Wall clock time and date at job start Mon Mar 30 2020 02:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.47009 * 2 1 4 4 C 1.46958 * 110.99732 * 302.24354 * 3 2 1 5 5 H 1.08998 * 109.48790 * 63.22371 * 4 3 2 6 6 C 1.50694 * 109.48976 * 303.17465 * 4 3 2 7 7 H 1.08003 * 119.99780 * 0.02562 * 6 4 3 8 8 C 1.37877 * 120.00322 * 179.97438 * 6 4 3 9 9 N 1.31513 * 120.00214 * 180.02562 * 8 6 4 10 10 Si 1.86801 * 119.99607 * 0.02562 * 8 6 4 11 11 H 1.48501 * 109.47230 * 89.99748 * 10 8 6 12 12 H 1.48503 * 109.47068 * 209.99774 * 10 8 6 13 13 H 1.48501 * 109.47192 * 329.99174 * 10 8 6 14 14 C 1.53052 * 109.36105 * 183.18529 * 4 3 2 15 15 N 1.46949 * 109.36740 * 301.59952 * 14 4 3 16 16 C 1.46906 * 111.00012 * 183.18745 * 15 14 4 17 17 C 1.46953 * 110.88368 * 59.31979 * 15 14 4 18 18 C 1.46961 * 110.99833 * 66.04040 * 3 2 1 19 19 H 1.08995 * 109.49196 * 296.77772 * 18 3 2 20 20 C 1.52998 * 109.50431 * 56.83597 * 18 3 2 21 21 H 1.09002 * 109.47056 * 60.00733 * 1 2 3 22 22 H 1.09002 * 109.47352 * 180.02562 * 1 2 3 23 23 H 1.08991 * 109.47935 * 300.00224 * 1 2 3 24 24 H 1.09000 * 109.47769 * 240.00057 * 2 1 3 25 25 H 1.09002 * 109.47056 * 119.99267 * 2 1 3 26 26 H 0.97003 * 119.99629 * 180.02562 * 9 8 6 27 27 H 1.09004 * 109.48734 * 181.63032 * 14 4 3 28 28 H 1.09007 * 109.48868 * 61.56667 * 14 4 3 29 29 H 1.08992 * 109.47459 * 296.19857 * 16 15 14 30 30 H 1.09004 * 109.47040 * 56.20008 * 16 15 14 31 31 H 1.09000 * 109.47033 * 176.19960 * 16 15 14 32 32 H 1.09008 * 109.49002 * 60.64508 * 17 15 14 33 33 H 1.09000 * 109.49484 * 180.71073 * 17 15 14 34 34 H 1.09003 * 109.46830 * 179.89957 * 20 18 3 35 35 H 1.08996 * 109.47267 * 299.89856 * 20 18 3 36 36 H 1.08996 * 109.47161 * 59.90177 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5050 2.1255 -1.1604 5 1 0.4187 2.1894 -1.0984 6 6 1.8951 1.4089 -2.4274 7 1 2.4677 0.4946 -2.3762 8 6 1.5202 1.9199 -3.6519 9 7 1.8603 1.2943 -4.7575 10 14 0.5293 3.5010 -3.7403 11 1 1.4535 4.6608 -3.8178 12 1 -0.3360 3.4760 -4.9469 13 1 -0.3175 3.6230 -2.5264 14 6 2.0998 3.5357 -1.1669 15 7 1.7501 4.2179 0.0868 16 6 2.2398 5.6029 0.0868 17 6 2.2646 3.4775 1.2472 18 6 1.6698 2.0673 1.2538 19 1 0.5854 2.1305 1.3432 20 6 2.2347 1.2805 2.4382 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3635 0.5138 0.8898 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 1.5968 1.6541 -5.6190 27 1 1.6971 4.0963 -2.0106 28 1 3.1844 3.4725 -1.2563 29 1 3.3290 5.6033 0.0466 30 1 1.8440 6.1282 -0.7825 31 1 1.9096 6.1050 0.9962 32 1 3.3511 3.4136 1.1853 33 1 1.9822 3.9956 2.1636 34 1 1.9764 1.7880 3.3677 35 1 1.8109 0.2763 2.4426 36 1 3.3190 1.2169 2.3482 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250227543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:34 Heat of formation + Delta-G solvation = -1.260972 kcal Electronic energy + Delta-G solvation = -15590.110812 eV Core-core repulsion = 13301.743207 eV Total energy + Delta-G solvation = -2288.367605 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.68405 -36.98002 -35.25892 -33.24838 -31.75710 -28.58920 -27.91591 -27.12057 -24.55213 -22.77567 -22.40614 -19.90503 -18.82621 -17.31931 -16.84442 -16.34511 -15.95359 -15.64724 -15.22794 -14.73254 -14.58715 -14.08413 -13.69688 -13.43111 -13.22315 -13.05175 -12.81200 -12.75473 -12.55725 -12.27719 -12.23731 -12.10216 -11.72396 -11.46216 -11.05969 -11.01308 -10.70924 -9.33016 -8.90498 -8.31283 -6.33635 1.23387 1.31567 1.42600 2.27255 2.94635 3.11617 3.23276 3.96066 4.12426 4.19490 4.37338 4.43219 4.46134 4.51723 4.57508 4.61302 4.65370 4.69180 4.81988 4.84289 4.91875 4.95011 5.09514 5.21093 5.23701 5.33125 5.37417 5.47860 5.61273 5.99005 6.08463 6.13868 6.47458 6.72941 6.76574 7.31246 8.84662 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026565 B = 0.015455 C = 0.010974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.773964 B = 1811.261108 C = 2550.789209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.060 3.940 3 N -0.536 5.536 4 C 0.199 3.801 5 H -0.003 1.003 6 C -0.501 4.501 7 H 0.047 0.953 8 C 0.020 3.980 9 N -0.942 5.942 10 Si 0.935 3.065 11 H -0.268 1.268 12 H -0.294 1.294 13 H -0.254 1.254 14 C 0.063 3.937 15 N -0.564 5.564 16 C 0.024 3.976 17 C 0.067 3.933 18 C 0.071 3.929 19 H 0.036 0.964 20 C -0.134 4.134 21 H 0.032 0.968 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.090 0.910 26 H 0.266 0.734 27 H 0.048 0.952 28 H 0.022 0.978 29 H 0.027 0.973 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.033 0.967 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.351 4.700 14.163 14.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.068 4.068 3 N -0.261 5.261 4 C 0.090 3.910 5 H 0.015 0.985 6 C -0.540 4.540 7 H 0.065 0.935 8 C -0.178 4.178 9 N -0.583 5.583 10 Si 0.763 3.237 11 H -0.194 1.194 12 H -0.221 1.221 13 H -0.178 1.178 14 C -0.065 4.065 15 N -0.288 5.288 16 C -0.124 4.124 17 C -0.061 4.061 18 C -0.038 4.038 19 H 0.054 0.946 20 C -0.192 4.192 21 H 0.051 0.949 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.051 0.949 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.347 4.719 13.991 14.826 hybrid contribution -0.293 0.535 -1.065 1.227 sum -1.640 5.254 12.925 14.048 Atomic orbital electron populations 1.22236 0.98305 1.02069 1.00835 1.22028 0.93103 0.90053 1.01629 1.62253 1.59492 1.02534 1.01776 1.19423 0.92538 0.89705 0.89318 0.98533 1.21167 1.33704 1.09341 0.89764 0.93527 1.25643 0.96709 1.00091 0.95330 1.70007 1.48329 1.41625 0.98292 0.86055 0.79538 0.80657 0.77486 1.19413 1.22141 1.17844 1.22462 0.97687 0.95630 0.90768 1.62238 1.60206 1.03449 1.02948 1.22420 0.97915 0.88689 1.03373 1.22249 0.97103 0.93388 0.93385 1.21812 0.97648 0.93614 0.90733 0.94591 1.21794 1.01337 1.00049 0.95976 0.94862 0.91269 0.92216 0.93101 0.89157 0.92475 0.93408 0.95921 0.95485 0.92304 0.88823 0.94910 0.87984 0.90011 0.91767 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.28 9.20 71.98 0.66 -5.62 16 2 C 0.06 2.28 5.40 86.30 0.47 2.75 16 3 N -0.54 -22.22 4.54 -849.78 -3.86 -26.08 16 4 C 0.20 9.65 0.98 44.17 0.04 9.69 16 5 H 0.00 -0.14 5.50 -2.39 -0.01 -0.15 16 6 C -0.50 -28.84 8.52 25.60 0.22 -28.62 16 7 H 0.05 2.97 6.70 -2.91 -0.02 2.95 16 8 C 0.02 1.19 5.45 84.65 0.46 1.65 16 9 N -0.94 -59.02 13.96 21.45 0.30 -58.72 16 10 Si 0.94 46.15 24.36 68.60 1.67 47.82 16 11 H -0.27 -12.61 6.88 99.48 0.68 -11.92 16 12 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 13 H -0.25 -12.21 6.53 99.48 0.65 -11.56 16 14 C 0.06 2.84 4.37 86.31 0.38 3.22 16 15 N -0.56 -20.75 4.97 -921.92 -4.58 -25.33 16 16 C 0.02 0.69 9.60 127.69 1.23 1.92 16 17 C 0.07 2.08 4.90 86.31 0.42 2.50 16 18 C 0.07 2.32 2.21 44.92 0.10 2.42 16 19 H 0.04 1.24 6.63 -2.39 -0.02 1.23 16 20 C -0.13 -3.27 8.87 71.98 0.64 -2.63 16 21 H 0.03 1.41 6.43 -2.39 -0.02 1.39 16 22 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.06 1.90 6.62 -2.39 -0.02 1.89 16 24 H 0.05 2.29 6.36 -2.39 -0.02 2.27 16 25 H 0.09 2.84 5.92 -2.39 -0.01 2.83 16 26 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 27 H 0.05 2.27 3.32 -2.38 -0.01 2.26 16 28 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 1.74 8.13 -2.38 -0.02 1.72 16 31 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.50 6.23 -2.39 -0.01 1.48 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -66.00 263.16 -0.89 -66.89 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.96 Total: 8.13 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 4.62 Total: -12.72 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -8.14 Total: -110.13 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.67 Total: 47.82 kcal Total: -66.00 -0.89 -66.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250227543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.628 kcal (2) G-P(sol) polarization free energy of solvation -66.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds