Wall clock time and date at job start Mon Mar 30 2020 02:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46907 * 110.99970 * 2 1 4 4 H 1.09001 * 109.46897 * 358.11173 * 3 2 1 5 5 C 1.52998 * 109.47177 * 238.11152 * 3 2 1 6 6 C 1.50701 * 109.47016 * 62.11651 * 5 3 2 7 7 H 1.07997 * 120.00543 * 5.10791 * 6 5 3 8 8 C 1.37881 * 119.99722 * 185.10646 * 6 5 3 9 9 N 1.31516 * 119.99743 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00001 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46866 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47215 * 119.99699 * 10 8 6 13 13 H 1.48497 * 109.47043 * 239.99908 * 10 8 6 14 14 C 1.53003 * 109.46781 * 118.11119 * 3 2 1 15 15 H 1.08999 * 110.62341 * 183.47674 * 14 3 2 16 16 C 1.55143 * 110.70457 * 306.76608 * 14 3 2 17 17 C 1.54909 * 101.65110 * 154.04231 * 16 14 3 18 18 N 1.47849 * 104.79370 * 322.92765 * 17 16 14 19 19 C 1.46905 * 111.00056 * 146.36430 * 18 17 16 20 20 C 1.47446 * 108.56750 * 24.10032 * 18 17 16 21 21 H 1.09004 * 109.46899 * 67.42530 * 1 2 3 22 22 H 1.08998 * 109.47026 * 187.42350 * 1 2 3 23 23 H 1.09004 * 109.47195 * 307.42712 * 1 2 3 24 24 H 1.00898 * 110.99934 * 236.04790 * 2 1 3 25 25 H 1.08995 * 109.46952 * 182.12341 * 5 3 2 26 26 H 1.09008 * 109.46729 * 302.12104 * 5 3 2 27 27 H 0.97009 * 119.99360 * 180.02562 * 9 8 6 28 28 H 1.08998 * 110.99163 * 272.12595 * 16 14 3 29 29 H 1.08998 * 110.98977 * 35.94686 * 16 14 3 30 30 H 1.08998 * 110.37564 * 204.10419 * 17 16 14 31 31 H 1.09001 * 110.46970 * 81.80422 * 17 16 14 32 32 H 1.08999 * 109.47049 * 299.15811 * 19 18 17 33 33 H 1.08997 * 109.46954 * 59.15589 * 19 18 17 34 34 H 1.08995 * 109.47043 * 179.15914 * 19 18 17 35 35 H 1.09001 * 109.88932 * 239.60431 * 20 18 17 36 36 H 1.09000 * 109.89187 * 118.41208 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.1668 2.0788 -0.0339 5 6 2.8896 1.5746 -1.2248 6 6 2.0724 1.3965 -2.4784 7 1 1.0055 1.2440 -2.4104 8 6 2.6870 1.4285 -3.7122 9 7 3.9863 1.6148 -3.7950 10 14 1.6740 1.2086 -5.2662 11 1 0.2466 1.0183 -4.9037 12 1 1.8105 2.4152 -6.1210 13 1 2.1595 0.0180 -6.0092 14 6 2.8128 1.6040 1.2724 15 1 3.1617 2.6354 1.3215 16 6 1.9823 1.2413 2.5317 17 6 3.0954 0.8865 3.5489 18 7 4.1305 0.1959 2.7504 19 6 5.4747 0.4864 3.2667 20 6 4.0010 0.6220 1.3448 21 1 -0.3633 0.3945 -0.9490 22 1 -0.3633 -1.0190 0.1328 23 1 -0.3634 0.6246 0.8161 24 1 1.8306 -0.5261 -0.7814 25 1 3.3103 2.5799 -1.2048 26 1 3.6972 0.8424 -1.2104 27 1 4.4186 1.6376 -4.6632 28 1 1.3987 2.0959 2.8739 29 1 1.3391 0.3823 2.3411 30 1 2.7063 0.2227 4.3210 31 1 3.5039 1.7917 3.9982 32 1 5.6627 1.5585 3.2077 33 1 5.5429 0.1622 4.3051 34 1 6.2158 -0.0458 2.6705 35 1 3.8058 -0.2434 0.7114 36 1 4.9148 1.1213 1.0229 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259289232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:37 Heat of formation + Delta-G solvation = -23.537808 kcal Electronic energy + Delta-G solvation = -14894.117633 eV Core-core repulsion = 12604.784031 eV Total energy + Delta-G solvation = -2289.333602 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.28277 -37.45131 -34.75616 -32.82420 -31.42360 -29.36846 -27.21972 -26.00608 -24.75522 -22.92491 -21.76370 -20.18162 -18.52887 -17.18542 -16.75768 -16.33698 -15.86712 -15.55073 -14.71942 -14.65336 -14.26249 -14.10713 -13.57454 -13.40627 -13.21993 -12.98635 -12.74402 -12.66408 -12.40725 -12.31472 -12.14231 -12.05969 -11.78802 -11.36569 -11.00200 -10.94821 -10.59776 -9.21368 -9.01075 -8.21140 -6.31701 1.36770 1.38317 1.49651 2.38088 3.11323 3.21486 3.61439 3.79997 3.95909 4.16904 4.47262 4.50388 4.58522 4.59333 4.65026 4.69427 4.74861 4.82639 4.97516 4.99533 5.02963 5.10004 5.16453 5.24403 5.38018 5.46324 5.53394 5.60509 5.81061 6.10409 6.21174 6.26593 6.43858 6.66990 6.84920 7.37757 8.90041 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040810 B = 0.008238 C = 0.007236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.933360 B = 3398.097425 C = 3868.767213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.675 5.675 3 C 0.112 3.888 4 H 0.041 0.959 5 C 0.018 3.982 6 C -0.533 4.533 7 H 0.056 0.944 8 C 0.006 3.994 9 N -0.928 5.928 10 Si 0.959 3.041 11 H -0.265 1.265 12 H -0.282 1.282 13 H -0.279 1.279 14 C -0.095 4.095 15 H 0.057 0.943 16 C -0.111 4.111 17 C 0.045 3.955 18 N -0.546 5.546 19 C 0.020 3.980 20 C 0.067 3.933 21 H 0.005 0.995 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.339 0.661 25 H -0.016 1.016 26 H 0.006 0.994 27 H 0.262 0.738 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.023 0.977 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.201 -1.578 12.187 12.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.305 5.305 3 C 0.001 3.999 4 H 0.060 0.940 5 C -0.020 4.020 6 C -0.571 4.571 7 H 0.074 0.926 8 C -0.193 4.193 9 N -0.568 5.568 10 Si 0.784 3.216 11 H -0.189 1.189 12 H -0.208 1.208 13 H -0.204 1.204 14 C -0.115 4.115 15 H 0.076 0.924 16 C -0.149 4.149 17 C -0.082 4.082 18 N -0.270 5.270 19 C -0.128 4.128 20 C -0.061 4.061 21 H 0.024 0.976 22 H 0.093 0.907 23 H 0.085 0.915 24 H 0.157 0.843 25 H 0.003 0.997 26 H 0.024 0.976 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.079 -2.178 12.801 13.345 hybrid contribution -0.024 1.294 -2.259 2.604 sum -3.103 -0.884 10.542 11.024 Atomic orbital electron populations 1.22242 0.88140 1.01985 0.99139 1.60606 1.07537 1.13169 1.49177 1.21285 0.95773 0.89583 0.93228 0.94038 1.19423 0.95085 0.94901 0.92559 1.21559 0.94319 1.49133 0.92126 0.92554 1.25868 0.95871 0.94927 1.02614 1.70103 1.10502 1.50833 1.25360 0.85493 0.79103 0.77678 0.79312 1.18911 1.20780 1.20442 1.22351 0.95936 0.97387 0.95830 0.92425 1.22659 0.97374 1.01927 0.92913 1.23066 0.91991 0.96900 0.96239 1.63591 1.04387 1.56846 1.02155 1.22563 0.90137 0.98718 1.01395 1.22571 0.96134 0.97668 0.89708 0.97642 0.90689 0.91473 0.84339 0.99744 0.97570 0.92889 0.90651 0.89727 0.89409 0.93375 0.95863 0.89825 0.91879 0.91491 0.95210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 10.00 127.69 1.28 2.38 16 2 N -0.67 -25.20 4.72 -514.58 -2.43 -27.63 16 3 C 0.11 4.54 2.00 44.91 0.09 4.63 16 4 H 0.04 1.72 7.52 -2.39 -0.02 1.70 16 5 C 0.02 0.92 4.07 29.85 0.12 1.05 16 6 C -0.53 -29.21 8.29 25.60 0.21 -29.00 16 7 H 0.06 3.00 6.90 -2.91 -0.02 2.98 16 8 C 0.01 0.31 5.46 84.66 0.46 0.78 16 9 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 10 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 11 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 14 C -0.09 -3.35 2.91 -9.61 -0.03 -3.37 16 15 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 16 C -0.11 -3.16 6.45 31.98 0.21 -2.95 16 17 C 0.05 1.18 6.73 86.77 0.58 1.76 16 18 N -0.55 -16.74 5.44 -911.68 -4.96 -21.70 16 19 C 0.02 0.52 9.12 127.69 1.16 1.68 16 20 C 0.07 2.43 5.41 86.64 0.47 2.90 16 21 H 0.00 0.18 7.29 -2.39 -0.02 0.16 16 22 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.07 1.91 7.81 -2.39 -0.02 1.89 16 24 H 0.34 14.17 7.64 -89.70 -0.69 13.48 16 25 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 26 H 0.01 0.33 7.10 -2.38 -0.02 0.31 16 27 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 2.55 6.46 -2.39 -0.02 2.53 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.14 7.78 -2.39 -0.02 1.13 16 32 H 0.02 0.58 8.10 -2.39 -0.02 0.56 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 35 H 0.07 2.74 6.81 -2.39 -0.02 2.73 16 36 H 0.03 1.13 7.58 -2.39 -0.02 1.11 16 Total: -1.00 -60.43 281.04 -0.17 -60.60 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.35 Total: 18.27 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 4.56 Total: -20.15 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -7.11 Total: -104.63 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -60.43 -0.17 -60.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259289232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.058 kcal (2) G-P(sol) polarization free energy of solvation -60.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds