Wall clock time and date at job start Mon Mar 30 2020 02:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46907 * 110.99970 * 2 1 4 4 H 1.09001 * 109.46897 * 358.11173 * 3 2 1 5 5 C 1.52998 * 109.47177 * 238.11152 * 3 2 1 6 6 C 1.50701 * 109.47016 * 62.11651 * 5 3 2 7 7 H 1.07997 * 120.00543 * 5.10791 * 6 5 3 8 8 C 1.37881 * 119.99722 * 185.10646 * 6 5 3 9 9 N 1.31516 * 119.99743 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00001 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46866 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47215 * 119.99699 * 10 8 6 13 13 H 1.48497 * 109.47043 * 239.99908 * 10 8 6 14 14 C 1.53003 * 109.46781 * 118.11119 * 3 2 1 15 15 H 1.08999 * 110.62341 * 183.47674 * 14 3 2 16 16 C 1.55143 * 110.70457 * 306.76608 * 14 3 2 17 17 C 1.54909 * 101.65110 * 154.04231 * 16 14 3 18 18 N 1.47849 * 104.79370 * 322.92765 * 17 16 14 19 19 C 1.46905 * 111.00056 * 146.36430 * 18 17 16 20 20 C 1.47446 * 108.56750 * 24.10032 * 18 17 16 21 21 H 1.09004 * 109.46899 * 67.42530 * 1 2 3 22 22 H 1.08998 * 109.47026 * 187.42350 * 1 2 3 23 23 H 1.09004 * 109.47195 * 307.42712 * 1 2 3 24 24 H 1.00898 * 110.99934 * 236.04790 * 2 1 3 25 25 H 1.08995 * 109.46952 * 182.12341 * 5 3 2 26 26 H 1.09008 * 109.46729 * 302.12104 * 5 3 2 27 27 H 0.97009 * 119.99360 * 180.02562 * 9 8 6 28 28 H 1.08998 * 110.99163 * 272.12595 * 16 14 3 29 29 H 1.08998 * 110.98977 * 35.94686 * 16 14 3 30 30 H 1.08998 * 110.37564 * 204.10419 * 17 16 14 31 31 H 1.09001 * 110.46970 * 81.80422 * 17 16 14 32 32 H 1.08999 * 109.47049 * 299.15811 * 19 18 17 33 33 H 1.08997 * 109.46954 * 59.15589 * 19 18 17 34 34 H 1.08995 * 109.47043 * 179.15914 * 19 18 17 35 35 H 1.09001 * 109.88932 * 239.60431 * 20 18 17 36 36 H 1.09000 * 109.89187 * 118.41208 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.1668 2.0788 -0.0339 5 6 2.8896 1.5746 -1.2248 6 6 2.0724 1.3965 -2.4784 7 1 1.0055 1.2440 -2.4104 8 6 2.6870 1.4285 -3.7122 9 7 3.9863 1.6148 -3.7950 10 14 1.6740 1.2086 -5.2662 11 1 0.2466 1.0183 -4.9037 12 1 1.8105 2.4152 -6.1210 13 1 2.1595 0.0180 -6.0092 14 6 2.8128 1.6040 1.2724 15 1 3.1617 2.6354 1.3215 16 6 1.9823 1.2413 2.5317 17 6 3.0954 0.8865 3.5489 18 7 4.1305 0.1959 2.7504 19 6 5.4747 0.4864 3.2667 20 6 4.0010 0.6220 1.3448 21 1 -0.3633 0.3945 -0.9490 22 1 -0.3633 -1.0190 0.1328 23 1 -0.3634 0.6246 0.8161 24 1 1.8306 -0.5261 -0.7814 25 1 3.3103 2.5799 -1.2048 26 1 3.6972 0.8424 -1.2104 27 1 4.4186 1.6376 -4.6632 28 1 1.3987 2.0959 2.8739 29 1 1.3391 0.3823 2.3411 30 1 2.7063 0.2227 4.3210 31 1 3.5039 1.7917 3.9982 32 1 5.6627 1.5585 3.2077 33 1 5.5429 0.1622 4.3051 34 1 6.2158 -0.0458 2.6705 35 1 3.8058 -0.2434 0.7114 36 1 4.9148 1.1213 1.0229 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259289232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:38 Heat of formation + Delta-G solvation = -4.207287 kcal Electronic energy + Delta-G solvation = -14893.279399 eV Core-core repulsion = 12604.784031 eV Total energy + Delta-G solvation = -2288.495367 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.89536 -35.91359 -32.70161 -31.48982 -29.83127 -27.74020 -25.73852 -24.55426 -23.06820 -21.29956 -20.49255 -18.65649 -16.45196 -15.80437 -15.05300 -14.84430 -14.16139 -14.12515 -13.39268 -13.23721 -12.87628 -12.33034 -12.11725 -12.03433 -11.42914 -11.33040 -11.17685 -11.05608 -10.97997 -10.84749 -10.55943 -10.43859 -10.18021 -9.90956 -9.22061 -9.04092 -8.44132 -7.93137 -7.46320 -6.06661 -4.10085 3.26165 3.34477 3.37417 4.39799 4.43370 5.08092 5.15762 5.25133 5.34018 5.46831 5.62628 5.73055 5.75106 5.95046 5.96036 6.03857 6.08551 6.17050 6.23029 6.32393 6.43496 6.54703 6.58179 6.74199 6.90407 6.99596 7.37736 7.47224 7.48358 7.61138 7.91564 8.06995 8.32165 8.34519 8.97304 9.55022 11.03953 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040810 B = 0.008238 C = 0.007236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.933360 B = 3398.097425 C = 3868.767213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.681 5.681 3 C 0.099 3.901 4 H 0.046 0.954 5 C 0.008 3.992 6 C -0.524 4.524 7 H 0.053 0.947 8 C 0.061 3.939 9 N -0.890 5.890 10 Si 0.889 3.111 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C -0.094 4.094 15 H 0.061 0.939 16 C -0.120 4.120 17 C 0.043 3.957 18 N -0.534 5.534 19 C 0.021 3.979 20 C 0.059 3.941 21 H 0.021 0.979 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.351 0.649 25 H 0.014 0.986 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.021 0.979 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 -1.256 11.057 11.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.312 5.312 3 C -0.011 4.011 4 H 0.064 0.936 5 C -0.030 4.030 6 C -0.563 4.563 7 H 0.072 0.928 8 C -0.141 4.141 9 N -0.529 5.529 10 Si 0.718 3.282 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.209 1.209 14 C -0.114 4.114 15 H 0.080 0.920 16 C -0.158 4.158 17 C -0.085 4.085 18 N -0.258 5.258 19 C -0.128 4.128 20 C -0.068 4.068 21 H 0.040 0.960 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.170 0.830 25 H 0.032 0.968 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.766 -1.857 11.646 11.925 hybrid contribution -0.450 1.196 -1.936 2.320 sum -2.216 -0.661 9.710 9.982 Atomic orbital electron populations 1.22160 0.89840 1.00285 0.99390 1.60514 1.06066 1.14532 1.50112 1.21500 0.96659 0.88866 0.94078 0.93553 1.19571 0.95206 0.97540 0.90653 1.21228 0.94040 1.49832 0.91162 0.92833 1.24999 0.94828 0.95158 0.99129 1.69975 1.08773 1.49639 1.24490 0.86578 0.80413 0.77744 0.83513 1.19875 1.21065 1.20943 1.22413 0.95726 0.97627 0.95660 0.92047 1.22721 0.97351 1.01499 0.94250 1.23000 0.92942 0.96024 0.96503 1.63610 1.02685 1.56330 1.03189 1.22505 0.91498 0.98534 1.00239 1.22793 0.96734 0.98891 0.88346 0.96029 0.92888 0.93106 0.82953 0.96757 0.95192 0.93003 0.92548 0.89109 0.91201 0.94687 0.96018 0.92168 0.91631 0.89077 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.00 60.07 0.60 1.16 16 2 N -0.68 -12.86 4.72 -114.00 -0.54 -13.40 16 3 C 0.10 2.00 2.00 -67.71 -0.14 1.87 16 4 H 0.05 0.97 7.52 -51.93 -0.39 0.58 16 5 C 0.01 0.20 4.07 -27.88 -0.11 0.08 16 6 C -0.52 -14.15 8.29 -34.44 -0.29 -14.44 16 7 H 0.05 1.43 6.90 -52.49 -0.36 1.06 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 10 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 14 C -0.09 -1.68 2.91 -88.80 -0.26 -1.94 16 15 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 16 C -0.12 -1.86 6.45 -24.59 -0.16 -2.01 16 17 C 0.04 0.62 6.73 -2.29 -0.02 0.61 16 18 N -0.53 -8.59 5.44 -239.51 -1.30 -9.89 16 19 C 0.02 0.29 9.12 60.07 0.55 0.84 16 20 C 0.06 1.07 5.41 -2.84 -0.02 1.06 16 21 H 0.02 0.39 7.29 -51.93 -0.38 0.01 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.79 7.81 -51.93 -0.41 0.38 16 24 H 0.35 7.27 7.64 -39.29 -0.30 6.97 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.79 7.10 -51.92 -0.37 0.42 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.48 6.46 -51.93 -0.34 1.15 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.03 0.47 7.78 -51.93 -0.40 0.07 16 32 H 0.02 0.29 8.10 -51.93 -0.42 -0.13 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.81 6.81 -51.93 -0.35 1.46 16 36 H 0.04 0.81 7.58 -51.93 -0.39 0.42 16 LS Contribution 281.04 15.07 4.24 4.24 Total: -1.00 -28.17 281.04 -8.03 -36.20 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.21 Total: 3.10 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 0.07 Total: -11.18 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -1.11 Total: -48.62 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.17 -8.03 -36.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259289232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.989 kcal (2) G-P(sol) polarization free energy of solvation -28.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds