Wall clock time and date at job start Mon Mar 30 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 109.46900 * 2 1 4 4 C 1.48087 * 111.00131 * 297.43215 * 3 2 1 5 5 C 1.46091 * 112.15345 * 156.49155 * 4 3 2 6 6 H 1.09001 * 108.94341 * 300.00090 * 5 4 3 7 7 C 1.50704 * 108.94251 * 181.29104 * 5 4 3 8 8 H 1.07998 * 120.00035 * 0.02562 * 7 5 4 9 9 C 1.37878 * 119.99662 * 180.02562 * 7 5 4 10 10 N 1.31514 * 120.00409 * 359.97438 * 9 7 5 11 11 Si 1.86796 * 119.99671 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47461 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47639 * 119.99959 * 11 9 7 14 14 H 1.48506 * 109.47179 * 240.00091 * 11 9 7 15 15 N 1.48082 * 112.15925 * 60.69113 * 5 4 3 16 16 C 1.44181 * 109.89457 * 279.63984 * 15 5 4 17 17 C 1.54319 * 112.60423 * 94.34906 * 16 15 5 18 18 C 1.44180 * 110.99812 * 174.89245 * 3 2 1 19 19 H 1.08999 * 108.85389 * 96.70371 * 18 3 2 20 20 C 1.53002 * 108.85000 * 338.32007 * 18 3 2 21 21 H 1.09003 * 109.47219 * 307.05273 * 1 2 3 22 22 H 1.09003 * 109.47117 * 187.06204 * 1 2 3 23 23 H 1.08994 * 109.47388 * 67.05557 * 1 2 3 24 24 H 1.08996 * 109.47413 * 120.00139 * 2 1 3 25 25 H 1.09001 * 109.46977 * 240.00468 * 2 1 3 26 26 H 1.08995 * 108.94686 * 277.18811 * 4 3 2 27 27 H 1.09007 * 108.94238 * 35.80856 * 4 3 2 28 28 H 0.96999 * 120.00002 * 180.02562 * 10 9 7 29 29 H 1.00899 * 110.99727 * 156.46884 * 15 5 4 30 30 H 1.08998 * 108.85454 * 215.15217 * 16 15 5 31 31 H 1.09001 * 108.85423 * 333.54618 * 16 15 5 32 32 H 1.09004 * 109.02811 * 79.49777 * 17 16 15 33 33 H 1.08995 * 109.02468 * 198.41016 * 17 16 15 34 34 H 1.08996 * 109.47319 * 63.03092 * 20 18 3 35 35 H 1.09009 * 109.46842 * 183.02776 * 20 18 3 36 36 H 1.08996 * 109.47124 * 303.02476 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5961 2.0977 -1.2270 5 6 1.5661 3.5463 -1.0402 6 1 0.8623 3.7858 -0.2430 7 6 1.0972 4.1947 -2.3173 8 1 0.8492 3.5846 -3.1732 9 6 0.9848 5.5668 -2.3928 10 7 1.2863 6.3097 -1.3503 11 14 0.4029 6.3704 -3.9755 12 1 0.1293 5.3224 -4.9914 13 1 -0.8388 7.1411 -3.7120 14 1 1.4562 7.2867 -4.4817 15 7 2.8967 4.0915 -0.6867 16 6 3.1520 3.8902 0.7180 17 6 3.9456 2.5965 0.9972 18 6 3.4559 1.4253 0.1198 19 1 3.8897 1.5250 -0.8751 20 6 3.9376 0.1105 0.7366 21 1 -0.3634 0.6192 0.8202 22 1 -0.3633 -1.0199 0.1263 23 1 -0.3634 0.4006 -0.9463 24 1 1.8934 -0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 2.2905 1.8590 -2.0325 27 1 0.5997 1.7565 -1.5083 28 1 1.2068 7.2750 -1.4034 29 1 2.9633 5.0685 -0.9299 30 1 3.7186 4.7401 1.0984 31 1 2.1994 3.8399 1.2455 32 1 5.0012 2.7762 0.7933 33 1 3.8275 2.3267 2.0466 34 1 3.6915 -0.7155 0.0694 35 1 5.0172 0.1513 0.8816 36 1 3.4473 -0.0407 1.6983 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250316392.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:31 Heat of formation + Delta-G solvation = -8.287669 kcal Electronic energy + Delta-G solvation = -15336.993661 eV Core-core repulsion = 13048.321355 eV Total energy + Delta-G solvation = -2288.672306 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.43338 -36.94934 -34.90002 -33.55101 -31.68377 -29.35710 -28.37091 -26.24158 -24.14072 -22.72815 -21.15789 -20.17005 -18.74641 -17.17307 -16.66297 -16.38104 -15.86577 -15.49203 -15.25881 -14.89715 -14.26248 -13.89575 -13.51708 -13.17892 -12.91479 -12.79068 -12.65404 -12.53974 -12.39043 -12.24681 -12.09694 -11.76467 -11.59592 -11.30643 -11.11508 -10.83575 -10.74047 -9.01073 -8.81304 -8.18294 -6.34037 1.40110 1.42103 1.53941 2.39355 3.05308 3.16478 3.98242 4.04616 4.13759 4.27670 4.36611 4.48569 4.60442 4.63670 4.70832 4.73836 4.86728 4.94475 4.95749 5.03004 5.09197 5.20316 5.22144 5.35735 5.38549 5.41092 5.45646 5.50607 5.81658 6.07994 6.39309 6.55417 6.68810 6.96391 7.24585 7.39699 8.87450 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037554 B = 0.009986 C = 0.008523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.415062 B = 2803.121170 C = 3284.427225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 N -0.543 5.543 4 C 0.090 3.910 5 C 0.220 3.780 6 H -0.039 1.039 7 C -0.538 4.538 8 H 0.055 0.945 9 C 0.019 3.981 10 N -0.922 5.922 11 Si 0.966 3.034 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.278 1.278 15 N -0.684 5.684 16 C 0.074 3.926 17 C -0.090 4.090 18 C 0.090 3.910 19 H 0.023 0.977 20 C -0.149 4.149 21 H 0.048 0.952 22 H 0.082 0.918 23 H 0.040 0.960 24 H 0.098 0.902 25 H 0.029 0.971 26 H 0.015 0.985 27 H 0.061 0.939 28 H 0.266 0.734 29 H 0.348 0.652 30 H 0.036 0.964 31 H 0.002 0.998 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.941 -10.499 3.483 11.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 N -0.268 5.268 4 C -0.038 4.038 5 C 0.112 3.888 6 H -0.022 1.022 7 C -0.577 4.577 8 H 0.074 0.926 9 C -0.180 4.180 10 N -0.563 5.563 11 Si 0.791 3.209 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.204 1.204 15 N -0.318 5.318 16 C -0.057 4.057 17 C -0.129 4.129 18 C -0.020 4.020 19 H 0.041 0.959 20 C -0.206 4.206 21 H 0.067 0.933 22 H 0.101 0.899 23 H 0.059 0.941 24 H 0.116 0.884 25 H 0.047 0.953 26 H 0.034 0.966 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.170 0.830 30 H 0.054 0.946 31 H 0.020 0.980 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.095 -10.660 3.752 11.717 hybrid contribution -0.667 1.285 -1.031 1.778 sum 2.428 -9.375 2.720 10.059 Atomic orbital electron populations 1.21842 0.95207 1.02190 1.01238 1.22355 0.95861 0.88667 1.01172 1.61689 1.11874 1.15004 1.38250 1.21015 0.98556 0.94951 0.89256 1.17865 0.86015 0.91351 0.93581 1.02186 1.21664 1.44330 0.92464 0.99262 0.92625 1.25789 0.94678 0.97820 0.99703 1.69834 1.49780 1.05740 1.30946 0.85396 0.77815 0.78237 0.79466 1.19241 1.20621 1.20352 1.60409 1.31258 1.24531 1.15624 1.21419 0.97132 0.96697 0.90486 1.22036 0.98397 0.93617 0.98862 1.21268 0.87191 0.95750 0.97757 0.95879 1.22200 1.01758 0.95441 1.01209 0.93271 0.89921 0.94107 0.88404 0.95263 0.96648 0.92099 0.92451 0.83018 0.94573 0.97983 0.91767 0.91359 0.91873 0.91243 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 9.65 71.98 0.69 -3.45 16 2 C 0.05 1.36 4.41 86.30 0.38 1.74 16 3 N -0.54 -20.52 4.28 -884.59 -3.79 -24.31 16 4 C 0.09 4.07 4.12 83.95 0.35 4.42 16 5 C 0.22 11.74 2.11 41.82 0.09 11.82 16 6 H -0.04 -2.40 7.37 -2.39 -0.02 -2.42 16 7 C -0.54 -30.37 8.67 25.60 0.22 -30.15 16 8 H 0.06 3.09 7.72 -2.91 -0.02 3.06 16 9 C 0.02 1.07 5.16 84.66 0.44 1.50 16 10 N -0.92 -53.00 11.45 21.45 0.25 -52.76 16 11 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 14 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 15 N -0.68 -34.95 6.20 -507.67 -3.15 -38.10 16 16 C 0.07 3.31 6.00 87.26 0.52 3.83 16 17 C -0.09 -3.18 5.79 31.49 0.18 -3.00 16 18 C 0.09 3.11 2.48 45.87 0.11 3.23 16 19 H 0.02 0.92 7.17 -2.39 -0.02 0.90 16 20 C -0.15 -3.69 7.66 71.98 0.55 -3.14 16 21 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.04 1.26 6.39 -2.39 -0.02 1.25 16 24 H 0.10 2.41 5.77 -2.39 -0.01 2.40 16 25 H 0.03 0.83 7.70 -2.39 -0.02 0.82 16 26 H 0.02 0.73 7.37 -2.39 -0.02 0.71 16 27 H 0.06 2.71 5.70 -2.38 -0.01 2.70 16 28 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.35 19.44 6.18 -89.69 -0.55 18.88 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.00 0.09 7.16 -2.39 -0.02 0.07 16 32 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.07 2.13 7.98 -2.39 -0.02 2.11 16 34 H 0.06 1.44 6.63 -2.39 -0.02 1.42 16 35 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.07 1.60 7.19 -2.39 -0.02 1.58 16 Total: -1.00 -60.94 268.18 -0.63 -61.57 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.49 Total: 20.99 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 3.54 Total: -13.19 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -6.69 Total: -115.16 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -60.94 -0.63 -61.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250316392.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.283 kcal (2) G-P(sol) polarization free energy of solvation -60.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds