 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 263.16 15.07 3.97 3.97 Total: -1.00 -29.61 263.16 -6.80 -36.41 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.78 Total: -1.04 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 0.58 Total: -6.77 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -1.43 Total: -50.35 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.79 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.61 -6.80 -36.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250227543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.319 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds