Wall clock time and date at job start Mon Mar 30 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 109.46900 * 2 1 4 4 C 1.48087 * 111.00131 * 297.43215 * 3 2 1 5 5 C 1.46091 * 112.15345 * 156.49155 * 4 3 2 6 6 H 1.09001 * 108.94341 * 300.00090 * 5 4 3 7 7 C 1.50704 * 108.94251 * 181.29104 * 5 4 3 8 8 H 1.07998 * 120.00035 * 0.02562 * 7 5 4 9 9 C 1.37878 * 119.99662 * 180.02562 * 7 5 4 10 10 N 1.31514 * 120.00409 * 359.97438 * 9 7 5 11 11 Si 1.86796 * 119.99671 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47461 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47639 * 119.99959 * 11 9 7 14 14 H 1.48506 * 109.47179 * 240.00091 * 11 9 7 15 15 N 1.48082 * 112.15925 * 60.69113 * 5 4 3 16 16 C 1.44181 * 109.89457 * 279.63984 * 15 5 4 17 17 C 1.54319 * 112.60423 * 94.34906 * 16 15 5 18 18 C 1.44180 * 110.99812 * 174.89245 * 3 2 1 19 19 H 1.08999 * 108.85389 * 96.70371 * 18 3 2 20 20 C 1.53002 * 108.85000 * 338.32007 * 18 3 2 21 21 H 1.09003 * 109.47219 * 307.05273 * 1 2 3 22 22 H 1.09003 * 109.47117 * 187.06204 * 1 2 3 23 23 H 1.08994 * 109.47388 * 67.05557 * 1 2 3 24 24 H 1.08996 * 109.47413 * 120.00139 * 2 1 3 25 25 H 1.09001 * 109.46977 * 240.00468 * 2 1 3 26 26 H 1.08995 * 108.94686 * 277.18811 * 4 3 2 27 27 H 1.09007 * 108.94238 * 35.80856 * 4 3 2 28 28 H 0.96999 * 120.00002 * 180.02562 * 10 9 7 29 29 H 1.00899 * 110.99727 * 156.46884 * 15 5 4 30 30 H 1.08998 * 108.85454 * 215.15217 * 16 15 5 31 31 H 1.09001 * 108.85423 * 333.54618 * 16 15 5 32 32 H 1.09004 * 109.02811 * 79.49777 * 17 16 15 33 33 H 1.08995 * 109.02468 * 198.41016 * 17 16 15 34 34 H 1.08996 * 109.47319 * 63.03092 * 20 18 3 35 35 H 1.09009 * 109.46842 * 183.02776 * 20 18 3 36 36 H 1.08996 * 109.47124 * 303.02476 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5961 2.0977 -1.2270 5 6 1.5661 3.5463 -1.0402 6 1 0.8623 3.7858 -0.2430 7 6 1.0972 4.1947 -2.3173 8 1 0.8492 3.5846 -3.1732 9 6 0.9848 5.5668 -2.3928 10 7 1.2863 6.3097 -1.3503 11 14 0.4029 6.3704 -3.9755 12 1 0.1293 5.3224 -4.9914 13 1 -0.8388 7.1411 -3.7120 14 1 1.4562 7.2867 -4.4817 15 7 2.8967 4.0915 -0.6867 16 6 3.1520 3.8902 0.7180 17 6 3.9456 2.5965 0.9972 18 6 3.4559 1.4253 0.1198 19 1 3.8897 1.5250 -0.8751 20 6 3.9376 0.1105 0.7366 21 1 -0.3634 0.6192 0.8202 22 1 -0.3633 -1.0199 0.1263 23 1 -0.3634 0.4006 -0.9463 24 1 1.8934 -0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 2.2905 1.8590 -2.0325 27 1 0.5997 1.7565 -1.5083 28 1 1.2068 7.2750 -1.4034 29 1 2.9633 5.0685 -0.9299 30 1 3.7186 4.7401 1.0984 31 1 2.1994 3.8399 1.2455 32 1 5.0012 2.7762 0.7933 33 1 3.8275 2.3267 2.0466 34 1 3.6915 -0.7155 0.0694 35 1 5.0172 0.1513 0.8816 36 1 3.4473 -0.0407 1.6983 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250316392.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:31 Heat of formation + Delta-G solvation = 11.215152 kcal Electronic energy + Delta-G solvation = -15336.147955 eV Core-core repulsion = 13048.321355 eV Total energy + Delta-G solvation = -2287.826600 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.85262 -35.14606 -33.22684 -31.66802 -30.17219 -27.81558 -26.69276 -24.34983 -22.65047 -21.13161 -19.33798 -18.68711 -16.69900 -15.50239 -14.87905 -14.76569 -14.14315 -13.95815 -13.54503 -13.36345 -12.57352 -12.29045 -11.95123 -11.82654 -11.31410 -11.21097 -11.01013 -10.86696 -10.73942 -10.73634 -10.40427 -10.34338 -9.98456 -9.49211 -9.44976 -8.88024 -8.64624 -7.48139 -6.80269 -6.08603 -4.15161 3.27444 3.35683 3.39717 4.35886 4.64405 5.16648 5.35655 5.47310 5.49867 5.62279 5.76446 5.88431 5.90954 6.02099 6.11041 6.22177 6.26167 6.34149 6.41710 6.54483 6.58217 6.63995 6.70354 6.82736 6.94814 7.08983 7.33141 7.54529 7.82676 7.96322 8.01532 8.26259 8.76162 9.00933 9.34112 9.53954 10.98367 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037554 B = 0.009986 C = 0.008523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.415062 B = 2803.121170 C = 3284.427225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 N -0.533 5.533 4 C 0.078 3.922 5 C 0.212 3.788 6 H 0.005 0.995 7 C -0.512 4.512 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.898 5.898 11 Si 0.898 3.102 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.283 1.283 15 N -0.684 5.684 16 C 0.075 3.925 17 C -0.096 4.096 18 C 0.095 3.905 19 H 0.048 0.952 20 C -0.160 4.160 21 H 0.062 0.938 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.022 0.978 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.263 0.737 29 H 0.364 0.636 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 -9.038 3.390 9.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.079 4.079 3 N -0.258 5.258 4 C -0.049 4.049 5 C 0.105 3.895 6 H 0.023 0.977 7 C -0.552 4.552 8 H 0.077 0.923 9 C -0.137 4.137 10 N -0.539 5.539 11 Si 0.726 3.274 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.209 1.209 15 N -0.320 5.320 16 C -0.057 4.057 17 C -0.135 4.135 18 C -0.014 4.014 19 H 0.066 0.934 20 C -0.217 4.217 21 H 0.081 0.919 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.188 0.812 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.553 -9.168 3.643 10.190 hybrid contribution -0.493 0.812 -1.058 1.422 sum 2.060 -8.355 2.585 8.985 Atomic orbital electron populations 1.21860 0.95683 1.00537 1.02716 1.22196 0.95424 0.90618 0.99698 1.61751 1.10880 1.12863 1.40275 1.21342 0.98752 0.96688 0.88123 1.17972 0.86683 0.89188 0.95701 0.97726 1.21356 1.43456 0.91725 0.98632 0.92350 1.25008 0.94792 0.97380 0.96519 1.69719 1.49508 1.05465 1.29194 0.86447 0.78274 0.79299 0.83402 1.19783 1.21073 1.20946 1.60315 1.32039 1.25829 1.13846 1.21321 0.97755 0.94155 0.92439 1.22071 0.98399 0.95566 0.97500 1.21212 0.87962 0.93551 0.98669 0.93442 1.22311 1.00639 0.97844 1.00938 0.91929 0.93213 0.92466 0.90947 0.95979 0.95411 0.92065 0.92659 0.81168 0.94974 0.95368 0.93213 0.93456 0.93034 0.92993 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.65 37.16 0.36 -1.88 16 2 C 0.05 0.77 4.41 -3.82 -0.02 0.75 16 3 N -0.53 -10.24 4.28 -230.95 -0.99 -11.23 16 4 C 0.08 1.72 4.12 -6.45 -0.03 1.70 16 5 C 0.21 5.46 2.11 -71.49 -0.15 5.31 16 6 H 0.01 0.15 7.37 -51.93 -0.38 -0.24 16 7 C -0.51 -14.07 8.67 -34.44 -0.30 -14.37 16 8 H 0.06 1.58 7.72 -52.49 -0.40 1.18 16 9 C 0.06 1.76 5.16 -17.82 -0.09 1.67 16 10 N -0.90 -25.24 11.45 55.43 0.63 -24.61 16 11 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 N -0.68 -16.98 6.20 -111.81 -0.69 -17.67 16 16 C 0.08 1.65 6.00 -4.59 -0.03 1.62 16 17 C -0.10 -1.77 5.79 -25.35 -0.15 -1.91 16 18 C 0.10 1.73 2.48 -68.47 -0.17 1.56 16 19 H 0.05 0.96 7.17 -51.93 -0.37 0.59 16 20 C -0.16 -2.27 7.66 37.16 0.28 -1.99 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.90 6.39 -51.93 -0.33 0.57 16 24 H 0.07 1.03 5.77 -51.93 -0.30 0.73 16 25 H 0.02 0.34 7.70 -51.93 -0.40 -0.06 16 26 H 0.03 0.64 7.37 -51.93 -0.38 0.26 16 27 H 0.06 1.33 5.70 -51.93 -0.30 1.03 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.36 9.83 6.18 -39.29 -0.24 9.59 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.03 0.67 7.16 -51.93 -0.37 0.30 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.80 7.98 -51.93 -0.41 0.38 16 34 H 0.05 0.69 6.63 -51.93 -0.34 0.34 16 35 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.06 0.80 7.19 -51.93 -0.37 0.43 16 LS Contribution 268.18 15.07 4.04 4.04 Total: -1.00 -27.70 268.18 -8.18 -35.88 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.87 Total: 5.00 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -0.29 Total: -7.54 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -1.05 Total: -53.51 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.70 -8.18 -35.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250316392.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.094 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds