Wall clock time and date at job start Mon Mar 30 2020 02:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00132 * 2 1 4 4 H 1.48494 * 109.47016 * 239.99606 * 3 2 1 5 5 H 1.48493 * 109.47192 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46947 * 119.99915 * 3 2 1 7 7 C 1.37880 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00155 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99869 * 0.02562 * 7 2 1 10 10 O 1.42102 * 106.39903 * 66.46190 * 9 7 2 11 11 O 1.42090 * 106.40110 * 293.54102 * 9 7 2 12 12 C 1.76203 * 107.21699 * 179.97438 * 9 7 2 13 13 C 1.38654 * 120.78365 * 90.00164 * 12 9 7 14 14 C 1.38209 * 119.15786 * 180.02562 * 13 12 9 15 15 N 1.31870 * 120.76375 * 0.26353 * 14 13 12 16 16 C 1.31872 * 121.72489 * 359.46946 * 15 14 13 17 17 C 1.38200 * 120.76402 * 0.52682 * 16 15 14 18 18 H 0.97000 * 119.99784 * 359.97438 * 1 2 3 19 19 H 1.07995 * 120.42251 * 0.04485 * 13 12 9 20 20 H 1.08002 * 119.61346 * 179.97438 * 14 13 12 21 21 H 1.08004 * 119.61160 * 180.27376 * 16 15 14 22 22 H 1.08003 * 120.41583 * 179.72635 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2495 11 8 0.4509 -2.7950 1.2499 12 6 2.3203 -4.0133 0.0005 13 6 2.8023 -4.5341 1.1917 14 6 3.7411 -5.5477 1.1525 15 7 4.1814 -6.0150 0.0007 16 6 3.7417 -5.5472 -1.1512 17 6 2.8029 -4.5337 -1.1904 18 1 -0.4850 0.8401 0.0004 19 1 2.4484 -4.1528 2.1381 20 1 4.1218 -5.9585 2.0759 21 1 4.1226 -5.9581 -2.0745 22 1 2.4500 -4.1517 -2.1370 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258962883.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:49 Heat of formation + Delta-G solvation = -80.775647 kcal Electronic energy + Delta-G solvation = -11926.853256 eV Core-core repulsion = 9572.572561 eV Total energy + Delta-G solvation = -2354.280695 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.03142 -37.47622 -36.21139 -35.23931 -33.70261 -32.30261 -28.32531 -25.08606 -24.55631 -20.92261 -19.55464 -18.53358 -17.49899 -17.22249 -16.62550 -15.93174 -15.75972 -15.67063 -14.97141 -14.66222 -14.00102 -13.38396 -13.01046 -12.87626 -12.54619 -12.45632 -12.31485 -12.12406 -11.42916 -11.25408 -10.94240 -10.55372 -10.24098 -8.80684 -7.55825 -0.37155 0.03666 0.04169 1.35592 1.37465 1.51208 2.19561 2.54710 2.60298 3.30203 3.44699 3.59521 3.69455 3.96978 4.04639 4.44961 4.54714 4.58677 4.77067 5.03684 5.21428 5.58942 5.81291 6.71571 6.75372 8.17206 Molecular weight = 213.02amu Principal moments of inertia in cm(-1) A = 0.045696 B = 0.010981 C = 0.010338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.592154 B = 2549.138801 C = 2707.680616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.072 3.928 3 Si 0.994 3.006 4 H -0.249 1.249 5 H -0.261 1.261 6 H -0.249 1.249 7 C -1.021 5.021 8 H 0.121 0.879 9 S 2.596 3.404 10 O -1.017 7.017 11 O -1.016 7.016 12 C -0.614 4.614 13 C -0.095 4.095 14 C 0.085 3.915 15 N -0.468 5.468 16 C 0.085 3.915 17 C -0.095 4.095 18 H 0.302 0.698 19 H 0.156 0.844 20 H 0.203 0.797 21 H 0.203 0.797 22 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.459 -4.994 0.002 9.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.142 4.142 3 Si 0.811 3.189 4 H -0.173 1.173 5 H -0.185 1.185 6 H -0.173 1.173 7 C -1.155 5.155 8 H 0.139 0.861 9 S 2.783 3.217 10 O -1.014 7.014 11 O -1.014 7.014 12 C -0.708 4.708 13 C -0.116 4.116 14 C -0.072 4.072 15 N -0.176 5.176 16 C -0.072 4.072 17 C -0.116 4.116 18 H 0.112 0.888 19 H 0.174 0.826 20 H 0.220 0.780 21 H 0.220 0.780 22 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.003 -5.778 0.002 9.871 hybrid contribution -0.012 1.417 0.001 1.417 sum 7.991 -4.361 0.002 9.103 Atomic orbital electron populations 1.69976 1.08699 1.32711 1.40473 1.26048 0.95479 1.05223 0.87434 0.85111 0.78768 0.74155 0.80867 1.17295 1.18531 1.17309 1.30387 1.06850 1.10534 1.67704 0.86059 1.00764 0.73828 0.74779 0.72281 1.93294 1.73966 1.88409 1.45694 1.93292 1.73916 1.88408 1.45740 1.31565 1.19241 1.19213 1.00741 1.22236 0.95441 0.96047 0.97859 1.23448 0.93116 0.92914 0.97716 1.67796 1.24140 1.26467 0.99217 1.23447 0.93119 0.92914 0.97714 1.22231 0.95428 0.96049 0.97863 0.88776 0.82614 0.78045 0.78043 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.47 13.19 21.45 0.28 -51.19 14 2 C 0.07 3.87 5.46 84.66 0.46 4.33 14 3 Si 0.99 39.79 29.54 68.60 2.03 41.82 14 4 H -0.25 -9.38 7.11 99.48 0.71 -8.67 14 5 H -0.26 -9.79 7.11 99.48 0.71 -9.08 14 6 H -0.25 -9.38 7.11 99.48 0.71 -8.68 14 7 C -1.02 -54.80 9.58 67.73 0.65 -54.15 14 8 H 0.12 5.85 7.81 -2.91 -0.02 5.83 14 9 S 2.60 137.49 4.68 -56.49 -0.26 137.22 14 10 O -1.02 -59.01 17.26 -128.00 -2.21 -61.22 14 11 O -1.02 -59.00 17.27 -128.00 -2.21 -61.21 14 12 C -0.61 -25.29 5.85 22.47 0.13 -25.15 14 13 C -0.10 -3.36 9.61 22.36 0.21 -3.14 14 14 C 0.09 2.42 11.18 84.68 0.95 3.37 14 15 N -0.47 -13.75 10.36 -195.84 -2.03 -15.78 14 16 C 0.09 2.42 11.18 84.68 0.95 3.37 14 17 C -0.10 -3.35 9.61 22.36 0.21 -3.14 14 18 H 0.30 15.65 8.31 -92.71 -0.77 14.88 14 19 H 0.16 5.20 7.72 -2.91 -0.02 5.18 14 20 H 0.20 3.86 8.06 -2.91 -0.02 3.83 14 21 H 0.20 3.86 8.06 -2.91 -0.02 3.83 14 22 H 0.16 5.21 7.72 -2.91 -0.02 5.18 14 Total: -1.00 -72.95 223.78 0.40 -72.55 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 1.24 Total: 12.31 kcal Atomic # 6 Polarization: -78.08 SS G_CDS: 3.57 Total: -74.51 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -1.75 Total: -66.97 kcal Atomic # 8 Polarization: -118.01 SS G_CDS: -4.42 Total: -122.43 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Atomic # 16 Polarization: 137.49 SS G_CDS: -0.26 Total: 137.22 kcal Total: -72.95 0.40 -72.55 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258962883.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.225 kcal (2) G-P(sol) polarization free energy of solvation -72.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds