Wall clock time and date at job start Mon Mar 30 2020 02:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46903 * 110.99477 * 2 1 4 4 H 1.09000 * 109.46895 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46941 * 60.00607 * 3 2 1 6 6 C 1.50699 * 109.47373 * 64.99574 * 5 3 2 7 7 H 1.07995 * 119.99930 * 0.02562 * 6 5 3 8 8 C 1.37873 * 119.99959 * 179.97438 * 6 5 3 9 9 N 1.31520 * 120.00226 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 120.00054 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47437 * 60.00492 * 10 8 6 12 12 H 1.48499 * 109.47676 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47220 * 300.00339 * 10 8 6 14 14 C 1.53001 * 109.47388 * 300.00433 * 3 2 1 15 15 H 1.08991 * 110.29174 * 62.12574 * 14 3 2 16 16 C 1.54259 * 110.32029 * 299.99908 * 14 3 2 17 17 C 1.54387 * 105.06271 * 241.00367 * 16 14 3 18 18 N 1.48559 * 104.58955 * 336.15098 * 17 16 14 19 19 C 1.46904 * 111.00066 * 159.04379 * 18 17 16 20 20 C 1.48560 * 104.22567 * 39.48140 * 18 17 16 21 21 H 1.08994 * 109.47228 * 59.99504 * 1 2 3 22 22 H 1.08997 * 109.46665 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47051 * 299.99766 * 1 2 3 24 24 H 1.00893 * 111.00106 * 123.95619 * 2 1 3 25 25 H 1.09001 * 109.46785 * 184.99669 * 5 3 2 26 26 H 1.09002 * 109.46650 * 304.99358 * 5 3 2 27 27 H 0.96994 * 120.00187 * 179.97438 * 9 8 6 28 28 H 1.09000 * 110.32330 * 122.10953 * 16 14 3 29 29 H 1.09003 * 110.41347 * 359.94295 * 16 14 3 30 30 H 1.08999 * 110.41133 * 94.92454 * 17 16 14 31 31 H 1.08999 * 110.41276 * 217.37423 * 17 16 14 32 32 H 1.08999 * 109.47164 * 59.86869 * 19 18 17 33 33 H 1.08991 * 109.47486 * 179.87271 * 19 18 17 34 34 H 1.09009 * 109.46450 * 299.87269 * 19 18 17 35 35 H 1.09004 * 110.40940 * 201.73469 * 20 18 17 36 36 H 1.08995 * 110.40669 * 79.29476 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 3.0850 1.3425 0.0005 5 6 1.5048 2.1060 1.2494 6 6 2.0886 1.4548 2.4766 7 1 2.7443 0.6027 2.3756 8 6 1.7865 1.9477 3.7283 9 7 0.9884 2.9858 3.8513 10 14 2.5095 1.1402 5.2496 11 1 3.9918 1.2044 5.1871 12 1 2.0335 1.8531 6.4622 13 1 2.0777 -0.2794 5.3091 14 6 1.5047 2.1062 -1.2492 15 1 0.4170 2.1759 -1.2439 16 6 1.9889 1.3812 -2.5218 17 6 2.8680 2.4127 -3.2612 18 7 2.3878 3.7314 -2.7738 19 6 3.4056 4.7708 -2.9787 20 6 2.1320 3.5146 -1.3266 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8307 -0.5261 0.7813 25 1 1.8211 3.1482 1.2057 26 1 0.4168 2.0580 1.2952 27 1 0.7755 3.3323 4.7319 28 1 1.1388 1.0952 -3.1412 29 1 2.5772 0.5023 -2.2582 30 1 3.9177 2.2716 -3.0039 31 1 2.7254 2.3308 -4.3388 32 1 3.6342 4.8510 -4.0414 33 1 3.0274 5.7262 -2.6153 34 1 4.3103 4.5062 -2.4313 35 1 1.4354 4.2624 -0.9475 36 1 3.0665 3.5459 -0.7666 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259289228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:35 Heat of formation + Delta-G solvation = -4.024923 kcal Electronic energy + Delta-G solvation = -14884.637497 eV Core-core repulsion = 12596.150038 eV Total energy + Delta-G solvation = -2288.487459 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.00345 -36.14375 -32.67740 -31.49226 -29.57109 -27.76553 -25.83647 -24.74170 -23.39983 -21.05736 -20.51635 -18.53998 -16.47271 -15.70468 -15.23247 -14.94922 -14.51742 -13.95851 -13.69662 -13.18168 -12.99798 -12.47203 -12.11656 -11.87505 -11.27500 -11.26265 -11.17224 -11.11230 -11.03508 -10.88779 -10.48818 -10.43616 -10.14739 -9.77460 -9.56867 -9.01126 -8.41347 -8.26174 -7.43460 -6.05655 -4.09058 3.28449 3.33657 3.35562 4.32508 4.40531 4.96740 5.10866 5.28678 5.37865 5.40926 5.56174 5.63928 5.69301 5.90203 5.96360 6.05385 6.07205 6.20152 6.24716 6.35181 6.42591 6.44510 6.63806 6.66349 6.84663 6.96063 7.14683 7.26228 7.46846 7.67103 7.85902 8.02293 8.24454 8.37019 8.97769 9.55481 11.05096 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035889 B = 0.008352 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.985711 B = 3351.765708 C = 3782.016908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.684 5.684 3 C 0.095 3.905 4 H 0.064 0.936 5 C -0.008 4.008 6 C -0.523 4.523 7 H 0.053 0.947 8 C 0.060 3.940 9 N -0.892 5.892 10 Si 0.890 3.110 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C -0.081 4.081 15 H 0.072 0.928 16 C -0.109 4.109 17 C 0.029 3.971 18 N -0.521 5.521 19 C 0.014 3.986 20 C 0.042 3.958 21 H 0.053 0.947 22 H 0.048 0.952 23 H 0.038 0.962 24 H 0.343 0.657 25 H 0.019 0.981 26 H 0.022 0.978 27 H 0.261 0.739 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.079 0.921 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 -1.044 -10.795 11.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.313 5.313 3 C -0.016 4.016 4 H 0.083 0.917 5 C -0.046 4.046 6 C -0.561 4.561 7 H 0.072 0.928 8 C -0.142 4.142 9 N -0.531 5.531 10 Si 0.718 3.282 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.100 4.100 15 H 0.090 0.910 16 C -0.147 4.147 17 C -0.099 4.099 18 N -0.245 5.245 19 C -0.135 4.135 20 C -0.086 4.086 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.056 0.944 24 H 0.161 0.839 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.097 0.903 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.809 -0.808 -11.639 11.807 hybrid contribution 0.928 -0.203 2.371 2.554 sum 2.737 -1.011 -9.269 9.717 Atomic orbital electron populations 1.22153 0.89724 1.00049 1.00705 1.60819 1.07144 1.14389 1.48985 1.21709 0.98034 0.87975 0.93840 0.91736 1.19765 0.97082 0.96237 0.91507 1.21137 1.29027 1.14783 0.91197 0.92842 1.24998 0.95118 0.94985 0.99084 1.69954 1.35728 1.23800 1.23607 0.86692 0.79507 0.79524 0.82481 1.20286 1.21321 1.20249 1.21916 1.00223 0.93102 0.94797 0.90960 1.22246 0.99049 0.97674 0.95713 1.23162 0.97346 0.89705 0.99656 1.65379 1.39099 1.05177 1.14851 1.22472 0.93640 0.96248 1.01099 1.23150 1.00239 0.97773 0.87467 0.92775 0.93294 0.94371 0.83914 0.96257 0.96016 0.92937 0.92144 0.90273 0.94271 0.90980 0.91863 0.91479 0.95487 0.90271 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.93 60.07 0.60 1.02 16 2 N -0.68 -12.91 6.16 -114.00 -0.70 -13.61 16 3 C 0.09 1.90 1.77 -67.71 -0.12 1.78 16 4 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 5 C -0.01 -0.19 4.13 -27.88 -0.12 -0.31 16 6 C -0.52 -14.18 8.55 -34.44 -0.29 -14.47 16 7 H 0.05 1.41 7.15 -52.49 -0.38 1.03 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 10 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 C -0.08 -1.43 2.16 -89.24 -0.19 -1.63 16 15 H 0.07 1.34 6.57 -51.93 -0.34 1.00 16 16 C -0.11 -1.67 6.38 -25.35 -0.16 -1.83 16 17 C 0.03 0.42 6.49 -2.18 -0.01 0.40 16 18 N -0.52 -8.03 5.66 -238.23 -1.35 -9.38 16 19 C 0.01 0.19 9.53 60.07 0.57 0.76 16 20 C 0.04 0.72 4.98 -2.18 -0.01 0.71 16 21 H 0.05 0.92 6.36 -51.93 -0.33 0.59 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.04 0.79 6.20 -51.93 -0.32 0.47 16 24 H 0.34 6.76 7.73 -39.30 -0.30 6.46 16 25 H 0.02 0.51 7.24 -51.93 -0.38 0.14 16 26 H 0.02 0.58 6.15 -51.93 -0.32 0.26 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.25 7.44 -51.93 -0.39 0.86 16 30 H 0.04 0.55 7.97 -51.93 -0.41 0.13 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.03 0.35 7.97 -51.92 -0.41 -0.07 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.05 0.89 7.59 -51.93 -0.39 0.49 16 LS Contribution 278.98 15.07 4.20 4.20 Total: -1.00 -28.48 278.98 -8.04 -36.52 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.07 Total: 3.53 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 0.16 Total: -11.98 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -1.31 Total: -48.61 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.48 -8.04 -36.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259289228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.493 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds