Wall clock time and date at job start Mon Mar 30 2020 02:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00245 * 2 1 4 4 C 1.46902 * 110.99616 * 123.95276 * 2 1 3 5 5 H 1.09001 * 109.46847 * 176.84876 * 4 2 1 6 6 C 1.50694 * 109.47160 * 56.84664 * 4 2 1 7 7 H 1.07995 * 120.00243 * 245.32326 * 6 4 2 8 8 C 1.37885 * 119.99899 * 65.32513 * 6 4 2 9 9 N 1.31510 * 119.99799 * 186.41959 * 8 6 4 10 10 Si 1.86800 * 120.00084 * 6.42128 * 8 6 4 11 11 H 1.48498 * 109.46926 * 84.72308 * 10 8 6 12 12 H 1.48493 * 109.46899 * 204.72715 * 10 8 6 13 13 H 1.48500 * 109.46749 * 324.72101 * 10 8 6 14 14 C 1.52997 * 109.46862 * 296.84360 * 4 2 1 15 15 H 1.08998 * 110.27911 * 306.31607 * 14 4 2 16 16 C 1.54599 * 110.30608 * 184.12363 * 14 4 2 17 17 C 1.54938 * 102.92401 * 219.12904 * 16 14 4 18 18 N 1.48531 * 103.22518 * 37.41603 * 17 16 14 19 19 C 1.46897 * 110.99916 * 200.28159 * 18 17 16 20 20 C 1.47907 * 105.81999 * 320.79209 * 18 17 16 21 21 H 1.09000 * 109.47087 * 308.39340 * 1 2 3 22 22 H 1.09007 * 109.46791 * 68.39119 * 1 2 3 23 23 H 1.08996 * 109.47180 * 188.38850 * 1 2 3 24 24 H 1.09003 * 109.47073 * 187.89129 * 3 2 1 25 25 H 1.09004 * 109.46551 * 307.88834 * 3 2 1 26 26 H 1.08996 * 109.47339 * 67.88455 * 3 2 1 27 27 H 0.97001 * 119.99961 * 180.02562 * 9 8 6 28 28 H 1.09006 * 110.72376 * 337.48940 * 16 14 4 29 29 H 1.09004 * 110.72535 * 100.76949 * 16 14 4 30 30 H 1.09000 * 110.66353 * 278.97957 * 17 16 14 31 31 H 1.08997 * 110.66533 * 155.85161 * 17 16 14 32 32 H 1.09004 * 109.46909 * 177.39745 * 19 18 17 33 33 H 1.09005 * 109.47058 * 297.39311 * 19 18 17 34 34 H 1.08997 * 109.47575 * 57.39328 * 19 18 17 35 35 H 1.08998 * 109.91665 * 265.97368 * 20 18 17 36 36 H 1.09001 * 109.91346 * 144.68400 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 3.0835 -0.7969 1.0824 6 6 1.4500 -2.1701 1.0933 7 1 0.7886 -2.5174 1.8732 8 6 1.7953 -3.0114 0.0568 9 7 1.2230 -4.1904 -0.0515 10 14 3.0761 -2.4764 -1.1933 11 1 4.4331 -2.7824 -0.6735 12 1 2.8582 -3.2057 -2.4682 13 1 2.9551 -1.0156 -1.4317 14 6 1.5700 -0.0946 2.4450 15 1 1.8615 0.9556 2.4426 16 6 2.1994 -0.8256 3.6531 17 6 1.0577 -0.8107 4.7004 18 7 -0.1615 -1.0148 3.8769 19 6 -1.3620 -0.5625 4.5926 20 6 0.0486 -0.2266 2.6432 21 1 -0.3633 0.6382 0.8054 22 1 -0.3633 0.3785 -0.9555 23 1 -0.3633 -1.0166 0.1499 24 1 3.0761 1.3458 -0.1411 25 1 1.5365 1.9367 -0.8111 26 1 1.7646 1.8493 0.9520 27 1 1.4662 -4.7825 -0.7804 28 1 2.4667 -1.8487 3.3884 29 1 3.0689 -0.2820 4.0226 30 1 1.0189 0.1502 5.2135 31 1 1.1802 -1.6248 5.4147 32 1 -2.2343 -0.6804 3.9497 33 1 -1.4929 -1.1587 5.4956 34 1 -1.2495 0.4873 4.8635 35 1 -0.3987 0.7613 2.7530 36 1 -0.3933 -0.7446 1.7919 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259474095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:10 Heat of formation + Delta-G solvation = 37.905202 kcal Electronic energy + Delta-G solvation = -15612.808455 eV Core-core repulsion = 13326.139222 eV Total energy + Delta-G solvation = -2286.669233 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.19953 -36.20047 -32.28101 -31.56176 -28.75079 -27.46066 -26.67104 -24.80503 -23.19235 -20.73074 -20.43094 -18.73946 -16.79624 -15.37729 -15.09355 -14.33185 -14.12519 -13.79712 -13.61812 -13.17842 -13.01175 -12.55402 -11.95993 -11.81763 -11.53394 -11.23659 -10.95865 -10.86235 -10.62241 -10.52376 -10.36927 -10.19152 -9.81502 -9.67128 -9.55821 -8.89157 -8.35496 -7.81011 -6.99734 -5.90313 -3.93589 3.52183 3.60939 3.85954 4.59901 4.73863 5.02597 5.34116 5.37108 5.55281 5.61107 5.75209 5.79449 5.81515 5.98264 5.99386 6.07984 6.12941 6.24390 6.31771 6.39422 6.40772 6.46051 6.49858 6.66761 6.92788 6.99773 7.08259 7.25850 7.50337 7.62887 7.75494 8.13801 8.34122 8.74189 9.23258 9.76339 11.19396 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030749 B = 0.013074 C = 0.011445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.378454 B = 2141.169901 C = 2445.830315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.536 5.536 3 C 0.019 3.981 4 C 0.186 3.814 5 H 0.038 0.962 6 C -0.511 4.511 7 H 0.092 0.908 8 C 0.087 3.913 9 N -0.897 5.897 10 Si 0.866 3.134 11 H -0.293 1.293 12 H -0.301 1.301 13 H -0.224 1.224 14 C -0.116 4.116 15 H 0.049 0.951 16 C -0.111 4.111 17 C 0.036 3.964 18 N -0.511 5.511 19 C 0.019 3.981 20 C 0.035 3.965 21 H 0.016 0.984 22 H 0.036 0.964 23 H 0.094 0.906 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.016 0.984 27 H 0.260 0.740 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.016 0.984 35 H 0.017 0.983 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.828 9.443 5.369 10.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.260 5.260 3 C -0.130 4.130 4 C 0.080 3.920 5 H 0.055 0.945 6 C -0.549 4.549 7 H 0.110 0.890 8 C -0.117 4.117 9 N -0.534 5.534 10 Si 0.693 3.307 11 H -0.220 1.220 12 H -0.229 1.229 13 H -0.146 1.146 14 C -0.136 4.136 15 H 0.068 0.932 16 C -0.149 4.149 17 C -0.092 4.092 18 N -0.234 5.234 19 C -0.130 4.130 20 C -0.091 4.091 21 H 0.035 0.965 22 H 0.055 0.945 23 H 0.112 0.888 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.783 8.524 4.699 9.765 hybrid contribution 0.492 1.529 0.266 1.628 sum -0.291 10.053 4.965 11.216 Atomic orbital electron populations 1.22588 0.89166 1.02812 0.97716 1.62962 1.07372 1.10283 1.45367 1.22356 1.00019 0.91941 0.98655 1.19787 0.95440 0.93734 0.83020 0.94454 1.21025 1.30732 0.92948 1.10192 0.88984 1.24950 0.95547 0.94231 0.96961 1.69967 1.42057 1.09397 1.32016 0.87033 0.80936 0.82315 0.80411 1.21989 1.22859 1.14585 1.22532 0.94631 0.97818 0.98657 0.93234 1.22494 0.95616 1.02998 0.93841 1.23198 0.91346 0.98494 0.96182 1.64838 1.01482 1.52455 1.04665 1.22470 0.94585 0.97099 0.98884 1.23691 0.96895 0.94153 0.94382 0.96544 0.94492 0.88781 0.92838 0.93268 0.96577 0.93024 0.88617 0.92897 0.95379 0.90909 0.91714 0.91995 0.96600 0.96524 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 7.77 60.07 0.47 0.97 16 2 N -0.54 -11.46 2.75 -244.58 -0.67 -12.13 16 3 C 0.02 0.34 9.35 60.07 0.56 0.90 16 4 C 0.19 4.18 1.23 -68.87 -0.08 4.10 16 5 H 0.04 0.88 7.08 -51.93 -0.37 0.52 16 6 C -0.51 -13.50 5.56 -34.44 -0.19 -13.69 16 7 H 0.09 2.67 6.93 -52.49 -0.36 2.31 16 8 C 0.09 2.44 5.46 -17.82 -0.10 2.35 16 9 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 10 Si 0.87 21.79 26.80 -169.99 -4.56 17.23 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16 13 H -0.22 -5.39 5.84 56.52 0.33 -5.06 16 14 C -0.12 -2.26 2.55 -89.26 -0.23 -2.49 16 15 H 0.05 0.92 6.09 -51.93 -0.32 0.60 16 16 C -0.11 -2.05 6.40 -24.87 -0.16 -2.21 16 17 C 0.04 0.61 6.56 -1.90 -0.01 0.59 16 18 N -0.51 -9.56 5.40 -238.71 -1.29 -10.85 16 19 C 0.02 0.28 9.40 60.06 0.56 0.85 16 20 C 0.04 0.68 3.49 -2.75 -0.01 0.67 16 21 H 0.02 0.30 5.30 -51.93 -0.28 0.03 16 22 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 23 H 0.09 2.16 5.62 -51.93 -0.29 1.87 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 26 H 0.02 0.27 6.01 -51.93 -0.31 -0.04 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.10 2.02 7.03 -51.93 -0.37 1.65 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.03 0.43 7.96 -51.93 -0.41 0.02 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.02 0.22 8.00 -51.93 -0.42 -0.19 16 35 H 0.02 0.30 7.33 -51.93 -0.38 -0.08 16 36 H 0.12 2.55 3.54 -51.93 -0.18 2.36 16 LS Contribution 262.90 15.07 3.96 3.96 Total: -1.00 -29.23 262.90 -6.82 -36.05 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.85 Total: 0.04 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 0.81 Total: -7.95 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -1.19 Total: -49.33 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.56 Total: 17.23 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.23 -6.82 -36.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259474095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.960 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds