Wall clock time and date at job start Mon Mar 30 2020 02:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46846 * 110.99941 * 2 1 4 4 C 1.53041 * 109.51932 * 174.15950 * 3 2 1 5 5 C 1.53128 * 109.30841 * 59.16285 * 4 3 2 6 6 C 1.53120 * 109.15630 * 302.40236 * 5 4 3 7 7 H 1.08993 * 109.50739 * 297.63249 * 6 5 4 8 8 C 1.53009 * 109.50257 * 177.55509 * 6 5 4 9 9 C 1.52994 * 109.46901 * 175.07933 * 8 6 5 10 10 N 1.46510 * 109.46884 * 180.02562 * 9 8 6 11 11 C 1.36935 * 119.99776 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00259 * 359.97438 * 11 10 9 13 13 C 1.38813 * 119.99472 * 179.97438 * 11 10 9 14 14 N 1.31618 * 120.00240 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99684 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46845 * 90.00337 * 15 13 11 17 17 H 1.48503 * 109.47399 * 209.99827 * 15 13 11 18 18 H 1.48498 * 109.47295 * 330.00433 * 15 13 11 19 19 C 1.46847 * 110.99753 * 235.79301 * 2 1 3 20 20 H 1.08998 * 109.47608 * 184.20653 * 1 2 3 21 21 H 1.09005 * 109.46945 * 304.20400 * 1 2 3 22 22 H 1.09000 * 109.47402 * 64.20565 * 1 2 3 23 23 H 1.08998 * 109.46625 * 294.17926 * 3 2 1 24 24 H 1.09001 * 109.45953 * 54.14987 * 3 2 1 25 25 H 1.08998 * 109.50195 * 179.11853 * 4 3 2 26 26 H 1.08999 * 109.50589 * 299.24125 * 4 3 2 27 27 H 1.08991 * 109.55541 * 182.47917 * 5 4 3 28 28 H 1.08998 * 109.49065 * 62.28526 * 5 4 3 29 29 H 1.08995 * 109.46659 * 55.07611 * 8 6 5 30 30 H 1.09003 * 109.46770 * 295.08158 * 8 6 5 31 31 H 1.08995 * 109.47727 * 60.00332 * 9 8 6 32 32 H 1.09001 * 109.47087 * 299.99809 * 9 8 6 33 33 H 0.96998 * 119.99423 * 359.97438 * 10 9 8 34 34 H 0.97000 * 119.99789 * 359.97438 * 14 13 11 35 35 H 1.09006 * 109.46207 * 65.82102 * 19 2 1 36 36 H 1.09001 * 109.45437 * 305.85255 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1196 0.5366 -1.0139 6 6 3.5180 -0.8715 -1.0209 7 1 3.7812 -1.3844 -0.0959 8 6 4.0679 -1.6559 -2.2141 9 6 3.5631 -3.0988 -2.1520 10 7 4.0901 -3.8501 -3.2941 11 6 3.7701 -5.1723 -3.4503 12 1 3.1297 -5.6615 -2.7313 13 6 4.2690 -5.8839 -4.5327 14 7 5.0491 -5.2876 -5.4092 15 14 3.8331 -7.6878 -4.7454 16 1 2.5946 -7.8055 -5.5563 17 1 4.9456 -8.3878 -5.4366 18 1 3.6126 -8.3043 -3.4126 19 6 1.9952 -0.7707 -1.1338 20 1 -0.3634 -1.0248 0.0754 21 1 -0.3633 0.5777 0.8500 22 1 -0.3634 0.4472 -0.9253 23 1 1.7325 1.8609 -0.9375 24 1 1.5634 1.9256 0.8330 25 1 3.9100 2.3511 0.1310 26 1 3.7814 0.8566 1.0906 27 1 5.2003 0.4704 -0.8897 28 1 3.8900 1.0354 -1.9554 29 1 5.1573 -1.6503 -2.1815 30 1 3.7297 -1.1921 -3.1407 31 1 2.4737 -3.1045 -2.1845 32 1 3.9013 -3.5625 -1.2253 33 1 4.6650 -3.4105 -3.9400 34 1 5.2751 -4.3507 -5.2989 35 1 1.7323 -0.2707 -2.0661 36 1 1.5633 -1.7715 -1.1242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258790147.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:57 Heat of formation + Delta-G solvation = -5.493878 kcal Electronic energy + Delta-G solvation = -14337.977060 eV Core-core repulsion = 12049.425902 eV Total energy + Delta-G solvation = -2288.551158 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.20213 -35.62025 -33.90230 -32.37712 -30.38957 -27.19387 -26.77059 -23.84832 -22.98186 -22.02675 -20.58199 -19.62408 -17.19103 -15.79135 -15.44491 -14.73518 -14.62452 -14.44059 -13.70589 -13.51751 -13.36077 -13.20445 -12.83888 -12.25162 -12.01570 -11.84059 -11.24821 -11.09625 -10.88923 -10.64721 -10.56237 -10.35761 -10.22306 -10.02250 -9.93563 -9.10106 -8.80942 -8.37057 -6.93451 -6.05837 -3.04322 3.54557 3.59998 3.73968 3.89049 4.67949 4.78149 4.82887 4.90722 5.08133 5.28858 5.35391 5.37585 5.44946 5.59435 5.64264 5.69722 5.76492 5.78277 5.82952 5.85140 5.95595 6.02661 6.12033 6.26423 6.28650 6.37405 6.50168 6.84916 6.91093 7.04097 7.07573 7.86794 8.81139 9.29825 10.16174 10.31844 11.43262 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052943 B = 0.005671 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.748194 B = 4936.045435 C = 5317.152747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.055 3.945 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.079 4.079 7 H 0.078 0.922 8 C -0.121 4.121 9 C 0.158 3.842 10 N -0.747 5.747 11 C -0.330 4.330 12 H 0.064 0.936 13 C -0.048 4.048 14 N -0.947 5.947 15 Si 1.083 2.917 16 H -0.296 1.296 17 H -0.288 1.288 18 H -0.295 1.295 19 C 0.059 3.941 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.023 0.977 23 H 0.030 0.970 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.366 0.634 34 H 0.254 0.746 35 H 0.032 0.968 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.906 13.753 10.854 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.098 4.098 7 H 0.097 0.903 8 C -0.160 4.160 9 C 0.031 3.969 10 N -0.392 5.392 11 C -0.461 4.461 12 H 0.082 0.918 13 C -0.245 4.245 14 N -0.593 5.593 15 Si 0.914 3.086 16 H -0.224 1.224 17 H -0.214 1.214 18 H -0.222 1.222 19 C -0.068 4.068 20 H 0.088 0.912 21 H 0.083 0.917 22 H 0.041 0.959 23 H 0.048 0.952 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.199 0.801 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.687 12.063 10.496 16.972 hybrid contribution -0.426 1.899 0.039 1.947 sum -6.113 13.963 10.535 18.529 Atomic orbital electron populations 1.22342 0.87513 1.02362 1.00079 1.61928 1.07368 1.13456 1.44166 1.22091 0.95835 0.89382 0.99997 1.21582 0.94320 0.99881 0.99618 1.21651 1.00038 0.95624 0.98130 1.21115 0.93773 0.95391 0.99510 0.90339 1.21772 1.00637 0.96381 0.97200 1.20635 0.96000 0.89241 0.91051 1.42416 1.59911 1.09408 1.27470 1.20092 1.28422 0.87352 1.10219 0.91780 1.25787 0.98700 1.06132 0.93882 1.70843 1.38453 1.12570 1.37402 0.83186 0.75820 0.74483 0.75063 1.22354 1.21378 1.22154 1.22242 0.95566 0.98399 0.90599 0.91209 0.91652 0.95872 0.95203 0.91158 0.91797 0.91134 0.91697 0.92386 0.91839 0.92312 0.96300 0.96347 0.80134 0.93430 0.95013 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.59 60.07 0.58 0.85 16 2 N -0.54 -6.82 4.91 -242.95 -1.19 -8.02 16 3 C 0.05 0.59 5.47 -3.83 -0.02 0.57 16 4 C -0.12 -1.22 6.09 -26.64 -0.16 -1.38 16 5 C -0.12 -1.40 5.29 -26.60 -0.14 -1.54 16 6 C -0.08 -1.11 2.35 -90.54 -0.21 -1.33 16 7 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 8 C -0.12 -2.07 4.80 -26.73 -0.13 -2.19 16 9 C 0.16 3.38 6.02 -4.04 -0.02 3.36 16 10 N -0.75 -19.90 5.60 -59.91 -0.34 -20.23 16 11 C -0.33 -9.75 9.99 -15.06 -0.15 -9.90 16 12 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 13 C -0.05 -1.44 5.50 -17.43 -0.10 -1.54 16 14 N -0.95 -30.17 13.70 55.49 0.76 -29.41 16 15 Si 1.08 26.69 29.92 -169.99 -5.09 21.60 16 16 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 C 0.06 0.83 4.48 -3.84 -0.02 0.82 16 20 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 21 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 22 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.02 0.41 6.59 -51.93 -0.34 0.07 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.37 9.89 6.50 -40.82 -0.27 9.62 16 34 H 0.25 8.00 6.77 -40.82 -0.28 7.72 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 1.24 6.59 -51.93 -0.34 0.90 16 LS Contribution 283.19 15.07 4.27 4.27 Total: -1.00 -32.28 283.19 -8.31 -40.59 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.35 Total: 3.49 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -0.38 Total: -12.29 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.77 Total: -57.66 kcal Atomic # 14 Polarization: 26.69 SS G_CDS: -5.09 Total: 21.60 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.28 -8.31 -40.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258790147.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.096 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds