Wall clock time and date at job start Mon Mar 30 2020 02:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46845 * 110.99970 * 2 1 4 4 C 1.53029 * 109.52197 * 174.15942 * 3 2 1 5 5 C 1.53121 * 109.28262 * 59.17805 * 4 3 2 6 6 C 1.53124 * 109.15856 * 302.34610 * 5 4 3 7 7 H 1.09000 * 109.53290 * 297.69293 * 6 5 4 8 8 C 1.52997 * 109.49995 * 177.59155 * 6 5 4 9 9 H 1.09000 * 109.47175 * 300.19596 * 8 6 5 10 10 N 1.46901 * 109.47202 * 60.19874 * 8 6 5 11 11 C 1.53006 * 109.46646 * 180.19621 * 8 6 5 12 12 C 1.50699 * 109.46866 * 175.00111 * 11 8 6 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 8 14 14 C 1.37874 * 120.00270 * 180.02562 * 12 11 8 15 15 N 1.31522 * 119.99834 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00496 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47325 * 59.99531 * 16 14 12 18 18 H 1.48496 * 109.47425 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47183 * 299.99726 * 16 14 12 20 20 C 1.46842 * 110.99964 * 235.78523 * 2 1 3 21 21 H 1.09004 * 109.47413 * 184.21087 * 1 2 3 22 22 H 1.09001 * 109.47433 * 304.20882 * 1 2 3 23 23 H 1.09000 * 109.47000 * 64.21538 * 1 2 3 24 24 H 1.08998 * 109.46074 * 294.17310 * 3 2 1 25 25 H 1.09005 * 109.46070 * 54.14026 * 3 2 1 26 26 H 1.09007 * 109.50416 * 179.11777 * 4 3 2 27 27 H 1.09004 * 109.50617 * 299.19276 * 4 3 2 28 28 H 1.08993 * 109.52547 * 182.43790 * 5 4 3 29 29 H 1.09000 * 109.52265 * 62.24677 * 5 4 3 30 30 H 1.00893 * 110.99780 * 296.04305 * 10 8 6 31 31 H 1.00906 * 110.99754 * 59.99629 * 10 8 6 32 32 H 1.08993 * 109.46955 * 295.00330 * 11 8 6 33 33 H 1.09000 * 109.47050 * 55.00158 * 11 8 6 34 34 H 0.96992 * 120.00032 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.46008 * 65.82814 * 20 2 1 36 36 H 1.08999 * 109.46594 * 305.85986 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1188 0.5369 -1.0143 6 6 3.5181 -0.8716 -1.0207 7 1 3.7813 -1.3843 -0.0955 8 6 4.0681 -1.6559 -2.2137 9 1 3.8058 -1.1420 -3.1385 10 7 5.5299 -1.7522 -2.1046 11 6 3.4636 -3.0615 -2.2222 12 6 3.9088 -3.7922 -3.4627 13 1 4.5576 -3.3029 -4.1741 14 6 3.4871 -5.0850 -3.6901 15 7 2.6966 -5.6807 -2.8240 16 14 4.0394 -5.9910 -5.2274 17 1 5.5210 -6.0899 -5.2383 18 1 3.4527 -7.3552 -5.2357 19 1 3.5840 -5.2485 -6.4301 20 6 1.9952 -0.7708 -1.1336 21 1 -0.3634 -1.0249 0.0755 22 1 -0.3634 0.5778 0.8499 23 1 -0.3633 0.4470 -0.9254 24 1 1.7325 1.8608 -0.9376 25 1 1.5633 1.9257 0.8330 26 1 3.9099 2.3512 0.1310 27 1 3.7813 0.8574 1.0910 28 1 5.1997 0.4714 -0.8904 29 1 3.8887 1.0353 -1.9560 30 1 5.9575 -0.8401 -2.1616 31 1 5.7987 -2.2251 -1.2547 32 1 3.7986 -3.6063 -1.3396 33 1 2.3761 -2.9894 -2.2135 34 1 2.4002 -6.5904 -2.9837 35 1 1.7325 -0.2709 -2.0659 36 1 1.5634 -1.7716 -1.1241 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259266563.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:11 Heat of formation + Delta-G solvation = -15.960622 kcal Electronic energy + Delta-G solvation = -14774.325055 eV Core-core repulsion = 12485.320025 eV Total energy + Delta-G solvation = -2289.005030 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.10469 -35.71617 -32.98512 -32.08157 -30.00423 -28.13338 -26.42895 -24.30476 -22.79932 -21.89443 -19.73467 -19.30882 -16.29855 -15.53707 -15.30430 -14.70802 -14.40267 -14.19792 -14.13551 -13.28006 -13.03790 -12.73646 -12.40530 -12.11742 -11.86846 -11.51767 -11.16024 -11.02560 -10.77319 -10.68281 -10.44545 -10.29103 -10.04055 -9.93526 -9.11680 -8.97498 -8.22530 -8.13477 -7.70925 -5.85677 -3.83485 3.43113 3.46511 3.50619 4.12498 4.58763 4.95917 5.02963 5.09156 5.30766 5.45792 5.49315 5.55533 5.57868 5.67784 5.73954 5.83366 5.93866 5.98569 6.05453 6.12113 6.18077 6.27143 6.38304 6.51752 6.82214 7.01483 7.27321 7.30449 7.63677 7.81202 8.09349 8.18002 8.30445 8.62845 9.22609 9.78003 11.26137 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041800 B = 0.007627 C = 0.006725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.691127 B = 3670.338384 C = 4162.566800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.117 4.117 7 H 0.071 0.929 8 C 0.102 3.898 9 H 0.063 0.937 10 N -0.826 5.826 11 C 0.030 3.970 12 C -0.493 4.493 13 H 0.059 0.941 14 C 0.049 3.951 15 N -0.904 5.904 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.280 1.280 20 C 0.064 3.936 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.022 0.978 24 H 0.028 0.972 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.318 0.682 31 H 0.333 0.667 32 H 0.014 0.986 33 H 0.021 0.979 34 H 0.258 0.742 35 H 0.029 0.971 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 13.340 5.750 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.072 4.072 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.138 4.138 7 H 0.090 0.910 8 C -0.010 4.010 9 H 0.082 0.918 10 N -0.353 5.353 11 C -0.007 4.007 12 C -0.531 4.531 13 H 0.078 0.922 14 C -0.150 4.150 15 N -0.545 5.545 16 Si 0.720 3.280 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.206 1.206 20 C -0.064 4.064 21 H 0.089 0.911 22 H 0.081 0.919 23 H 0.040 0.960 24 H 0.046 0.954 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.129 0.871 31 H 0.145 0.855 32 H 0.032 0.968 33 H 0.039 0.961 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.035 12.498 5.519 13.702 hybrid contribution -0.197 0.406 -0.671 0.808 sum -1.232 12.904 4.849 13.840 Atomic orbital electron populations 1.22330 0.87709 1.02396 0.99797 1.61953 1.07234 1.13099 1.44668 1.22059 0.95728 0.89696 0.99728 1.21558 0.94520 0.99579 0.99582 1.21675 0.99588 0.96379 0.97975 1.22136 0.94583 0.95416 1.01642 0.91022 1.21662 0.86694 0.98594 0.94008 0.91829 1.58841 1.08810 1.22991 1.44616 1.19183 0.95330 0.88777 0.97443 1.21169 1.28105 0.97905 1.05937 0.92248 1.25020 0.95598 0.97781 0.96591 1.69958 1.35420 1.13282 1.35814 0.86677 0.78918 0.78637 0.83810 1.20376 1.21648 1.20551 1.22207 0.95518 0.98636 0.90041 0.91108 0.91920 0.95988 0.95384 0.91430 0.92132 0.91373 0.92253 0.92509 0.87090 0.85506 0.96753 0.96050 0.93294 0.95244 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.59 60.07 0.58 0.91 16 2 N -0.55 -8.14 4.91 -242.96 -1.19 -9.34 16 3 C 0.06 0.72 5.46 -3.84 -0.02 0.69 16 4 C -0.11 -1.41 6.09 -26.65 -0.16 -1.57 16 5 C -0.12 -1.64 4.88 -26.60 -0.13 -1.77 16 6 C -0.12 -1.97 2.09 -90.54 -0.19 -2.16 16 7 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 8 C 0.10 2.06 2.34 -67.71 -0.16 1.91 16 9 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 10 N -0.83 -15.47 8.84 -4.66 -0.04 -15.51 16 11 C 0.03 0.76 4.41 -27.88 -0.12 0.64 16 12 C -0.49 -14.11 8.84 -34.44 -0.30 -14.41 16 13 H 0.06 1.71 7.74 -52.48 -0.41 1.30 16 14 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 15 N -0.90 -27.56 13.29 55.43 0.74 -26.83 16 16 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 20 C 0.06 1.09 4.38 -3.84 -0.02 1.07 16 21 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 23 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.76 6.91 -51.93 -0.36 0.40 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.32 4.98 7.46 -39.30 -0.29 4.69 16 31 H 0.33 6.04 9.00 -39.29 -0.35 5.69 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.57 6.20 -51.93 -0.32 0.25 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.09 1.72 6.35 -51.93 -0.33 1.39 16 LS Contribution 281.00 15.07 4.23 4.23 Total: -1.00 -30.45 281.00 -8.18 -38.62 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.27 Total: 4.75 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.63 Total: -13.34 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.50 Total: -51.67 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.45 -8.18 -38.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259266563.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.663 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds