Wall clock time and date at job start Mon Mar 30 2020 02:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99806 * 2 1 4 4 H 1.08993 * 109.47095 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46638 * 299.99989 * 3 2 1 6 6 H 1.07998 * 119.99503 * 120.00218 * 5 3 2 7 7 C 1.37871 * 120.00434 * 299.99681 * 5 3 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 3 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53002 * 109.47088 * 59.99709 * 3 2 1 14 14 C 1.53121 * 109.52210 * 179.68144 * 13 3 2 15 15 C 1.53029 * 109.27879 * 182.44118 * 14 13 3 16 16 N 1.46849 * 109.52388 * 59.18129 * 15 14 13 17 17 C 1.46902 * 111.00389 * 174.15833 * 16 15 14 18 18 C 1.46844 * 111.19780 * 298.26041 * 16 15 14 19 19 C 1.53038 * 109.52573 * 61.73912 * 18 16 15 20 20 H 1.09006 * 109.47066 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47159 * 299.99780 * 1 2 3 22 22 H 1.08996 * 109.47162 * 60.00414 * 1 2 3 23 23 H 1.00898 * 111.00163 * 123.95374 * 2 1 3 24 24 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 25 25 H 1.08992 * 109.52276 * 299.87624 * 13 3 2 26 26 H 1.09004 * 109.50337 * 302.38752 * 14 13 3 27 27 H 1.09003 * 109.49965 * 62.50242 * 14 13 3 28 28 H 1.08996 * 109.46550 * 299.17038 * 15 14 13 29 29 H 1.09000 * 109.46248 * 179.19707 * 15 14 13 30 30 H 1.08999 * 109.47052 * 184.21393 * 17 16 15 31 31 H 1.09003 * 109.46626 * 304.21299 * 17 16 15 32 32 H 1.08995 * 109.47015 * 64.21010 * 17 16 15 33 33 H 1.09001 * 109.46299 * 301.71992 * 18 16 15 34 34 H 1.08999 * 109.46169 * 181.75133 * 18 16 15 35 35 H 1.08996 * 109.50224 * 180.87973 * 19 18 16 36 36 H 1.08996 * 109.53546 * 60.78445 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 3.0850 1.3424 -0.0005 5 6 1.5121 2.0950 -1.2305 6 1 0.9148 2.9893 -1.1314 7 6 1.8325 1.6153 -2.4828 8 7 2.5644 0.5293 -2.6035 9 14 1.2340 2.5124 -4.0080 10 1 -0.0860 1.9683 -4.4162 11 1 1.1017 3.9612 -3.7101 12 1 2.2106 2.3209 -5.1102 13 6 1.5048 2.1061 1.2492 14 6 2.0593 3.5334 1.2544 15 6 1.6155 4.2432 2.5354 16 7 2.1097 3.5026 3.7033 17 6 1.8215 4.2284 4.9476 18 6 1.5532 2.1444 3.7452 19 6 1.9952 1.3719 2.5002 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 1.8306 -0.5261 0.7813 24 1 2.8754 0.0635 -1.8115 25 1 0.4153 2.1375 1.2489 26 1 3.1481 3.5009 1.2148 27 1 1.6790 4.0746 0.3881 28 1 0.5269 4.2874 2.5677 29 1 2.0205 5.2550 2.5490 30 1 2.2632 3.6955 5.7896 31 1 2.2448 5.2311 4.8896 32 1 0.7426 4.2969 5.0865 33 1 0.4649 2.1985 3.7718 34 1 1.9131 1.6318 4.6373 35 1 1.5691 0.3689 2.5240 36 1 3.0829 1.3048 2.4799 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259362101.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:40 Heat of formation + Delta-G solvation = -25.639455 kcal Electronic energy + Delta-G solvation = -15181.126306 eV Core-core repulsion = 12891.701570 eV Total energy + Delta-G solvation = -2289.424736 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.38578 -37.76806 -34.16501 -33.51207 -31.77827 -29.11408 -26.72052 -26.26244 -24.05764 -23.85304 -21.84557 -20.52208 -18.52662 -16.98949 -16.74921 -16.03317 -15.59272 -15.49987 -15.43242 -15.00225 -14.66870 -14.00756 -13.60114 -13.33479 -13.25589 -13.07524 -12.65824 -12.49835 -12.43924 -12.19282 -12.13538 -11.92778 -11.51998 -11.42064 -11.20479 -10.40932 -10.31699 -9.31918 -8.91664 -8.25795 -6.11204 1.55165 1.63239 1.79498 2.66253 2.98829 3.37049 3.83750 3.92618 3.95921 4.04333 4.23038 4.40661 4.49519 4.52521 4.60707 4.63892 4.67701 4.73664 4.80936 4.84651 4.97808 4.99519 5.03933 5.15716 5.26048 5.34805 5.41006 5.66828 6.01757 6.09464 6.16844 6.34184 6.67267 6.82788 7.13081 7.77635 9.07224 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041069 B = 0.009187 C = 0.008108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.619855 B = 3047.011560 C = 3452.485500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.695 5.695 3 C 0.212 3.788 4 H -0.005 1.005 5 C -0.603 4.603 6 H 0.038 0.962 7 C -0.015 4.015 8 N -0.926 5.926 9 Si 1.103 2.897 10 H -0.281 1.281 11 H -0.275 1.275 12 H -0.288 1.288 13 C -0.097 4.097 14 C -0.093 4.093 15 C 0.064 3.936 16 N -0.557 5.557 17 C 0.026 3.974 18 C 0.066 3.934 19 C -0.108 4.108 20 H 0.056 0.944 21 H 0.016 0.984 22 H 0.040 0.960 23 H 0.316 0.684 24 H 0.277 0.723 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.026 0.974 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.432 5.035 12.940 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.324 5.324 3 C 0.105 3.895 4 H 0.013 0.987 5 C -0.642 4.642 6 H 0.056 0.944 7 C -0.218 4.218 8 N -0.563 5.563 9 Si 0.928 3.072 10 H -0.208 1.208 11 H -0.200 1.200 12 H -0.214 1.214 13 C -0.118 4.118 14 C -0.131 4.131 15 C -0.064 4.064 16 N -0.282 5.282 17 C -0.122 4.122 18 C -0.062 4.062 19 C -0.146 4.146 20 H 0.075 0.925 21 H 0.034 0.966 22 H 0.059 0.941 23 H 0.133 0.867 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.840 4.874 10.575 11.986 hybrid contribution -0.996 0.181 2.329 2.539 sum -3.837 5.055 12.904 14.380 Atomic orbital electron populations 1.21767 0.88889 0.99391 0.99120 1.60769 1.07691 1.16697 1.47287 1.19147 0.92721 0.85006 0.92658 0.98718 1.22022 1.37579 1.11775 0.92794 0.94352 1.26779 0.94636 0.96541 1.03819 1.70634 1.33151 1.17690 1.34794 0.83119 0.75999 0.75011 0.73087 1.20772 1.20046 1.21425 1.21607 0.98589 0.96065 0.95524 1.21371 0.99928 0.95585 0.96242 1.22062 0.96841 0.97459 0.89989 1.61922 1.59962 1.02957 1.03363 1.22409 0.99167 0.99392 0.91187 1.22016 0.96459 0.89393 0.98347 1.21602 1.00700 0.98238 0.94045 0.92543 0.96615 0.94060 0.86706 0.91189 0.93612 0.93417 0.92643 0.95537 0.89859 0.90226 0.90572 0.95555 0.95433 0.89300 0.91817 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.46 10.02 127.69 1.28 3.74 16 2 N -0.69 -32.27 5.26 -518.51 -2.73 -35.00 16 3 C 0.21 10.43 1.63 44.17 0.07 10.51 16 4 H -0.01 -0.28 8.00 -2.39 -0.02 -0.30 16 5 C -0.60 -33.26 6.53 25.60 0.17 -33.09 16 6 H 0.04 2.12 6.74 -2.91 -0.02 2.10 16 7 C -0.01 -0.85 5.39 84.65 0.46 -0.39 16 8 N -0.93 -57.28 13.51 21.45 0.29 -56.99 16 9 Si 1.10 51.46 29.90 68.60 2.05 53.52 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 13 C -0.10 -3.90 1.42 -10.71 -0.02 -3.92 16 14 C -0.09 -3.55 5.08 30.64 0.16 -3.40 16 15 C 0.06 1.95 5.46 86.32 0.47 2.43 16 16 N -0.56 -15.56 4.91 -922.61 -4.53 -20.09 16 17 C 0.03 0.54 9.59 127.69 1.22 1.76 16 18 C 0.07 1.82 5.46 86.33 0.47 2.29 16 19 C -0.11 -3.60 4.97 30.65 0.15 -3.44 16 20 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 21 H 0.02 0.61 6.31 -2.39 -0.02 0.59 16 22 H 0.04 1.99 7.09 -2.39 -0.02 1.98 16 23 H 0.32 12.98 7.28 -89.70 -0.65 12.32 16 24 H 0.28 17.30 6.40 -92.71 -0.59 16.71 16 25 H 0.05 1.92 6.41 -2.39 -0.02 1.91 16 26 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.05 2.31 6.73 -2.39 -0.02 2.30 16 28 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 2.25 8.09 -2.39 -0.02 2.23 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 32 H 0.03 0.51 8.14 -2.39 -0.02 0.50 16 33 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 2.08 8.12 -2.39 -0.02 2.06 16 35 H 0.06 2.02 6.91 -2.39 -0.02 2.00 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -63.41 273.61 0.08 -63.33 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.56 Total: 18.75 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 4.43 Total: -23.52 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -6.97 Total: -112.08 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.05 Total: 53.52 kcal Total: -63.41 0.08 -63.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259362101.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.695 kcal (2) G-P(sol) polarization free energy of solvation -63.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds