Wall clock time and date at job start Mon Mar 30 2020 02:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46897 * 110.99912 * 2 1 4 4 H 1.09004 * 109.47265 * 181.78528 * 3 2 1 5 5 C 1.50700 * 109.47464 * 61.78221 * 3 2 1 6 6 H 1.07995 * 120.00316 * 240.00058 * 5 3 2 7 7 C 1.37879 * 119.99992 * 59.99819 * 5 3 2 8 8 N 1.31509 * 120.00189 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99765 * 0.02562 * 7 5 3 10 10 H 1.48507 * 109.47193 * 90.00054 * 9 7 5 11 11 H 1.48506 * 109.46954 * 209.99928 * 9 7 5 12 12 H 1.48493 * 109.47254 * 330.00210 * 9 7 5 13 13 C 1.52995 * 109.47166 * 301.78293 * 3 2 1 14 14 H 1.09001 * 109.54091 * 63.55993 * 13 3 2 15 15 C 1.53119 * 109.50653 * 183.66123 * 13 3 2 16 16 C 1.53118 * 109.16759 * 177.59411 * 15 13 3 17 17 C 1.53043 * 109.27652 * 302.34697 * 16 15 13 18 18 N 1.46850 * 109.52337 * 59.17391 * 17 16 15 19 19 C 1.46901 * 110.99727 * 174.16218 * 18 17 16 20 20 C 1.46844 * 111.19799 * 298.26140 * 18 17 16 21 21 H 1.08993 * 109.47232 * 185.74805 * 1 2 3 22 22 H 1.09002 * 109.46508 * 305.74654 * 1 2 3 23 23 H 1.08995 * 109.46949 * 65.74578 * 1 2 3 24 24 H 1.00900 * 110.99762 * 236.04342 * 2 1 3 25 25 H 0.97003 * 120.00360 * 179.97438 * 8 7 5 26 26 H 1.09000 * 109.52435 * 297.50002 * 15 13 3 27 27 H 1.09003 * 109.52392 * 57.68445 * 15 13 3 28 28 H 1.08999 * 109.50195 * 62.28075 * 16 15 13 29 29 H 1.08994 * 109.50604 * 182.40102 * 16 15 13 30 30 H 1.09000 * 109.45609 * 299.15773 * 17 16 15 31 31 H 1.08999 * 109.46260 * 179.19305 * 17 16 15 32 32 H 1.09000 * 109.47025 * 184.21269 * 19 18 17 33 33 H 1.09001 * 109.46750 * 304.21405 * 19 18 17 34 34 H 1.08998 * 109.47093 * 64.21012 * 19 18 17 35 35 H 1.09003 * 109.45919 * 181.76164 * 20 18 17 36 36 H 1.09006 * 109.46286 * 301.73232 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 3.0847 1.3425 -0.0320 5 6 1.5484 2.0812 1.2519 6 1 0.9487 2.9765 1.1802 7 6 1.9049 1.5876 2.4890 8 7 1.5143 2.2066 3.5815 9 14 2.9428 0.0394 2.6130 10 1 4.3816 0.4072 2.6210 11 1 2.6091 -0.6810 3.8680 12 1 2.6629 -0.8388 1.4488 13 6 1.4690 2.1198 -1.2262 14 1 0.3841 2.2045 -1.1635 15 6 2.0889 3.5190 -1.2763 16 6 1.6037 4.2389 -2.5376 17 6 1.9799 3.4106 -3.7684 18 7 1.3622 2.0818 -3.6732 19 6 1.5872 1.3075 -4.9011 20 6 1.8491 1.3531 -2.4949 21 1 -0.3633 -1.0224 0.1029 22 1 -0.3632 0.6004 0.8341 23 1 -0.3633 0.4221 -0.9369 24 1 1.8306 -0.5262 -0.7813 25 1 1.7648 1.8592 4.4518 26 1 1.7851 4.0838 -0.3950 27 1 3.1754 3.4354 -1.2998 28 1 0.5210 4.3568 -2.4956 29 1 2.0750 5.2196 -2.6010 30 1 3.0637 3.3048 -3.8173 31 1 1.6233 3.9134 -4.6673 32 1 1.0569 0.3576 -4.8340 33 1 1.2175 1.8703 -5.7583 34 1 2.6542 1.1203 -5.0222 35 1 1.3974 0.3614 -2.4690 36 1 2.9335 1.2569 -2.5498 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259421767.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:46 Heat of formation + Delta-G solvation = -15.131287 kcal Electronic energy + Delta-G solvation = -15272.258790 eV Core-core repulsion = 12983.289723 eV Total energy + Delta-G solvation = -2288.969067 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.40032 -37.52183 -34.19240 -34.15279 -31.57000 -29.11382 -27.44545 -26.07675 -24.43025 -23.53359 -21.41352 -20.33528 -18.62821 -17.11176 -16.61344 -16.24883 -15.79668 -15.46147 -15.17934 -14.85153 -14.62852 -14.32355 -13.75527 -13.46898 -13.15867 -13.06910 -12.72185 -12.56129 -12.33982 -12.17490 -11.96646 -11.75057 -11.52101 -11.33732 -11.17911 -10.80853 -10.62623 -9.24452 -8.60960 -8.16774 -6.24769 1.51483 1.58433 1.94462 2.64968 3.02624 3.20776 3.84742 3.99053 4.03392 4.04237 4.24046 4.47513 4.56748 4.59794 4.64741 4.70505 4.74308 4.84531 4.89343 4.89822 4.94967 5.02086 5.12043 5.18538 5.32054 5.42333 5.48908 5.67613 5.70705 6.13038 6.14070 6.22336 6.54446 6.77322 7.08958 7.50799 8.96873 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040291 B = 0.010216 C = 0.009130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.774168 B = 2740.191123 C = 3065.999772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.690 5.690 3 C 0.193 3.807 4 H 0.032 0.968 5 C -0.498 4.498 6 H 0.027 0.973 7 C 0.021 3.979 8 N -0.957 5.957 9 Si 0.922 3.078 10 H -0.302 1.302 11 H -0.319 1.319 12 H -0.157 1.157 13 C -0.091 4.091 14 H 0.051 0.949 15 C -0.105 4.105 16 C -0.112 4.112 17 C 0.061 3.939 18 N -0.558 5.558 19 C 0.026 3.974 20 C 0.069 3.931 21 H 0.065 0.935 22 H 0.039 0.961 23 H 0.021 0.979 24 H 0.328 0.672 25 H 0.258 0.742 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.032 0.968 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.074 0.926 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.668 -2.743 -17.099 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.321 5.321 3 C 0.084 3.916 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.045 0.955 7 C -0.177 4.177 8 N -0.598 5.598 9 Si 0.749 3.251 10 H -0.230 1.230 11 H -0.247 1.247 12 H -0.078 1.078 13 C -0.112 4.112 14 H 0.069 0.931 15 C -0.143 4.143 16 C -0.150 4.150 17 C -0.067 4.067 18 N -0.282 5.282 19 C -0.121 4.121 20 C -0.059 4.059 21 H 0.084 0.916 22 H 0.058 0.942 23 H 0.040 0.960 24 H 0.147 0.853 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.199 -2.778 -16.240 16.520 hybrid contribution 0.915 0.055 0.157 0.930 sum 2.113 -2.723 -16.084 16.449 Atomic orbital electron populations 1.21887 0.88730 1.00399 0.99382 1.61289 1.07969 1.15590 1.47299 1.19421 0.94523 0.85416 0.92220 0.95048 1.21001 1.32700 1.09510 0.90451 0.95479 1.25859 0.96607 1.00138 0.95048 1.70119 1.48548 1.42676 0.98421 0.86397 0.76248 0.82838 0.79662 1.23035 1.24743 1.07782 1.21541 0.99713 0.95697 0.94205 0.93055 1.21434 0.99292 0.96062 0.97499 1.21586 1.01138 0.98513 0.93757 1.22096 0.96483 0.89460 0.98670 1.61893 1.59262 1.03794 1.03259 1.22396 0.99529 0.98655 0.91549 1.22055 0.97086 0.97032 0.89742 0.91635 0.94179 0.96022 0.85328 0.93371 0.94015 0.93076 0.92429 0.90333 0.94940 0.89176 0.91060 0.90122 0.95447 0.90788 0.95193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.73 9.79 127.69 1.25 2.99 16 2 N -0.69 -27.15 3.20 -518.53 -1.66 -28.81 16 3 C 0.19 8.48 1.51 44.17 0.07 8.54 16 4 H 0.03 1.42 7.57 -2.38 -0.02 1.40 16 5 C -0.50 -27.86 7.13 25.60 0.18 -27.68 16 6 H 0.03 1.71 7.21 -2.91 -0.02 1.68 16 7 C 0.02 1.22 5.47 84.66 0.46 1.69 16 8 N -0.96 -61.60 13.96 21.45 0.30 -61.31 16 9 Si 0.92 45.23 26.94 68.60 1.85 47.08 16 10 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 11 H -0.32 -16.29 7.11 99.48 0.71 -15.58 16 12 H -0.16 -6.74 5.17 99.48 0.51 -6.23 16 13 C -0.09 -3.43 1.34 -10.74 -0.01 -3.44 16 14 H 0.05 2.16 6.71 -2.39 -0.02 2.15 16 15 C -0.10 -3.84 5.03 30.67 0.15 -3.69 16 16 C -0.11 -3.23 6.09 30.65 0.19 -3.04 16 17 C 0.06 1.50 5.46 86.33 0.47 1.97 16 18 N -0.56 -14.89 4.91 -922.56 -4.53 -19.42 16 19 C 0.03 0.53 9.59 127.69 1.22 1.75 16 20 C 0.07 2.08 4.25 86.33 0.37 2.44 16 21 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 22 H 0.04 1.85 6.96 -2.39 -0.02 1.83 16 23 H 0.02 0.77 6.40 -2.39 -0.02 0.75 16 24 H 0.33 10.75 7.26 -89.69 -0.65 10.10 16 25 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 26 H 0.04 1.80 6.94 -2.39 -0.02 1.78 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 1.83 8.09 -2.39 -0.02 1.81 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 34 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.07 2.12 6.45 -2.39 -0.02 2.10 16 36 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -66.35 269.19 0.50 -65.85 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.19 Total: 15.08 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 4.35 Total: -18.47 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -5.89 Total: -109.54 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.85 Total: 47.08 kcal Total: -66.35 0.50 -65.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259421767.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.717 kcal (2) G-P(sol) polarization free energy of solvation -66.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds