Wall clock time and date at job start Mon Mar 30 2020 02:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47150 * 2 1 4 4 C 1.46958 * 110.99916 * 170.00062 * 3 2 1 5 5 C 1.53053 * 109.36277 * 183.19170 * 4 3 2 6 6 H 1.08997 * 109.48761 * 181.63322 * 5 4 3 7 7 C 1.52995 * 109.49159 * 61.56246 * 5 4 3 8 8 N 1.46956 * 109.36282 * 301.59567 * 5 4 3 9 9 C 1.46899 * 111.00063 * 183.19088 * 8 5 4 10 10 C 1.46956 * 110.88335 * 59.32002 * 8 5 4 11 11 H 1.09005 * 109.48550 * 60.66951 * 10 8 5 12 12 C 1.50694 * 109.49039 * 180.71316 * 10 8 5 13 13 H 1.08000 * 120.00563 * 359.95818 * 12 10 8 14 14 C 1.37885 * 119.99902 * 179.97438 * 12 10 8 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.46960 * 111.00071 * 293.82140 * 3 2 1 21 21 H 1.08997 * 109.47246 * 300.00210 * 1 2 3 22 22 H 1.09003 * 109.46807 * 60.00276 * 1 2 3 23 23 H 1.09003 * 109.47225 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47246 * 239.99790 * 2 1 3 25 25 H 1.09003 * 109.46807 * 119.99723 * 2 1 3 26 26 H 1.08994 * 109.49010 * 63.22249 * 4 3 2 27 27 H 1.09004 * 109.50508 * 303.16358 * 4 3 2 28 28 H 1.09004 * 109.47168 * 300.10716 * 7 5 4 29 29 H 1.08997 * 109.47053 * 60.11165 * 7 5 4 30 30 H 1.09004 * 109.47367 * 180.10856 * 7 5 4 31 31 H 1.08995 * 109.47070 * 296.20069 * 9 8 5 32 32 H 1.09005 * 109.47132 * 56.20064 * 9 8 5 33 33 H 1.09004 * 109.47091 * 176.20008 * 9 8 5 34 34 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.50432 * 56.85061 * 20 3 2 36 36 H 1.08996 * 109.46626 * 296.79016 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4691 1.4311 0.2382 5 6 3.9254 2.8903 0.3100 6 1 5.0047 2.9269 0.4577 7 6 3.2258 3.5871 1.4786 8 7 3.5790 3.5714 -0.9453 9 6 4.0687 4.9563 -0.9453 10 6 2.1296 3.5252 -1.1837 11 1 1.6108 4.0292 -0.3682 12 6 1.8118 4.2158 -2.4848 13 1 2.6065 4.6468 -3.0757 14 6 0.5063 4.2978 -2.9208 15 7 -0.4614 3.7729 -2.2015 16 14 0.1123 5.1546 -4.5333 17 1 -1.3523 5.1065 -4.7745 18 1 0.5567 6.5697 -4.4635 19 1 0.8192 4.4680 -5.6443 20 6 1.6728 2.0662 -1.2551 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.9879 0.9275 -0.5774 27 1 3.6994 0.9315 1.1793 28 1 2.1465 3.5493 1.3307 29 1 3.4829 3.0817 2.4095 30 1 3.5495 4.6267 1.5282 31 1 3.5670 5.5190 -0.1581 32 1 5.1440 4.9615 -0.7669 33 1 3.8584 5.4160 -1.9111 34 1 -1.3799 3.8309 -2.5081 35 1 0.5935 2.0299 -1.4027 36 1 2.1710 1.5695 -2.0877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250312188.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:51 Heat of formation + Delta-G solvation = 12.762435 kcal Electronic energy + Delta-G solvation = -15498.595648 eV Core-core repulsion = 13210.836143 eV Total energy + Delta-G solvation = -2287.759505 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.83080 -35.22063 -33.16238 -30.86752 -29.83696 -27.44922 -25.49511 -25.12607 -22.92259 -21.49438 -20.48136 -17.71282 -16.53093 -15.32659 -14.76205 -14.40137 -14.09199 -13.68333 -13.49037 -13.28983 -12.89724 -12.17134 -11.88509 -11.46763 -11.38718 -11.33343 -11.04274 -10.93853 -10.76404 -10.60497 -10.39644 -10.22480 -10.01020 -9.90842 -9.38182 -8.88420 -8.44270 -7.43694 -7.03211 -6.02117 -4.06365 3.31921 3.36390 3.39356 4.40154 4.76855 5.08638 5.31406 5.56600 5.63358 5.80886 5.88853 5.93546 6.02935 6.14056 6.19569 6.27844 6.34812 6.39466 6.46147 6.57091 6.64513 6.78307 6.84811 6.86955 6.97790 7.08233 7.43533 7.65871 7.79457 7.98821 8.05756 8.20722 8.36663 8.66712 9.01316 9.58394 11.04389 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026601 B = 0.013297 C = 0.009699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.345953 B = 2105.269139 C = 2886.181740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 N -0.542 5.542 4 C 0.067 3.933 5 C 0.082 3.918 6 H 0.065 0.935 7 C -0.174 4.174 8 N -0.538 5.538 9 C 0.038 3.962 10 C 0.220 3.780 11 H 0.015 0.985 12 C -0.508 4.508 13 H 0.063 0.937 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.896 3.104 17 H -0.288 1.288 18 H -0.278 1.278 19 H -0.277 1.277 20 C 0.064 3.936 21 H 0.058 0.942 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.021 0.979 25 H 0.057 0.943 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.016 0.984 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.262 0.738 35 H 0.113 0.887 36 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.421 -3.833 4.591 7.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 N -0.267 5.267 4 C -0.062 4.062 5 C -0.028 4.028 6 H 0.083 0.917 7 C -0.233 4.233 8 N -0.263 5.263 9 C -0.110 4.110 10 C 0.113 3.887 11 H 0.032 0.968 12 C -0.547 4.547 13 H 0.081 0.919 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.724 3.276 17 H -0.213 1.213 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.063 4.063 21 H 0.077 0.923 22 H 0.084 0.916 23 H 0.064 0.936 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.131 0.869 36 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 4.206 -3.863 4.573 7.316 hybrid contribution -0.235 0.399 -0.853 0.971 sum 3.971 -3.464 3.720 6.450 Atomic orbital electron populations 1.21757 0.95135 1.00102 1.03333 1.21937 0.96134 0.90214 0.98990 1.62348 1.12011 1.13975 1.38365 1.22029 0.89226 0.95925 0.99006 1.21645 0.97699 0.93722 0.89698 0.91681 1.22310 1.03617 0.99303 0.98026 1.62440 1.18802 1.14869 1.30176 1.22169 0.97139 0.90180 1.01519 1.19279 0.80990 0.92147 0.96244 0.96773 1.21142 0.92454 1.35500 1.05611 0.91877 1.24946 0.96276 0.95603 0.97240 1.69869 0.99975 1.45107 1.37930 0.86591 0.77047 0.80055 0.83899 1.21333 1.20319 1.20291 1.22551 1.03564 0.94572 0.85568 0.92318 0.91584 0.93601 0.96041 0.92405 0.95317 0.92134 0.90544 0.93777 0.93783 0.96565 0.94119 0.90835 0.92845 0.86934 0.96968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.85 37.16 0.37 -2.13 16 2 C 0.06 0.99 5.68 -3.82 -0.02 0.96 16 3 N -0.54 -11.20 4.02 -234.47 -0.94 -12.15 16 4 C 0.07 1.25 5.04 -3.77 -0.02 1.23 16 5 C 0.08 1.57 2.97 -67.66 -0.20 1.37 16 6 H 0.07 1.13 8.13 -51.93 -0.42 0.70 16 7 C -0.17 -3.21 8.37 37.16 0.31 -2.90 16 8 N -0.54 -12.01 4.73 -228.15 -1.08 -13.09 16 9 C 0.04 0.78 8.83 60.06 0.53 1.31 16 10 C 0.22 5.59 1.56 -68.81 -0.11 5.48 16 11 H 0.01 0.41 6.35 -51.93 -0.33 0.08 16 12 C -0.51 -13.88 7.93 -34.44 -0.27 -14.15 16 13 H 0.06 1.72 6.45 -52.49 -0.34 1.39 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 15 N -0.89 -24.89 11.34 55.43 0.63 -24.26 16 16 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.06 1.57 4.45 -3.77 -0.02 1.55 16 21 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 22 H 0.07 1.29 6.49 -51.93 -0.34 0.96 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 25 H 0.06 0.90 8.03 -51.93 -0.42 0.48 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 28 H 0.08 1.64 5.94 -51.93 -0.31 1.33 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.78 6.56 -51.93 -0.34 0.44 16 31 H 0.02 0.32 6.58 -51.93 -0.34 -0.02 16 32 H 0.04 0.71 8.13 -51.93 -0.42 0.28 16 33 H 0.07 1.57 6.28 -51.93 -0.33 1.24 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.11 2.98 4.32 -51.93 -0.22 2.75 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 269.40 15.07 4.06 4.06 Total: -1.00 -27.80 269.40 -7.78 -35.58 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.90 Total: -0.59 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 0.47 Total: -5.70 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -1.39 Total: -49.49 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.80 -7.78 -35.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250312188.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.340 kcal (2) G-P(sol) polarization free energy of solvation -27.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds