Wall clock time and date at job start Mon Mar 30 2020 02:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46895 * 109.46818 * 2 1 4 4 C 1.46961 * 111.00606 * 313.80458 * 3 2 1 5 5 C 1.53048 * 109.36779 * 176.81311 * 4 3 2 6 6 H 1.09003 * 109.50053 * 298.41920 * 5 4 3 7 7 C 1.52997 * 109.48842 * 178.36743 * 5 4 3 8 8 N 1.46951 * 109.36535 * 58.39729 * 5 4 3 9 9 C 1.46898 * 110.99950 * 176.81544 * 8 5 4 10 10 C 1.46959 * 110.88232 * 300.67900 * 8 5 4 11 11 C 1.46956 * 111.00119 * 190.00187 * 3 2 1 12 12 H 1.08994 * 109.48997 * 63.22513 * 11 3 2 13 13 C 1.50703 * 109.48706 * 303.15988 * 11 3 2 14 14 H 1.07998 * 120.00280 * 0.10320 * 13 11 3 15 15 C 1.37880 * 119.99803 * 180.10895 * 13 11 3 16 16 N 1.31508 * 120.00336 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99615 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46745 * 90.00052 * 17 15 13 19 19 H 1.48498 * 109.47037 * 209.99873 * 17 15 13 20 20 H 1.48497 * 109.47252 * 330.00074 * 17 15 13 21 21 H 1.09005 * 109.47007 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47138 * 299.99741 * 1 2 3 23 23 H 1.08996 * 109.47137 * 60.00029 * 1 2 3 24 24 H 1.09005 * 109.46605 * 240.00576 * 2 1 3 25 25 H 1.08991 * 109.47340 * 120.00406 * 2 1 3 26 26 H 1.08994 * 109.48778 * 56.83733 * 4 3 2 27 27 H 1.09003 * 109.48025 * 296.77677 * 4 3 2 28 28 H 1.09002 * 109.47153 * 300.10452 * 7 5 4 29 29 H 1.09001 * 109.46832 * 180.10643 * 7 5 4 30 30 H 1.09004 * 109.47261 * 60.10624 * 7 5 4 31 31 H 1.08998 * 109.47424 * 60.00073 * 9 8 5 32 32 H 1.09004 * 109.47239 * 180.02562 * 9 8 5 33 33 H 1.09006 * 109.47239 * 299.99892 * 9 8 5 34 34 H 1.09005 * 109.48943 * 179.28806 * 10 8 5 35 35 H 1.09003 * 109.49078 * 299.33356 * 10 8 5 36 36 H 0.97000 * 120.00410 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2998 2.1982 -0.9901 5 6 1.7824 3.6480 -0.9036 6 1 1.5639 4.0457 0.0875 7 6 1.0643 4.4890 -1.9608 8 7 3.2318 3.6942 -1.1418 9 6 3.7214 5.0791 -1.1417 10 6 3.9516 2.8811 -0.1516 11 6 3.4690 1.4312 -0.2383 12 1 3.6875 1.0339 -1.2294 13 6 4.1764 0.6028 0.8031 14 1 3.6066 0.0914 1.5648 15 6 5.5510 0.4978 0.7834 16 7 6.2449 1.1202 -0.1443 17 14 6.4279 -0.5285 2.0747 18 1 6.5625 -1.9254 1.5891 19 1 7.7764 0.0400 2.3269 20 1 5.6419 -0.5159 3.3346 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 0.2301 2.1580 -0.7851 27 1 1.4937 1.8094 -1.9899 28 1 1.2823 4.0906 -2.9517 29 1 1.4096 5.5211 -1.9001 30 1 -0.0108 4.4545 -1.7838 31 1 3.5112 5.5388 -0.1760 32 1 4.7967 5.0844 -1.3206 33 1 3.2197 5.6420 -1.9289 34 1 5.0214 2.9212 -0.3567 35 1 3.7581 3.2700 0.8481 36 1 7.2120 1.0467 -0.1579 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250231040.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:42 Heat of formation + Delta-G solvation = -8.273781 kcal Electronic energy + Delta-G solvation = -15317.723445 eV Core-core repulsion = 13029.051741 eV Total energy + Delta-G solvation = -2288.671704 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.39461 -36.95702 -35.23755 -32.77092 -31.79201 -28.85477 -28.05360 -26.07392 -24.91067 -22.68957 -21.79498 -20.39263 -18.54179 -17.14220 -16.45942 -16.06535 -15.91627 -15.47796 -15.16550 -15.02025 -14.21754 -14.17984 -13.74014 -13.10191 -12.99289 -12.81696 -12.73158 -12.64310 -12.44523 -12.27131 -12.13278 -11.94558 -11.85696 -11.76212 -11.18362 -10.80962 -10.55374 -9.14829 -8.92535 -8.14179 -6.27325 1.40473 1.41271 1.52388 2.39946 3.06228 3.24841 3.35941 4.05064 4.19643 4.32045 4.34464 4.43152 4.53013 4.59219 4.65735 4.71702 4.79774 4.83304 4.94841 4.97490 5.02298 5.08595 5.12248 5.25331 5.27083 5.39645 5.49350 5.60678 5.69432 6.10983 6.26414 6.32081 6.52080 6.75565 6.88382 7.42346 8.91823 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028204 B = 0.012102 C = 0.008851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.513272 B = 2313.042324 C = 3162.734049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.062 3.938 3 N -0.548 5.548 4 C 0.060 3.940 5 C 0.078 3.922 6 H 0.030 0.970 7 C -0.133 4.133 8 N -0.560 5.560 9 C 0.029 3.971 10 C 0.085 3.915 11 C 0.230 3.770 12 H -0.039 1.039 13 C -0.526 4.526 14 H 0.059 0.941 15 C 0.013 3.987 16 N -0.917 5.917 17 Si 0.962 3.038 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.268 1.268 21 H 0.073 0.927 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.005 0.995 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.015 0.985 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.019 0.981 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.077 0.923 35 H -0.004 1.004 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.622 4.182 -1.562 10.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.066 4.066 3 N -0.274 5.274 4 C -0.068 4.068 5 C -0.030 4.030 6 H 0.048 0.952 7 C -0.191 4.191 8 N -0.285 5.285 9 C -0.119 4.119 10 C -0.043 4.043 11 C 0.122 3.878 12 H -0.022 1.022 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.787 3.213 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.193 1.193 21 H 0.092 0.908 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.023 0.977 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.033 0.967 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.014 0.986 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.444 4.210 -1.622 10.467 hybrid contribution 1.123 -0.626 0.582 1.412 sum -8.321 3.583 -1.039 9.119 Atomic orbital electron populations 1.21876 0.93008 1.02574 1.02345 1.21900 0.96164 0.89307 0.99231 1.62280 1.05388 1.11084 1.48611 1.22313 0.98934 0.92739 0.92844 1.21770 0.87697 0.95718 0.97837 0.95205 1.21801 1.00308 0.99167 0.97780 1.62289 1.04398 1.11352 1.50454 1.22370 1.00517 0.88736 1.00266 1.22029 0.99040 0.93369 0.89848 1.19002 0.83491 0.92373 0.92919 1.02193 1.21402 0.91906 1.29769 1.13357 0.92262 1.25765 0.98176 0.96834 0.97811 1.70022 1.06957 1.43759 1.34891 0.85491 0.77698 0.78692 0.79370 1.20072 1.20667 1.19296 0.90847 0.91836 0.91879 0.97714 0.92213 0.88214 0.96686 0.92438 0.91337 0.90098 0.96279 0.92734 0.89114 0.90492 0.98617 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.18 71.98 0.66 -3.43 16 2 C 0.06 2.51 5.42 86.31 0.47 2.98 16 3 N -0.55 -24.84 4.67 -874.89 -4.08 -28.93 16 4 C 0.06 2.26 4.21 86.31 0.36 2.62 16 5 C 0.08 2.83 2.56 44.92 0.12 2.95 16 6 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 7 C -0.13 -3.47 8.86 71.98 0.64 -2.83 16 8 N -0.56 -23.80 4.78 -896.54 -4.29 -28.09 16 9 C 0.03 1.01 9.13 127.69 1.17 2.17 16 10 C 0.09 4.42 4.66 86.31 0.40 4.82 16 11 C 0.23 12.42 1.91 44.18 0.08 12.51 16 12 H -0.04 -2.44 8.14 -2.39 -0.02 -2.46 16 13 C -0.53 -29.96 8.02 25.60 0.21 -29.75 16 14 H 0.06 3.35 6.50 -2.91 -0.02 3.33 16 15 C 0.01 0.75 5.30 84.66 0.45 1.20 16 16 N -0.92 -53.93 11.34 21.45 0.24 -53.68 16 17 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 22 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.06 1.67 6.26 -2.39 -0.01 1.66 16 24 H 0.00 0.20 8.08 -2.38 -0.02 0.18 16 25 H 0.06 2.58 6.68 -2.39 -0.02 2.57 16 26 H 0.10 3.08 5.99 -2.39 -0.01 3.07 16 27 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.59 6.36 -2.39 -0.02 1.58 16 30 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 1.96 8.13 -2.39 -0.02 1.94 16 33 H 0.09 2.54 6.25 -2.38 -0.01 2.53 16 34 H 0.08 4.42 6.11 -2.38 -0.01 4.41 16 35 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 36 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -64.03 272.84 -0.52 -64.55 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.03 Total: 6.54 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 4.55 Total: -6.77 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -8.13 Total: -110.70 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -64.03 -0.52 -64.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250231040.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.278 kcal (2) G-P(sol) polarization free energy of solvation -64.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds