Wall clock time and date at job start Mon Mar 30 2020 02:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 111.00118 * 2 1 4 4 H 1.09001 * 109.46791 * 351.49713 * 3 2 1 5 5 C 1.52999 * 109.47189 * 111.49852 * 3 2 1 6 6 C 1.50697 * 109.46993 * 300.02605 * 5 3 2 7 7 H 1.08003 * 120.00457 * 358.25594 * 6 5 3 8 8 C 1.37882 * 119.99820 * 178.25508 * 6 5 3 9 9 N 1.31511 * 120.00060 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99781 * 0.02562 * 8 6 5 11 11 H 1.48489 * 109.47243 * 90.00011 * 10 8 6 12 12 H 1.48507 * 109.46683 * 209.99736 * 10 8 6 13 13 H 1.48495 * 109.46903 * 329.99430 * 10 8 6 14 14 C 1.52998 * 109.46932 * 231.50184 * 3 2 1 15 15 H 1.09004 * 110.64340 * 188.50929 * 14 3 2 16 16 C 1.54597 * 110.72684 * 65.36109 * 14 3 2 17 17 C 1.53992 * 105.13880 * 219.68279 * 16 14 3 18 18 N 1.47905 * 107.05849 * 358.77453 * 17 16 14 19 19 C 1.46905 * 110.99899 * 145.84361 * 18 17 16 20 20 C 1.48534 * 105.82071 * 25.33165 * 18 17 16 21 21 H 1.08995 * 109.47222 * 305.60267 * 1 2 3 22 22 H 1.08999 * 109.46812 * 185.60687 * 1 2 3 23 23 H 1.08996 * 109.47009 * 65.60421 * 1 2 3 24 24 H 1.00898 * 111.00014 * 123.95204 * 2 1 3 25 25 H 1.09003 * 109.47191 * 60.02759 * 5 3 2 26 26 H 1.09002 * 109.46883 * 180.02562 * 5 3 2 27 27 H 0.97001 * 119.99788 * 179.97438 * 9 8 6 28 28 H 1.09005 * 110.30616 * 338.59853 * 16 14 3 29 29 H 1.08996 * 110.31367 * 100.76831 * 16 14 3 30 30 H 1.09002 * 109.91797 * 118.12189 * 17 16 14 31 31 H 1.09001 * 109.92102 * 239.41885 * 17 16 14 32 32 H 1.08998 * 109.46891 * 60.12770 * 19 18 17 33 33 H 1.08997 * 109.46865 * 180.12642 * 19 18 17 34 34 H 1.09001 * 109.47039 * 300.12027 * 19 18 17 35 35 H 1.08995 * 110.66606 * 202.36033 * 20 18 17 36 36 H 1.08997 * 110.67152 * 79.22676 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.1768 2.0749 -0.1520 5 6 2.6718 1.6581 1.3421 6 6 1.6662 1.5055 2.4541 7 1 0.6400 1.2591 2.2242 8 6 2.0561 1.6805 3.7650 9 7 1.1784 1.5479 4.7353 10 14 3.8307 2.1074 4.1625 11 1 3.9934 3.5833 4.1774 12 1 4.1856 1.5568 5.4953 13 1 4.7237 1.5213 3.1310 14 6 3.0165 1.5257 -1.1289 15 1 3.5287 2.4851 -1.0554 16 6 2.3345 1.3741 -2.5080 17 6 3.3290 0.5659 -3.3619 18 7 4.5153 0.3068 -2.5174 19 6 5.1053 -1.0027 -2.8259 20 6 4.0316 0.3552 -1.1138 21 1 -0.3633 0.5982 0.8355 22 1 -0.3633 -1.0228 0.1004 23 1 -0.3633 0.4244 -0.9359 24 1 1.8306 -0.5261 0.7814 25 1 3.4908 0.9550 1.4938 26 1 3.0620 2.6759 1.3422 27 1 1.4528 1.6706 5.6576 28 1 1.3943 0.8318 -2.4075 29 1 2.1615 2.3534 -2.9543 30 1 2.8762 -0.3779 -3.6656 31 1 3.6177 1.1422 -4.2409 32 1 5.4114 -1.0259 -3.8718 33 1 5.9744 -1.1687 -2.1893 34 1 4.3681 -1.7850 -2.6455 35 1 4.8539 0.5679 -0.4307 36 1 3.5380 -0.5785 -0.8445 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259289234.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:39 Heat of formation + Delta-G solvation = -21.164676 kcal Electronic energy + Delta-G solvation = -14936.685032 eV Core-core repulsion = 12647.454337 eV Total energy + Delta-G solvation = -2289.230695 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.25151 -37.52237 -34.67034 -32.99267 -31.63867 -29.61286 -27.34063 -25.92828 -24.62930 -22.71911 -21.54055 -20.43992 -18.93406 -17.03850 -16.65228 -16.22633 -15.99859 -15.79454 -14.77125 -14.67186 -14.41002 -14.15984 -13.73900 -13.51878 -13.40882 -12.91211 -12.71264 -12.63548 -12.43731 -12.22642 -12.09079 -11.92227 -11.69198 -11.32775 -11.11367 -10.96994 -10.78147 -9.30488 -9.13093 -8.29005 -6.32539 1.34345 1.36525 1.47450 2.34936 3.05647 3.22006 3.56229 3.82119 3.97432 4.14440 4.44585 4.50339 4.57655 4.60872 4.65689 4.70464 4.74151 4.89396 4.92719 4.95702 5.02690 5.06377 5.14128 5.20015 5.30405 5.32303 5.40858 5.50993 5.65992 6.02614 6.20123 6.27299 6.33189 6.58470 6.77394 7.32818 8.86336 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034929 B = 0.009147 C = 0.007947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.425311 B = 3060.257241 C = 3522.658504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.671 5.671 3 C 0.112 3.888 4 H 0.047 0.953 5 C -0.027 4.027 6 C -0.526 4.526 7 H 0.046 0.954 8 C 0.009 3.991 9 N -0.949 5.949 10 Si 0.942 3.058 11 H -0.273 1.273 12 H -0.288 1.288 13 H -0.247 1.247 14 C -0.077 4.077 15 H 0.070 0.930 16 C -0.115 4.115 17 C 0.044 3.956 18 N -0.538 5.538 19 C 0.017 3.983 20 C 0.050 3.950 21 H 0.003 0.997 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.338 0.662 25 H 0.025 0.975 26 H 0.014 0.986 27 H 0.264 0.736 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.061 0.939 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.447 -3.160 -14.804 16.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.300 5.300 3 C 0.002 3.998 4 H 0.066 0.934 5 C -0.065 4.065 6 C -0.564 4.564 7 H 0.064 0.936 8 C -0.188 4.188 9 N -0.590 5.590 10 Si 0.767 3.233 11 H -0.198 1.198 12 H -0.214 1.214 13 H -0.170 1.170 14 C -0.097 4.097 15 H 0.089 0.911 16 C -0.153 4.153 17 C -0.084 4.084 18 N -0.262 5.262 19 C -0.131 4.131 20 C -0.077 4.077 21 H 0.021 0.979 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.155 0.845 25 H 0.043 0.957 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.883 -2.856 -15.431 16.759 hybrid contribution -0.464 -0.069 2.005 2.059 sum 5.419 -2.924 -13.425 14.770 Atomic orbital electron populations 1.22208 0.88637 1.01070 0.99555 1.60743 1.07303 1.13395 1.48603 1.21256 0.95757 0.89615 0.93196 0.93445 1.20084 0.96126 0.96628 0.93712 1.21497 0.96685 1.47004 0.91179 0.93634 1.25900 1.01626 0.94822 0.96418 1.70057 1.36600 1.52067 1.00248 0.85770 0.80841 0.78920 0.77791 1.19796 1.21381 1.17018 1.22062 0.95209 0.98034 0.94412 0.91149 1.22331 0.98579 1.00315 0.94071 1.22808 0.89825 0.99167 0.96607 1.64754 1.27367 1.30375 1.03723 1.22519 0.99361 0.88807 1.02424 1.23085 0.96301 0.98636 0.89723 0.97872 0.91366 0.91411 0.84509 0.95714 0.96727 0.92709 0.91261 0.91003 0.93655 0.89851 0.90241 0.91395 0.95528 0.92077 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.21 10.19 127.69 1.30 2.51 16 2 N -0.67 -24.06 4.52 -514.62 -2.32 -26.39 16 3 C 0.11 4.25 1.90 44.91 0.09 4.33 16 4 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 5 C -0.03 -1.23 3.29 29.85 0.10 -1.13 16 6 C -0.53 -28.91 8.96 25.60 0.23 -28.68 16 7 H 0.05 2.73 5.77 -2.91 -0.02 2.71 16 8 C 0.01 0.54 5.47 84.66 0.46 1.00 16 9 N -0.95 -58.62 13.96 21.45 0.30 -58.32 16 10 Si 0.94 44.10 27.50 68.60 1.89 45.99 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 13 H -0.25 -10.75 6.49 99.48 0.65 -10.10 16 14 C -0.08 -2.47 2.89 -9.59 -0.03 -2.50 16 15 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 16 C -0.11 -3.08 6.42 31.47 0.20 -2.88 16 17 C 0.04 1.06 6.70 86.45 0.58 1.64 16 18 N -0.54 -14.62 5.55 -909.14 -5.05 -19.66 16 19 C 0.02 0.39 9.40 127.69 1.20 1.59 16 20 C 0.05 1.56 5.34 86.65 0.46 2.02 16 21 H 0.00 0.11 6.16 -2.39 -0.01 0.10 16 22 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.07 2.04 7.87 -2.39 -0.02 2.02 16 24 H 0.34 13.31 7.86 -89.70 -0.70 12.61 16 25 H 0.02 1.11 6.62 -2.39 -0.02 1.09 16 26 H 0.01 0.66 7.66 -2.39 -0.02 0.64 16 27 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.07 1.93 7.17 -2.38 -0.02 1.91 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.06 7.73 -2.39 -0.02 1.04 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.03 0.60 8.00 -2.39 -0.02 0.58 16 35 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 36 H 0.06 1.87 6.69 -2.39 -0.02 1.85 16 Total: -1.00 -60.94 277.16 -0.32 -61.26 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.28 Total: 19.23 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 4.59 Total: -22.10 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -7.07 Total: -104.37 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.89 Total: 45.99 kcal Total: -60.94 -0.32 -61.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259289234.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.094 kcal (2) G-P(sol) polarization free energy of solvation -60.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds