Wall clock time and date at job start Mon Mar 30 2020 02:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46903 * 110.99477 * 2 1 4 4 H 1.09000 * 109.46895 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46941 * 60.00607 * 3 2 1 6 6 C 1.50699 * 109.47373 * 64.99574 * 5 3 2 7 7 H 1.07995 * 119.99930 * 0.02562 * 6 5 3 8 8 C 1.37873 * 119.99959 * 179.97438 * 6 5 3 9 9 N 1.31520 * 120.00226 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 120.00054 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47437 * 60.00492 * 10 8 6 12 12 H 1.48499 * 109.47676 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47220 * 300.00339 * 10 8 6 14 14 C 1.53001 * 109.47388 * 300.00433 * 3 2 1 15 15 H 1.08991 * 110.29174 * 62.12574 * 14 3 2 16 16 C 1.54259 * 110.32029 * 299.99908 * 14 3 2 17 17 C 1.54387 * 105.06271 * 241.00367 * 16 14 3 18 18 N 1.48559 * 104.58955 * 336.15098 * 17 16 14 19 19 C 1.46904 * 111.00066 * 159.04379 * 18 17 16 20 20 C 1.48560 * 104.22567 * 39.48140 * 18 17 16 21 21 H 1.08994 * 109.47228 * 59.99504 * 1 2 3 22 22 H 1.08997 * 109.46665 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47051 * 299.99766 * 1 2 3 24 24 H 1.00893 * 111.00106 * 123.95619 * 2 1 3 25 25 H 1.09001 * 109.46785 * 184.99669 * 5 3 2 26 26 H 1.09002 * 109.46650 * 304.99358 * 5 3 2 27 27 H 0.96994 * 120.00187 * 179.97438 * 9 8 6 28 28 H 1.09000 * 110.32330 * 122.10953 * 16 14 3 29 29 H 1.09003 * 110.41347 * 359.94295 * 16 14 3 30 30 H 1.08999 * 110.41133 * 94.92454 * 17 16 14 31 31 H 1.08999 * 110.41276 * 217.37423 * 17 16 14 32 32 H 1.08999 * 109.47164 * 59.86869 * 19 18 17 33 33 H 1.08991 * 109.47486 * 179.87271 * 19 18 17 34 34 H 1.09009 * 109.46450 * 299.87269 * 19 18 17 35 35 H 1.09004 * 110.40940 * 201.73469 * 20 18 17 36 36 H 1.08995 * 110.40669 * 79.29476 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 3.0850 1.3425 0.0005 5 6 1.5048 2.1060 1.2494 6 6 2.0886 1.4548 2.4766 7 1 2.7443 0.6027 2.3756 8 6 1.7865 1.9477 3.7283 9 7 0.9884 2.9858 3.8513 10 14 2.5095 1.1402 5.2496 11 1 3.9918 1.2044 5.1871 12 1 2.0335 1.8531 6.4622 13 1 2.0777 -0.2794 5.3091 14 6 1.5047 2.1062 -1.2492 15 1 0.4170 2.1759 -1.2439 16 6 1.9889 1.3812 -2.5218 17 6 2.8680 2.4127 -3.2612 18 7 2.3878 3.7314 -2.7738 19 6 3.4056 4.7708 -2.9787 20 6 2.1320 3.5146 -1.3266 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8307 -0.5261 0.7813 25 1 1.8211 3.1482 1.2057 26 1 0.4168 2.0580 1.2952 27 1 0.7755 3.3323 4.7319 28 1 1.1388 1.0952 -3.1412 29 1 2.5772 0.5023 -2.2582 30 1 3.9177 2.2716 -3.0039 31 1 2.7254 2.3308 -4.3388 32 1 3.6342 4.8510 -4.0414 33 1 3.0274 5.7262 -2.6153 34 1 4.3103 4.5062 -2.4313 35 1 1.4354 4.2624 -0.9475 36 1 3.0665 3.5459 -0.7666 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259289228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:34 Heat of formation + Delta-G solvation = -24.596513 kcal Electronic energy + Delta-G solvation = -14885.529548 eV Core-core repulsion = 12596.150038 eV Total energy + Delta-G solvation = -2289.379510 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.39116 -37.67588 -34.75306 -32.80178 -31.19598 -29.38732 -27.33556 -26.12407 -25.24808 -22.54549 -21.85347 -20.08159 -18.50830 -17.21184 -16.79423 -16.36347 -16.29053 -15.35068 -15.02375 -14.76207 -14.50787 -14.06616 -13.80761 -13.34328 -13.08347 -12.80354 -12.66398 -12.52550 -12.40663 -12.36202 -12.20949 -11.98767 -11.78827 -11.49033 -11.25722 -10.87372 -10.57322 -9.48040 -9.10115 -8.20978 -6.31632 1.37866 1.39495 1.47210 2.38138 3.11099 3.12177 3.52885 3.84228 3.99471 4.04614 4.38529 4.44158 4.53711 4.61825 4.63971 4.67650 4.77382 4.80739 4.85738 4.97290 4.97726 5.12437 5.15172 5.18485 5.34133 5.40378 5.42898 5.65708 5.79980 5.88044 6.08593 6.18801 6.32545 6.64556 6.85354 7.37418 8.90030 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035889 B = 0.008352 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.985711 B = 3351.765708 C = 3782.016908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.672 5.672 3 C 0.108 3.892 4 H 0.058 0.942 5 C 0.002 3.998 6 C -0.535 4.535 7 H 0.061 0.939 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.959 3.041 11 H -0.269 1.269 12 H -0.287 1.287 13 H -0.266 1.266 14 C -0.078 4.078 15 H 0.062 0.938 16 C -0.101 4.101 17 C 0.032 3.968 18 N -0.528 5.528 19 C 0.013 3.987 20 C 0.046 3.954 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.004 0.996 24 H 0.339 0.661 25 H -0.009 1.009 26 H -0.004 1.004 27 H 0.261 0.739 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.025 0.975 35 H 0.062 0.938 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 -2.212 -11.910 12.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.300 5.300 3 C -0.003 4.003 4 H 0.076 0.924 5 C -0.036 4.036 6 C -0.573 4.573 7 H 0.079 0.921 8 C -0.195 4.195 9 N -0.571 5.571 10 Si 0.784 3.216 11 H -0.194 1.194 12 H -0.213 1.213 13 H -0.191 1.191 14 C -0.098 4.098 15 H 0.080 0.920 16 C -0.139 4.139 17 C -0.096 4.096 18 N -0.252 5.252 19 C -0.136 4.136 20 C -0.083 4.083 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.023 0.977 24 H 0.156 0.844 25 H 0.009 0.991 26 H 0.014 0.986 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.659 -1.988 -12.776 13.200 hybrid contribution 0.644 0.186 2.686 2.769 sum 3.303 -1.803 -10.090 10.768 Atomic orbital electron populations 1.22156 0.88931 1.01395 0.99597 1.60869 1.07660 1.13111 1.48372 1.21494 0.97508 0.88350 0.92908 0.92353 1.19644 0.95320 0.95127 0.93544 1.21549 1.28739 1.14848 0.92137 0.92106 1.25900 0.95527 0.95543 1.02552 1.70097 1.37308 1.25437 1.24300 0.85590 0.78911 0.78799 0.78290 1.19415 1.21276 1.19102 1.21817 0.99531 0.93446 0.94967 0.91984 1.22182 0.99642 0.97639 0.94394 1.23218 0.97178 0.88385 1.00779 1.65380 1.40533 1.06439 1.12806 1.22556 0.92884 0.95499 1.02655 1.22992 0.99067 0.97181 0.89051 0.91656 0.90673 0.97746 0.84390 0.99085 0.98556 0.92989 0.90973 0.90367 0.93856 0.88576 0.89455 0.91380 0.95591 0.91903 0.94833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 9.93 127.69 1.27 2.29 16 2 N -0.67 -24.79 6.16 -514.59 -3.17 -27.96 16 3 C 0.11 4.37 1.77 44.92 0.08 4.45 16 4 H 0.06 2.44 8.10 -2.39 -0.02 2.42 16 5 C 0.00 0.10 4.13 29.85 0.12 0.23 16 6 C -0.53 -29.36 8.55 25.60 0.22 -29.14 16 7 H 0.06 3.18 7.15 -2.91 -0.02 3.16 16 8 C 0.00 0.16 5.46 84.65 0.46 0.62 16 9 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 10 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 12 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 14 C -0.08 -2.74 2.16 -9.90 -0.02 -2.76 16 15 H 0.06 2.31 6.57 -2.39 -0.02 2.29 16 16 C -0.10 -2.87 6.38 31.49 0.20 -2.67 16 17 C 0.03 0.82 6.49 86.45 0.56 1.38 16 18 N -0.53 -15.44 5.66 -907.61 -5.14 -20.58 16 19 C 0.01 0.30 9.53 127.69 1.22 1.52 16 20 C 0.05 1.60 4.98 86.45 0.43 2.03 16 21 H 0.06 2.15 6.36 -2.39 -0.02 2.13 16 22 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 23 H 0.00 0.17 6.20 -2.39 -0.01 0.15 16 24 H 0.34 13.05 7.73 -89.70 -0.69 12.35 16 25 H -0.01 -0.52 7.24 -2.39 -0.02 -0.54 16 26 H 0.00 -0.21 6.15 -2.39 -0.01 -0.23 16 27 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 2.27 7.44 -2.39 -0.02 2.25 16 30 H 0.04 1.09 7.97 -2.39 -0.02 1.07 16 31 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.03 0.63 7.97 -2.38 -0.02 0.61 16 35 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.03 1.26 7.59 -2.39 -0.02 1.24 16 Total: -1.00 -61.17 278.98 -1.10 -62.28 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.35 Total: 18.49 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 4.54 Total: -22.06 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -8.02 Total: -104.63 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -61.17 -1.10 -62.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259289228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.681 kcal (2) G-P(sol) polarization free energy of solvation -61.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds