Wall clock time and date at job start Mon Mar 30 2020 02:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46894 * 109.47262 * 2 1 4 4 C 1.46962 * 111.00091 * 66.04671 * 3 2 1 5 5 C 1.53051 * 109.36447 * 176.81368 * 4 3 2 6 6 H 1.09002 * 109.48789 * 178.36675 * 5 4 3 7 7 C 1.52998 * 109.48596 * 298.41101 * 5 4 3 8 8 N 1.46958 * 109.36517 * 58.39895 * 5 4 3 9 9 C 1.46903 * 110.99908 * 176.81328 * 8 5 4 10 10 C 1.46952 * 110.87865 * 300.67868 * 8 5 4 11 11 C 1.46955 * 111.00051 * 302.24897 * 3 2 1 12 12 H 1.08995 * 109.49404 * 63.19854 * 11 3 2 13 13 C 1.50706 * 109.48650 * 303.15235 * 11 3 2 14 14 H 1.08000 * 119.99708 * 0.02562 * 13 11 3 15 15 C 1.37877 * 120.00234 * 180.02562 * 13 11 3 16 16 N 1.31516 * 119.99497 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00031 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47060 * 90.00101 * 17 15 13 19 19 H 1.48498 * 109.46899 * 209.99929 * 17 15 13 20 20 H 1.48494 * 109.46911 * 329.99954 * 17 15 13 21 21 H 1.09005 * 109.46935 * 300.00306 * 1 2 3 22 22 H 1.08998 * 109.47004 * 59.99753 * 1 2 3 23 23 H 1.09001 * 109.47474 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46982 * 239.99694 * 2 1 3 25 25 H 1.09002 * 109.46796 * 119.99779 * 2 1 3 26 26 H 1.08999 * 109.49100 * 56.84183 * 4 3 2 27 27 H 1.09008 * 109.50438 * 296.78808 * 4 3 2 28 28 H 1.09001 * 109.47273 * 59.95657 * 7 5 4 29 29 H 1.09003 * 109.47301 * 179.97438 * 7 5 4 30 30 H 1.09003 * 109.47201 * 299.95179 * 7 5 4 31 31 H 1.09003 * 109.47138 * 60.00053 * 9 8 5 32 32 H 1.09001 * 109.47105 * 179.97438 * 9 8 5 33 33 H 1.08997 * 109.46931 * 299.99914 * 9 8 5 34 34 H 1.09001 * 109.49209 * 299.35168 * 10 8 5 35 35 H 1.08999 * 109.48772 * 179.29068 * 10 8 5 36 36 H 0.97007 * 119.99636 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6701 2.0672 1.2538 5 6 2.2650 3.4773 1.2472 6 1 1.9826 3.9954 2.1637 7 6 3.7899 3.3876 1.1607 8 7 1.7504 4.2178 0.0868 9 6 2.2401 5.6028 0.0868 10 6 2.1000 3.5356 -1.1669 11 6 1.5051 2.1255 -1.1603 12 1 0.4187 2.1891 -1.0985 13 6 1.8956 1.4092 -2.4274 14 1 2.4683 0.4950 -2.3763 15 6 1.5216 1.9208 -3.6519 16 7 0.8246 3.0343 -3.7141 17 14 2.0051 1.0325 -5.2224 18 1 0.9460 0.0569 -5.5854 19 1 2.1659 2.0198 -6.3200 20 1 3.2876 0.3148 -5.0104 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.0728 1.5065 2.0974 27 1 0.5856 2.1304 1.3436 28 1 4.0720 2.8694 0.2442 29 1 4.2133 4.3920 1.1555 30 1 4.1709 2.8374 2.0212 31 1 3.3294 5.6031 0.0465 32 1 1.8446 6.1280 -0.7826 33 1 1.9100 6.1049 0.9962 34 1 3.1845 3.4724 -1.2563 35 1 1.6974 4.0962 -2.0105 36 1 0.5612 3.3942 -4.5756 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250231039.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:41 Heat of formation + Delta-G solvation = 14.847725 kcal Electronic energy + Delta-G solvation = -15591.711049 eV Core-core repulsion = 13304.041969 eV Total energy + Delta-G solvation = -2287.669080 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.93704 -35.39683 -33.02725 -30.75658 -29.60352 -27.34611 -25.95570 -24.72259 -23.18162 -21.85945 -20.27594 -17.54687 -16.18735 -15.46284 -14.98105 -14.52676 -14.01007 -13.64729 -13.44841 -12.94164 -12.69482 -12.55654 -12.11034 -11.61963 -11.38804 -11.14739 -11.02611 -10.92041 -10.81394 -10.66027 -10.38117 -10.14406 -10.00407 -9.75056 -9.46172 -8.83903 -8.45026 -7.41256 -7.00538 -6.01813 -4.06228 3.30093 3.37158 3.40885 4.40418 4.84048 5.09553 5.32340 5.54526 5.74946 5.81048 5.89740 5.99991 6.04198 6.08489 6.18374 6.24431 6.30909 6.41012 6.45578 6.48586 6.62462 6.71585 6.78238 7.00275 7.04377 7.16719 7.44881 7.64622 7.79953 7.99014 8.05754 8.21359 8.37125 8.66639 9.02188 9.58949 11.04732 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028347 B = 0.013032 C = 0.010242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.520540 B = 2148.018713 C = 2733.053600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.064 3.936 3 N -0.534 5.534 4 C 0.062 3.938 5 C 0.084 3.916 6 H 0.065 0.935 7 C -0.175 4.175 8 N -0.544 5.544 9 C 0.028 3.972 10 C 0.064 3.936 11 C 0.221 3.779 12 H 0.014 0.986 13 C -0.504 4.504 14 H 0.064 0.936 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.041 0.959 22 H 0.072 0.928 23 H 0.043 0.957 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.031 0.969 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.019 0.981 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.020 0.980 35 H 0.105 0.895 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 0.071 7.395 7.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.064 4.064 3 N -0.259 5.259 4 C -0.067 4.067 5 C -0.025 4.025 6 H 0.083 0.917 7 C -0.233 4.233 8 N -0.268 5.268 9 C -0.121 4.121 10 C -0.063 4.063 11 C 0.114 3.886 12 H 0.032 0.968 13 C -0.543 4.543 14 H 0.082 0.918 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.722 3.278 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.060 0.940 22 H 0.091 0.909 23 H 0.062 0.938 24 H 0.098 0.902 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.123 0.877 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.871 0.209 7.243 7.484 hybrid contribution 0.213 -0.331 -0.861 0.946 sum 2.084 -0.121 6.383 6.715 Atomic orbital electron populations 1.22359 0.99241 1.00568 1.02208 1.21912 0.92347 0.91276 1.00879 1.62435 1.59256 1.01783 1.02398 1.22040 0.97693 0.93472 0.93530 1.21649 0.92816 0.94171 0.93885 0.91668 1.22309 0.97473 1.00378 1.03176 1.62536 1.58517 1.01511 1.04192 1.22273 0.97331 0.91220 1.01256 1.22517 0.97316 0.96971 0.89539 1.19267 0.93733 0.88858 0.86701 0.96835 1.21140 1.34306 1.09071 0.89789 0.91837 1.24949 0.95050 0.95071 0.99045 1.69890 1.37953 1.20043 1.25027 0.86552 0.78907 0.79366 0.82934 1.20769 1.21312 1.19895 0.93992 0.90919 0.93837 0.90185 0.93480 0.92319 0.95074 0.90398 0.94032 0.93392 0.96243 0.91922 0.92944 0.96215 0.87724 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.50 9.20 37.16 0.34 -3.15 16 2 C 0.06 1.26 5.70 -3.83 -0.02 1.24 16 3 N -0.53 -11.54 4.04 -227.88 -0.92 -12.46 16 4 C 0.06 1.18 4.70 -3.76 -0.02 1.16 16 5 C 0.08 1.56 2.97 -67.66 -0.20 1.35 16 6 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 7 C -0.17 -3.05 8.37 37.16 0.31 -2.74 16 8 N -0.54 -11.37 4.92 -234.73 -1.15 -12.53 16 9 C 0.03 0.50 9.28 60.07 0.56 1.05 16 10 C 0.06 1.54 4.28 -3.77 -0.02 1.53 16 11 C 0.22 5.51 1.39 -68.80 -0.10 5.42 16 12 H 0.01 0.39 6.45 -51.93 -0.33 0.06 16 13 C -0.50 -13.50 7.94 -34.44 -0.27 -13.77 16 14 H 0.06 1.71 6.45 -52.49 -0.34 1.37 16 15 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -24.98 11.34 55.43 0.63 -24.35 16 17 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H 0.04 0.75 6.62 -51.93 -0.34 0.41 16 22 H 0.07 1.61 6.43 -51.93 -0.33 1.27 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.08 1.68 6.36 -51.93 -0.33 1.35 16 25 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 26 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 27 H 0.03 0.62 6.63 -51.92 -0.34 0.28 16 28 H 0.08 1.58 5.94 -51.93 -0.31 1.27 16 29 H 0.04 0.67 6.48 -51.93 -0.34 0.34 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.02 0.33 6.39 -51.93 -0.33 0.00 16 32 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.02 0.49 6.35 -51.93 -0.33 0.16 16 35 H 0.10 2.83 6.11 -51.93 -0.32 2.51 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 LS Contribution 265.73 15.07 4.00 4.00 Total: -1.00 -27.50 265.73 -7.71 -35.21 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.74 Total: 0.45 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 0.49 Total: -6.37 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -1.45 Total: -49.33 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.50 -7.71 -35.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250231039.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.055 kcal (2) G-P(sol) polarization free energy of solvation -27.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds