Wall clock time and date at job start Mon Mar 30 2020 02:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00086 * 2 1 4 4 C 1.52997 * 109.47515 * 293.95813 * 3 2 1 5 5 C 1.50701 * 109.47212 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 C 1.46900 * 111.00277 * 123.95867 * 2 1 3 14 14 H 1.08994 * 110.28715 * 293.92079 * 13 2 1 15 15 C 1.54269 * 110.32277 * 56.04590 * 13 2 1 16 16 C 1.54376 * 105.06172 * 118.89694 * 15 13 2 17 17 N 1.48561 * 104.59422 * 23.85441 * 16 15 13 18 18 C 1.46905 * 110.99694 * 200.96337 * 17 16 15 19 19 C 1.48563 * 104.22051 * 320.51188 * 17 16 15 20 20 H 1.08994 * 109.47768 * 59.99563 * 1 2 3 21 21 H 1.09001 * 109.47114 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46895 * 299.99681 * 1 2 3 23 23 H 1.09002 * 109.47104 * 173.95545 * 3 2 1 24 24 H 1.08998 * 109.46828 * 53.96377 * 3 2 1 25 25 H 1.09002 * 109.47153 * 59.99762 * 4 3 2 26 26 H 1.09001 * 109.46832 * 299.99953 * 4 3 2 27 27 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 28 28 H 1.09002 * 110.32206 * 237.79460 * 15 13 2 29 29 H 1.08999 * 110.32137 * 359.89427 * 15 13 2 30 30 H 1.09002 * 110.41088 * 142.62608 * 16 15 13 31 31 H 1.09000 * 110.40723 * 264.95417 * 16 15 13 32 32 H 1.08995 * 109.47530 * 59.87075 * 18 17 16 33 33 H 1.08997 * 109.46797 * 179.87366 * 18 17 16 34 34 H 1.08998 * 109.46938 * 299.86711 * 18 17 16 35 35 H 1.08998 * 110.41857 * 280.71028 * 19 17 16 36 36 H 1.09004 * 110.40730 * 158.26187 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1710 3.4646 -1.3178 6 1 2.7191 3.8326 -0.4631 7 6 1.9657 4.2819 -2.4092 8 7 1.2987 3.8336 -3.4502 9 14 2.6352 6.0258 -2.4090 10 1 4.0072 6.0293 -2.9771 11 1 1.7560 6.8936 -3.2332 12 1 2.6745 6.5408 -1.0168 13 6 1.9955 -0.7661 1.1375 14 1 1.7439 -0.2710 2.0754 15 6 1.4332 -2.2025 1.1223 16 6 2.6702 -3.1161 0.9868 17 7 3.7957 -2.3032 1.5154 18 6 5.0847 -2.8025 1.0182 19 6 3.5249 -0.9327 1.0098 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 3.0797 1.3443 0.1082 24 1 1.5612 1.9272 0.8310 25 1 0.5471 2.0845 -1.4264 26 1 2.0657 1.5016 -2.1491 27 1 1.1540 4.4087 -4.2178 28 1 0.9072 -2.4131 2.0535 29 1 0.7651 -2.3385 0.2718 30 1 2.5421 -4.0203 1.5820 31 1 2.8415 -3.3713 -0.0590 32 1 5.0976 -2.7543 -0.0706 33 1 5.8911 -2.1882 1.4187 34 1 5.2219 -3.8355 1.3379 35 1 3.8312 -0.8445 -0.0325 36 1 4.0403 -0.1929 1.6224 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258907228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:21 Heat of formation + Delta-G solvation = 6.749872 kcal Electronic energy + Delta-G solvation = -14512.459253 eV Core-core repulsion = 12224.439024 eV Total energy + Delta-G solvation = -2288.020229 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.20100 -36.21195 -33.10743 -31.34662 -29.19938 -28.74655 -25.52488 -25.31350 -23.32572 -21.07249 -20.21271 -19.41179 -16.61737 -15.99018 -15.66675 -14.77026 -14.48152 -14.05110 -13.76767 -13.41162 -13.21253 -12.75738 -12.29236 -12.15111 -11.54616 -11.45749 -11.16757 -11.10919 -11.04608 -10.95603 -10.71771 -10.55033 -10.49004 -9.80286 -9.34005 -9.10618 -8.46714 -8.32401 -7.71244 -5.98943 -4.01231 3.32521 3.38618 3.41907 4.02120 4.44237 4.65087 4.78773 4.82248 5.20367 5.36929 5.37250 5.48237 5.53529 5.64437 5.78455 5.82510 5.84292 5.97116 5.99422 6.09190 6.13702 6.20923 6.29072 6.50964 6.53712 6.82812 6.97565 7.04690 7.52059 7.60974 7.81857 7.91090 8.09163 8.44737 9.06114 9.62375 11.12495 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044504 B = 0.006427 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.007909 B = 4355.465182 C = 4719.157363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.538 5.538 3 C 0.062 3.938 4 C 0.028 3.972 5 C -0.522 4.522 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.078 3.922 14 H 0.044 0.956 15 C -0.121 4.121 16 C 0.035 3.965 17 N -0.520 5.520 18 C 0.014 3.986 19 C 0.041 3.959 20 H 0.078 0.922 21 H 0.059 0.941 22 H 0.018 0.982 23 H 0.060 0.940 24 H 0.020 0.980 25 H 0.017 0.983 26 H 0.023 0.977 27 H 0.260 0.740 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.030 0.970 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.049 -12.079 8.312 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.262 5.262 3 C -0.065 4.065 4 C -0.009 4.009 5 C -0.560 4.560 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.031 4.031 14 H 0.062 0.938 15 C -0.159 4.159 16 C -0.093 4.093 17 N -0.244 5.244 18 C -0.135 4.135 19 C -0.088 4.088 20 H 0.097 0.903 21 H 0.078 0.922 22 H 0.036 0.964 23 H 0.079 0.921 24 H 0.038 0.962 25 H 0.035 0.965 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.189 -12.276 8.298 14.978 hybrid contribution 0.110 1.444 -0.249 1.469 sum 2.298 -10.832 8.049 13.690 Atomic orbital electron populations 1.22414 0.87996 1.00723 1.01273 1.62251 1.07596 1.15993 1.40408 1.22362 0.98629 0.85130 1.00390 1.19092 0.96922 0.94002 0.90903 1.21202 1.35103 0.97827 1.01915 0.92821 1.24990 0.95289 0.98455 0.95567 1.69973 1.40835 1.36453 1.06036 0.86601 0.78855 0.84606 0.77972 1.20648 1.21223 1.19921 1.22304 0.94041 0.93962 0.92810 0.93789 1.22465 0.97311 0.93964 1.02192 1.23063 0.91106 0.96796 0.98311 1.65383 1.01957 1.02755 1.54266 1.22484 0.92189 1.00686 0.98112 1.23165 0.95485 0.90431 0.99671 0.90332 0.92234 0.96378 0.92109 0.96210 0.96455 0.95848 0.93015 0.91489 0.90008 0.90635 0.93604 0.95132 0.91374 0.91623 0.92043 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.01 60.06 0.54 0.95 16 2 N -0.54 -9.94 4.56 -233.23 -1.06 -11.01 16 3 C 0.06 1.33 4.78 -3.83 -0.02 1.31 16 4 C 0.03 0.74 4.90 -27.88 -0.14 0.60 16 5 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 6 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.08 1.23 2.79 -66.33 -0.19 1.04 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 15 C -0.12 -1.59 6.10 -25.35 -0.15 -1.74 16 16 C 0.04 0.44 6.49 -2.18 -0.01 0.42 16 17 N -0.52 -7.01 5.66 -238.23 -1.35 -8.36 16 18 C 0.01 0.16 9.53 60.07 0.57 0.73 16 19 C 0.04 0.62 4.85 -2.18 -0.01 0.61 16 20 H 0.08 1.48 6.47 -51.93 -0.34 1.14 16 21 H 0.06 0.85 5.99 -51.93 -0.31 0.54 16 22 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.06 1.29 6.96 -51.93 -0.36 0.93 16 24 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 25 H 0.02 0.48 6.55 -51.93 -0.34 0.14 16 26 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.08 6.16 -51.93 -0.32 0.76 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.58 7.97 -51.93 -0.41 0.16 16 32 H 0.03 0.35 7.98 -51.93 -0.41 -0.06 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.03 7.79 -51.93 -0.40 0.63 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 282.56 15.07 4.26 4.26 Total: -1.00 -30.08 282.56 -8.50 -38.58 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -6.25 Total: -4.19 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 0.18 Total: -9.71 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -1.68 Total: -45.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.08 -8.50 -38.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258907228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.328 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds