Wall clock time and date at job start Mon Mar 30 2020 02:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99806 * 2 1 4 4 H 1.08993 * 109.47095 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46638 * 299.99989 * 3 2 1 6 6 H 1.07998 * 119.99503 * 120.00218 * 5 3 2 7 7 C 1.37871 * 120.00434 * 299.99681 * 5 3 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 3 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53002 * 109.47088 * 59.99709 * 3 2 1 14 14 C 1.53121 * 109.52210 * 179.68144 * 13 3 2 15 15 C 1.53029 * 109.27879 * 182.44118 * 14 13 3 16 16 N 1.46849 * 109.52388 * 59.18129 * 15 14 13 17 17 C 1.46902 * 111.00389 * 174.15833 * 16 15 14 18 18 C 1.46844 * 111.19780 * 298.26041 * 16 15 14 19 19 C 1.53038 * 109.52573 * 61.73912 * 18 16 15 20 20 H 1.09006 * 109.47066 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47159 * 299.99780 * 1 2 3 22 22 H 1.08996 * 109.47162 * 60.00414 * 1 2 3 23 23 H 1.00898 * 111.00163 * 123.95374 * 2 1 3 24 24 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 25 25 H 1.08992 * 109.52276 * 299.87624 * 13 3 2 26 26 H 1.09004 * 109.50337 * 302.38752 * 14 13 3 27 27 H 1.09003 * 109.49965 * 62.50242 * 14 13 3 28 28 H 1.08996 * 109.46550 * 299.17038 * 15 14 13 29 29 H 1.09000 * 109.46248 * 179.19707 * 15 14 13 30 30 H 1.08999 * 109.47052 * 184.21393 * 17 16 15 31 31 H 1.09003 * 109.46626 * 304.21299 * 17 16 15 32 32 H 1.08995 * 109.47015 * 64.21010 * 17 16 15 33 33 H 1.09001 * 109.46299 * 301.71992 * 18 16 15 34 34 H 1.08999 * 109.46169 * 181.75133 * 18 16 15 35 35 H 1.08996 * 109.50224 * 180.87973 * 19 18 16 36 36 H 1.08996 * 109.53546 * 60.78445 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 3.0850 1.3424 -0.0005 5 6 1.5121 2.0950 -1.2305 6 1 0.9148 2.9893 -1.1314 7 6 1.8325 1.6153 -2.4828 8 7 2.5644 0.5293 -2.6035 9 14 1.2340 2.5124 -4.0080 10 1 -0.0860 1.9683 -4.4162 11 1 1.1017 3.9612 -3.7101 12 1 2.2106 2.3209 -5.1102 13 6 1.5048 2.1061 1.2492 14 6 2.0593 3.5334 1.2544 15 6 1.6155 4.2432 2.5354 16 7 2.1097 3.5026 3.7033 17 6 1.8215 4.2284 4.9476 18 6 1.5532 2.1444 3.7452 19 6 1.9952 1.3719 2.5002 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 1.8306 -0.5261 0.7813 24 1 2.8754 0.0635 -1.8115 25 1 0.4153 2.1375 1.2489 26 1 3.1481 3.5009 1.2148 27 1 1.6790 4.0746 0.3881 28 1 0.5269 4.2874 2.5677 29 1 2.0205 5.2550 2.5490 30 1 2.2632 3.6955 5.7896 31 1 2.2448 5.2311 4.8896 32 1 0.7426 4.2969 5.0865 33 1 0.4649 2.1985 3.7718 34 1 1.9131 1.6318 4.6373 35 1 1.5691 0.3689 2.5240 36 1 3.0829 1.3048 2.4799 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259362101.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:41 Heat of formation + Delta-G solvation = -5.029419 kcal Electronic energy + Delta-G solvation = -15180.232588 eV Core-core repulsion = 12891.701570 eV Total energy + Delta-G solvation = -2288.531018 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.93204 -36.12644 -32.40258 -31.68148 -30.38877 -27.52079 -25.17393 -24.38397 -22.50868 -22.44609 -20.17534 -18.92891 -16.45975 -15.63181 -14.98312 -14.81930 -14.22317 -13.77846 -13.64753 -13.36568 -13.13142 -12.54845 -12.11448 -11.98779 -11.69234 -11.46287 -11.13698 -10.81050 -10.73300 -10.66068 -10.44159 -10.06606 -9.85326 -9.70485 -9.63995 -8.35809 -8.19544 -8.15037 -7.05241 -6.06566 -3.87350 3.50496 3.53412 3.68594 4.14160 4.65620 5.16197 5.24246 5.33650 5.37499 5.51302 5.60412 5.66384 5.79128 5.83972 5.86075 5.93552 6.01778 6.14595 6.28997 6.39963 6.45575 6.49991 6.59867 6.84546 6.90172 7.04054 7.09594 7.27748 7.33345 7.54245 8.05660 8.38232 8.68279 8.86677 9.17539 9.94499 11.32226 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041069 B = 0.009187 C = 0.008108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.619855 B = 3047.011560 C = 3452.485500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.678 5.678 3 C 0.209 3.791 4 H 0.029 0.971 5 C -0.603 4.603 6 H 0.045 0.955 7 C 0.035 3.965 8 N -0.895 5.895 9 Si 1.060 2.940 10 H -0.292 1.292 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.107 4.107 14 C -0.095 4.095 15 C 0.055 3.945 16 N -0.543 5.543 17 C 0.026 3.974 18 C 0.061 3.939 19 C -0.115 4.115 20 H 0.033 0.967 21 H -0.001 1.001 22 H 0.072 0.928 23 H 0.300 0.700 24 H 0.289 0.711 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.025 0.975 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.019 0.981 33 H 0.025 0.975 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.576 4.346 11.307 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.307 5.307 3 C 0.102 3.898 4 H 0.047 0.953 5 C -0.642 4.642 6 H 0.063 0.937 7 C -0.174 4.174 8 N -0.530 5.530 9 Si 0.890 3.110 10 H -0.219 1.219 11 H -0.218 1.218 12 H -0.212 1.212 13 C -0.128 4.128 14 C -0.134 4.134 15 C -0.073 4.073 16 N -0.268 5.268 17 C -0.123 4.123 18 C -0.067 4.067 19 C -0.153 4.153 20 H 0.052 0.948 21 H 0.018 0.982 22 H 0.091 0.909 23 H 0.116 0.884 24 H 0.101 0.899 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.974 4.176 8.912 10.038 hybrid contribution -1.279 0.399 2.782 3.088 sum -3.253 4.575 11.694 12.971 Atomic orbital electron populations 1.21865 0.90032 0.98185 0.99959 1.61007 1.06585 1.17084 1.46013 1.19352 0.94770 0.84018 0.91623 0.95292 1.21724 1.38821 1.12116 0.91541 0.93708 1.25511 0.94932 0.96471 1.00501 1.70514 1.30864 1.16171 1.35421 0.83699 0.76170 0.75040 0.76083 1.21859 1.21823 1.21242 1.21811 0.99474 0.95553 0.95926 1.21471 1.01095 0.95945 0.94860 1.22220 0.96808 0.97064 0.91179 1.61941 1.59678 1.02714 1.02423 1.22332 0.98457 0.98968 0.92507 1.22055 0.96336 0.89380 0.98926 1.21701 1.01450 0.97836 0.94301 0.94795 0.98243 0.90932 0.88396 0.89853 0.92663 0.91919 0.90526 0.95670 0.91522 0.91794 0.91668 0.96232 0.95645 0.91668 0.92496 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.07 10.02 60.07 0.60 1.67 16 2 N -0.68 -15.69 5.26 -115.24 -0.61 -16.30 16 3 C 0.21 5.05 1.63 -68.86 -0.11 4.94 16 4 H 0.03 0.78 8.00 -51.93 -0.42 0.36 16 5 C -0.60 -16.33 6.53 -34.44 -0.22 -16.56 16 6 H 0.04 1.22 6.74 -52.49 -0.35 0.87 16 7 C 0.04 1.00 5.39 -17.82 -0.10 0.90 16 8 N -0.90 -27.08 13.51 55.43 0.75 -26.34 16 9 Si 1.06 25.37 29.90 -169.99 -5.08 20.28 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C -0.11 -2.16 1.42 -90.50 -0.13 -2.29 16 14 C -0.10 -1.83 5.08 -26.65 -0.14 -1.96 16 15 C 0.05 0.89 5.46 -3.84 -0.02 0.86 16 16 N -0.54 -8.33 4.91 -242.97 -1.19 -9.52 16 17 C 0.03 0.31 9.59 60.07 0.58 0.89 16 18 C 0.06 0.93 5.46 -3.83 -0.02 0.91 16 19 C -0.11 -1.99 4.97 -26.65 -0.13 -2.13 16 20 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 21 H 0.00 -0.01 6.31 -51.93 -0.33 -0.34 16 22 H 0.07 1.76 7.09 -51.93 -0.37 1.39 16 23 H 0.30 6.23 7.28 -39.29 -0.29 5.94 16 24 H 0.29 8.76 6.40 -40.82 -0.26 8.50 16 25 H 0.06 1.18 6.41 -51.93 -0.33 0.85 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.08 1.57 6.73 -51.93 -0.35 1.23 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 32 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.89 8.12 -51.93 -0.42 0.46 16 35 H 0.06 0.95 6.91 -51.93 -0.36 0.59 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 273.61 15.07 4.12 4.12 Total: -1.00 -29.34 273.61 -7.77 -37.11 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.07 Total: 3.40 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 0.31 Total: -12.77 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -1.05 Total: -52.16 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.34 -7.77 -37.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259362101.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.082 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds