Wall clock time and date at job start Mon Mar 30 2020 02:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 111.00118 * 2 1 4 4 H 1.09001 * 109.46791 * 351.49713 * 3 2 1 5 5 C 1.52999 * 109.47189 * 111.49852 * 3 2 1 6 6 C 1.50697 * 109.46993 * 300.02605 * 5 3 2 7 7 H 1.08003 * 120.00457 * 358.25594 * 6 5 3 8 8 C 1.37882 * 119.99820 * 178.25508 * 6 5 3 9 9 N 1.31511 * 120.00060 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99781 * 0.02562 * 8 6 5 11 11 H 1.48489 * 109.47243 * 90.00011 * 10 8 6 12 12 H 1.48507 * 109.46683 * 209.99736 * 10 8 6 13 13 H 1.48495 * 109.46903 * 329.99430 * 10 8 6 14 14 C 1.52998 * 109.46932 * 231.50184 * 3 2 1 15 15 H 1.09004 * 110.64340 * 188.50929 * 14 3 2 16 16 C 1.54597 * 110.72684 * 65.36109 * 14 3 2 17 17 C 1.53992 * 105.13880 * 219.68279 * 16 14 3 18 18 N 1.47905 * 107.05849 * 358.77453 * 17 16 14 19 19 C 1.46905 * 110.99899 * 145.84361 * 18 17 16 20 20 C 1.48534 * 105.82071 * 25.33165 * 18 17 16 21 21 H 1.08995 * 109.47222 * 305.60267 * 1 2 3 22 22 H 1.08999 * 109.46812 * 185.60687 * 1 2 3 23 23 H 1.08996 * 109.47009 * 65.60421 * 1 2 3 24 24 H 1.00898 * 111.00014 * 123.95204 * 2 1 3 25 25 H 1.09003 * 109.47191 * 60.02759 * 5 3 2 26 26 H 1.09002 * 109.46883 * 180.02562 * 5 3 2 27 27 H 0.97001 * 119.99788 * 179.97438 * 9 8 6 28 28 H 1.09005 * 110.30616 * 338.59853 * 16 14 3 29 29 H 1.08996 * 110.31367 * 100.76831 * 16 14 3 30 30 H 1.09002 * 109.91797 * 118.12189 * 17 16 14 31 31 H 1.09001 * 109.92102 * 239.41885 * 17 16 14 32 32 H 1.08998 * 109.46891 * 60.12770 * 19 18 17 33 33 H 1.08997 * 109.46865 * 180.12642 * 19 18 17 34 34 H 1.09001 * 109.47039 * 300.12027 * 19 18 17 35 35 H 1.08995 * 110.66606 * 202.36033 * 20 18 17 36 36 H 1.08997 * 110.67152 * 79.22676 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.1768 2.0749 -0.1520 5 6 2.6718 1.6581 1.3421 6 6 1.6662 1.5055 2.4541 7 1 0.6400 1.2591 2.2242 8 6 2.0561 1.6805 3.7650 9 7 1.1784 1.5479 4.7353 10 14 3.8307 2.1074 4.1625 11 1 3.9934 3.5833 4.1774 12 1 4.1856 1.5568 5.4953 13 1 4.7237 1.5213 3.1310 14 6 3.0165 1.5257 -1.1289 15 1 3.5287 2.4851 -1.0554 16 6 2.3345 1.3741 -2.5080 17 6 3.3290 0.5659 -3.3619 18 7 4.5153 0.3068 -2.5174 19 6 5.1053 -1.0027 -2.8259 20 6 4.0316 0.3552 -1.1138 21 1 -0.3633 0.5982 0.8355 22 1 -0.3633 -1.0228 0.1004 23 1 -0.3633 0.4244 -0.9359 24 1 1.8306 -0.5261 0.7814 25 1 3.4908 0.9550 1.4938 26 1 3.0620 2.6759 1.3422 27 1 1.4528 1.6706 5.6576 28 1 1.3943 0.8318 -2.4075 29 1 2.1615 2.3534 -2.9543 30 1 2.8762 -0.3779 -3.6656 31 1 3.6177 1.1422 -4.2409 32 1 5.4114 -1.0259 -3.8718 33 1 5.9744 -1.1687 -2.1893 34 1 4.3681 -1.7850 -2.6455 35 1 4.8539 0.5679 -0.4307 36 1 3.5380 -0.5785 -0.8445 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259289234.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:39 Heat of formation + Delta-G solvation = -0.907504 kcal Electronic energy + Delta-G solvation = -14935.806615 eV Core-core repulsion = 12647.454337 eV Total energy + Delta-G solvation = -2288.352278 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.95772 -36.05318 -32.59211 -31.72441 -30.01536 -28.14391 -25.95906 -24.56701 -22.99656 -21.17627 -20.28578 -18.98789 -16.86545 -15.76006 -15.21394 -14.67226 -14.49331 -14.07751 -13.58685 -13.14024 -13.09243 -12.44543 -12.40740 -11.87020 -11.66786 -11.45747 -11.36174 -11.23657 -11.04690 -10.94602 -10.53179 -10.37202 -10.01106 -9.72798 -9.53789 -9.09439 -8.60564 -8.16072 -7.58170 -6.10531 -4.09987 3.27838 3.35834 3.39655 4.34826 4.40529 4.97608 5.07289 5.18081 5.28608 5.33965 5.54561 5.64632 5.73065 5.87843 5.95387 5.96630 6.06409 6.15969 6.21890 6.25726 6.34989 6.44980 6.54347 6.55800 6.70852 6.80850 7.09678 7.17498 7.21222 7.32056 7.72649 7.88359 8.20422 8.44644 8.93736 9.52088 11.01991 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034929 B = 0.009147 C = 0.007947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.425311 B = 3060.257241 C = 3522.658504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.683 5.683 3 C 0.104 3.896 4 H 0.059 0.941 5 C -0.032 4.032 6 C -0.527 4.527 7 H 0.075 0.925 8 C 0.069 3.931 9 N -0.901 5.901 10 Si 0.879 3.121 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.264 1.264 14 C -0.078 4.078 15 H 0.073 0.927 16 C -0.120 4.120 17 C 0.041 3.959 18 N -0.529 5.529 19 C 0.018 3.982 20 C 0.046 3.954 21 H 0.037 0.963 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.347 0.653 25 H 0.022 0.978 26 H 0.015 0.985 27 H 0.263 0.737 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.977 -3.015 -12.941 13.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.313 5.313 3 C -0.006 4.006 4 H 0.077 0.923 5 C -0.070 4.070 6 C -0.565 4.565 7 H 0.093 0.907 8 C -0.132 4.132 9 N -0.540 5.540 10 Si 0.706 3.294 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.189 1.189 14 C -0.098 4.098 15 H 0.091 0.909 16 C -0.158 4.158 17 C -0.087 4.087 18 N -0.253 5.253 19 C -0.131 4.131 20 C -0.081 4.081 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.166 0.834 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.412 -2.709 -13.532 14.489 hybrid contribution 0.078 -0.095 1.459 1.464 sum 4.490 -2.804 -12.074 13.183 Atomic orbital electron populations 1.22201 0.89235 1.00490 0.99988 1.60637 1.06906 1.14251 1.49552 1.21374 0.95735 0.89454 0.94049 0.92266 1.20135 0.97024 0.96747 0.93133 1.21182 0.96959 1.48503 0.89866 0.90688 1.25023 0.97239 0.94554 0.96409 1.69913 1.34282 1.50016 0.99784 0.86791 0.85905 0.78985 0.77708 1.20361 1.21496 1.18850 1.22153 0.95628 0.97867 0.94158 0.90912 1.22377 0.98773 0.99351 0.95343 1.22774 0.90491 0.98812 0.96596 1.64754 1.26975 1.28877 1.04698 1.22457 0.99444 0.90012 1.01171 1.23215 0.96922 0.99406 0.88580 0.94473 0.93025 0.93399 0.83417 0.95976 0.96671 0.92719 0.90759 0.92338 0.94279 0.91475 0.92104 0.91711 0.95459 0.91110 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.19 60.06 0.61 1.15 16 2 N -0.68 -12.46 4.52 -114.01 -0.51 -12.97 16 3 C 0.10 2.01 1.90 -67.71 -0.13 1.88 16 4 H 0.06 1.19 7.56 -51.93 -0.39 0.80 16 5 C -0.03 -0.74 3.29 -27.88 -0.09 -0.83 16 6 C -0.53 -14.28 8.96 -34.44 -0.31 -14.59 16 7 H 0.08 2.17 5.77 -52.48 -0.30 1.86 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 10 Si 0.88 21.47 27.50 -169.99 -4.68 16.79 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 13 H -0.26 -6.20 6.49 56.52 0.37 -5.84 16 14 C -0.08 -1.32 2.89 -88.76 -0.26 -1.58 16 15 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 16 C -0.12 -1.77 6.42 -25.37 -0.16 -1.93 16 17 C 0.04 0.57 6.70 -2.75 -0.02 0.55 16 18 N -0.53 -7.91 5.55 -238.71 -1.33 -9.24 16 19 C 0.02 0.23 9.40 60.07 0.56 0.79 16 20 C 0.05 0.76 5.34 -1.90 -0.01 0.75 16 21 H 0.04 0.74 6.16 -51.93 -0.32 0.42 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.75 7.87 -51.93 -0.41 0.34 16 24 H 0.35 6.88 7.86 -39.29 -0.31 6.57 16 25 H 0.02 0.51 6.62 -51.93 -0.34 0.17 16 26 H 0.02 0.35 7.66 -51.93 -0.40 -0.05 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.07 1.13 7.17 -51.93 -0.37 0.76 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.52 7.73 -51.93 -0.40 0.12 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.03 0.34 8.00 -51.93 -0.42 -0.07 16 35 H 0.07 1.22 8.12 -51.93 -0.42 0.79 16 36 H 0.07 1.12 6.69 -51.93 -0.35 0.77 16 LS Contribution 277.16 15.07 4.18 4.18 Total: -1.00 -28.59 277.16 -7.60 -36.19 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.14 Total: 3.42 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 0.10 Total: -11.93 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -1.07 Total: -48.65 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.68 Total: 16.79 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.59 -7.60 -36.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259289234.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.280 kcal (2) G-P(sol) polarization free energy of solvation -28.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds