Wall clock time and date at job start Mon Mar 30 2020 02:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.47142 * 2 1 4 4 C 1.46955 * 111.00111 * 66.04254 * 3 2 1 5 5 C 1.53052 * 109.36069 * 183.18862 * 4 3 2 6 6 H 1.09001 * 109.50610 * 61.58116 * 5 4 3 7 7 C 1.50701 * 109.48850 * 181.63040 * 5 4 3 8 8 H 1.08003 * 120.00017 * 84.91251 * 7 5 4 9 9 C 1.37878 * 120.00572 * 264.91652 * 7 5 4 10 10 N 1.31515 * 119.99582 * 5.65736 * 9 7 5 11 11 Si 1.86799 * 120.00252 * 185.65741 * 9 7 5 12 12 H 1.48500 * 109.47060 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46893 * 120.00009 * 11 9 7 14 14 H 1.48500 * 109.46964 * 239.99563 * 11 9 7 15 15 N 1.46953 * 109.36861 * 301.59801 * 5 4 3 16 16 C 1.46901 * 111.00177 * 183.18718 * 15 5 4 17 17 C 1.46955 * 110.87587 * 59.32190 * 15 5 4 18 18 C 1.46957 * 110.99970 * 189.84628 * 3 2 1 19 19 H 1.08998 * 109.48881 * 56.83620 * 18 3 2 20 20 C 1.53004 * 109.48675 * 296.79863 * 18 3 2 21 21 H 1.09004 * 109.46932 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47158 * 300.00321 * 1 2 3 23 23 H 1.08999 * 109.47008 * 60.00446 * 1 2 3 24 24 H 1.08992 * 109.47397 * 239.99144 * 2 1 3 25 25 H 1.08999 * 109.47008 * 119.99554 * 2 1 3 26 26 H 1.08997 * 109.49098 * 63.22827 * 4 3 2 27 27 H 1.08997 * 109.49033 * 303.15391 * 4 3 2 28 28 H 0.96998 * 120.00267 * 179.97438 * 10 9 7 29 29 H 1.09002 * 109.46767 * 65.60554 * 16 15 5 30 30 H 1.08994 * 109.47380 * 305.60248 * 16 15 5 31 31 H 1.08998 * 109.46864 * 185.60190 * 16 15 5 32 32 H 1.09004 * 109.49037 * 60.65038 * 17 15 5 33 33 H 1.09010 * 109.48971 * 180.71461 * 17 15 5 34 34 H 1.08997 * 109.47415 * 60.00116 * 20 18 3 35 35 H 1.09002 * 109.46815 * 180.02562 * 20 18 3 36 36 H 1.09001 * 109.46805 * 299.99540 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6700 2.0672 1.2537 5 6 2.1265 3.5263 1.1818 6 1 1.6098 4.0295 0.3646 7 6 1.8053 4.2182 2.4815 8 1 2.4915 4.1515 3.3128 9 6 0.6353 4.9365 2.6094 10 7 -0.2517 4.9268 1.6384 11 14 0.3102 5.9235 4.1616 12 1 1.4554 5.7705 5.0945 13 1 0.1460 7.3572 3.8112 14 1 -0.9291 5.4280 4.8127 15 7 3.5765 3.5723 0.9473 16 6 4.0661 4.9573 0.9471 17 6 3.9261 2.8900 -0.3065 18 6 3.4696 1.4309 -0.2346 19 1 3.7020 0.9304 -1.1746 20 6 4.1949 0.7245 0.9126 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8898 25 1 1.8933 -0.5138 0.8900 26 1 2.1663 1.5717 2.0881 27 1 0.5903 2.0307 1.3987 28 1 -1.0749 5.4317 1.7284 29 1 3.9438 5.3859 1.9418 30 1 3.4969 5.5438 0.2261 31 1 5.1211 4.9696 0.6735 32 1 3.4298 3.3856 -1.1409 33 1 5.0059 2.9264 -0.4515 34 1 3.8682 -0.3140 0.9643 35 1 5.2704 0.7592 0.7385 36 1 3.9631 1.2257 1.8523 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250325939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:35 Heat of formation + Delta-G solvation = -10.885916 kcal Electronic energy + Delta-G solvation = -15411.212943 eV Core-core repulsion = 13122.427969 eV Total energy + Delta-G solvation = -2288.784974 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.53865 -36.80894 -34.88138 -32.99807 -31.45738 -28.73820 -27.92240 -26.57488 -24.68193 -23.07803 -22.16910 -19.40704 -18.53784 -17.26621 -16.59152 -16.00870 -15.83074 -15.42638 -15.15384 -14.90921 -14.16575 -13.97533 -13.61840 -13.32391 -13.10187 -12.90370 -12.76786 -12.51041 -12.45732 -12.31026 -12.19151 -11.85251 -11.72065 -11.64837 -11.16958 -10.94209 -10.54163 -9.07911 -8.84788 -8.14716 -6.26616 1.38816 1.41022 1.53330 2.40351 3.03498 3.24725 3.51195 4.06213 4.14842 4.28944 4.43334 4.44921 4.65045 4.67263 4.70172 4.72866 4.77584 4.83130 4.92137 5.00355 5.02308 5.11606 5.18388 5.21382 5.34139 5.41412 5.58818 5.60257 5.73312 6.08863 6.30541 6.35073 6.51882 6.80029 6.96914 7.43912 8.92795 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029791 B = 0.011798 C = 0.009428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.654527 B = 2372.711885 C = 2969.138830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 N -0.555 5.555 4 C 0.094 3.906 5 C 0.216 3.784 6 H -0.013 1.013 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.016 3.984 10 N -0.922 5.922 11 Si 0.956 3.044 12 H -0.265 1.265 13 H -0.280 1.280 14 H -0.280 1.280 15 N -0.547 5.547 16 C 0.052 3.948 17 C 0.059 3.941 18 C 0.083 3.917 19 H 0.098 0.902 20 C -0.163 4.163 21 H 0.081 0.919 22 H 0.032 0.968 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.032 0.968 26 H 0.018 0.982 27 H 0.044 0.956 28 H 0.262 0.738 29 H 0.056 0.944 30 H -0.005 1.005 31 H 0.076 0.924 32 H 0.011 0.989 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 -7.524 -3.067 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 N -0.280 5.280 4 C -0.035 4.035 5 C 0.109 3.891 6 H 0.005 0.995 7 C -0.554 4.554 8 H 0.071 0.929 9 C -0.184 4.184 10 N -0.561 5.561 11 Si 0.782 3.218 12 H -0.189 1.189 13 H -0.206 1.206 14 H -0.206 1.206 15 N -0.272 5.272 16 C -0.097 4.097 17 C -0.070 4.070 18 C -0.025 4.025 19 H 0.116 0.884 20 C -0.222 4.222 21 H 0.100 0.900 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.107 0.893 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.013 0.987 31 H 0.094 0.906 32 H 0.029 0.971 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.184 -7.462 -3.127 10.183 hybrid contribution -0.706 0.876 0.736 1.345 sum 5.477 -6.586 -2.390 8.893 Atomic orbital electron populations 1.21752 0.95331 1.01844 1.01154 1.22086 0.95885 0.88664 1.00871 1.62474 1.13744 1.15990 1.35811 1.21982 0.98114 0.94929 0.88428 1.19168 0.83092 0.91908 0.94951 0.99515 1.21246 1.04467 1.31159 0.98570 0.92855 1.25775 0.95883 0.97295 0.99442 1.70121 1.09139 1.42455 1.34368 0.85533 0.78171 0.78375 0.79754 1.18895 1.20595 1.20595 1.62291 1.16467 1.15699 1.32699 1.22009 0.98390 0.88914 1.00370 1.22213 1.00167 0.94181 0.90402 1.21802 0.86536 0.95247 0.98936 0.88392 1.22187 1.01116 0.99367 0.99531 0.90045 0.94911 0.93137 0.89346 0.95021 0.96427 0.93804 0.92917 0.92529 0.98685 0.90552 0.97108 0.88988 0.92557 0.90993 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.84 71.98 0.71 -3.81 16 2 C 0.05 1.65 5.07 86.30 0.44 2.09 16 3 N -0.56 -21.81 4.66 -870.52 -4.06 -25.86 16 4 C 0.09 4.46 4.29 86.31 0.37 4.83 16 5 C 0.22 11.29 2.02 44.18 0.09 11.38 16 6 H -0.01 -0.80 7.39 -2.39 -0.02 -0.82 16 7 C -0.52 -28.79 7.05 25.60 0.18 -28.61 16 8 H 0.05 3.00 7.82 -2.91 -0.02 2.98 16 9 C 0.02 0.88 5.45 84.65 0.46 1.34 16 10 N -0.92 -54.91 12.85 21.45 0.28 -54.64 16 11 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 12 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 15 N -0.55 -24.14 4.09 -900.97 -3.69 -27.83 16 16 C 0.05 2.14 9.19 127.69 1.17 3.31 16 17 C 0.06 2.17 5.04 86.31 0.43 2.61 16 18 C 0.08 2.79 2.95 44.92 0.13 2.93 16 19 H 0.10 2.75 8.07 -2.39 -0.02 2.73 16 20 C -0.16 -5.01 8.37 71.98 0.60 -4.41 16 21 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 22 H 0.03 1.19 6.49 -2.39 -0.02 1.18 16 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.09 2.32 8.03 -2.39 -0.02 2.30 16 25 H 0.03 0.98 6.90 -2.39 -0.02 0.96 16 26 H 0.02 0.85 6.35 -2.39 -0.02 0.83 16 27 H 0.04 2.31 6.33 -2.39 -0.02 2.30 16 28 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 29 H 0.06 2.49 7.22 -2.39 -0.02 2.47 16 30 H -0.01 -0.25 8.12 -2.39 -0.02 -0.27 16 31 H 0.08 2.54 8.04 -2.39 -0.02 2.52 16 32 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.09 2.79 8.08 -2.38 -0.02 2.77 16 34 H 0.06 1.55 6.70 -2.39 -0.02 1.53 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.68 5.94 -2.39 -0.01 1.67 16 Total: -1.00 -62.71 274.11 0.18 -62.54 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.03 Total: 7.97 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 4.59 Total: -8.35 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -7.47 Total: -108.33 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -62.71 0.18 -62.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250325939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.653 kcal (2) G-P(sol) polarization free energy of solvation -62.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds