Wall clock time and date at job start Mon Mar 30 2020 02:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00245 * 2 1 4 4 C 1.46902 * 110.99616 * 123.95276 * 2 1 3 5 5 H 1.09001 * 109.46847 * 176.84876 * 4 2 1 6 6 C 1.50694 * 109.47160 * 56.84664 * 4 2 1 7 7 H 1.07995 * 120.00243 * 245.32326 * 6 4 2 8 8 C 1.37885 * 119.99899 * 65.32513 * 6 4 2 9 9 N 1.31510 * 119.99799 * 186.41959 * 8 6 4 10 10 Si 1.86800 * 120.00084 * 6.42128 * 8 6 4 11 11 H 1.48498 * 109.46926 * 84.72308 * 10 8 6 12 12 H 1.48493 * 109.46899 * 204.72715 * 10 8 6 13 13 H 1.48500 * 109.46749 * 324.72101 * 10 8 6 14 14 C 1.52997 * 109.46862 * 296.84360 * 4 2 1 15 15 H 1.08998 * 110.27911 * 306.31607 * 14 4 2 16 16 C 1.54599 * 110.30608 * 184.12363 * 14 4 2 17 17 C 1.54938 * 102.92401 * 219.12904 * 16 14 4 18 18 N 1.48531 * 103.22518 * 37.41603 * 17 16 14 19 19 C 1.46897 * 110.99916 * 200.28159 * 18 17 16 20 20 C 1.47907 * 105.81999 * 320.79209 * 18 17 16 21 21 H 1.09000 * 109.47087 * 308.39340 * 1 2 3 22 22 H 1.09007 * 109.46791 * 68.39119 * 1 2 3 23 23 H 1.08996 * 109.47180 * 188.38850 * 1 2 3 24 24 H 1.09003 * 109.47073 * 187.89129 * 3 2 1 25 25 H 1.09004 * 109.46551 * 307.88834 * 3 2 1 26 26 H 1.08996 * 109.47339 * 67.88455 * 3 2 1 27 27 H 0.97001 * 119.99961 * 180.02562 * 9 8 6 28 28 H 1.09006 * 110.72376 * 337.48940 * 16 14 4 29 29 H 1.09004 * 110.72535 * 100.76949 * 16 14 4 30 30 H 1.09000 * 110.66353 * 278.97957 * 17 16 14 31 31 H 1.08997 * 110.66533 * 155.85161 * 17 16 14 32 32 H 1.09004 * 109.46909 * 177.39745 * 19 18 17 33 33 H 1.09005 * 109.47058 * 297.39311 * 19 18 17 34 34 H 1.08997 * 109.47575 * 57.39328 * 19 18 17 35 35 H 1.08998 * 109.91665 * 265.97368 * 20 18 17 36 36 H 1.09001 * 109.91346 * 144.68400 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 3.0835 -0.7969 1.0824 6 6 1.4500 -2.1701 1.0933 7 1 0.7886 -2.5174 1.8732 8 6 1.7953 -3.0114 0.0568 9 7 1.2230 -4.1904 -0.0515 10 14 3.0761 -2.4764 -1.1933 11 1 4.4331 -2.7824 -0.6735 12 1 2.8582 -3.2057 -2.4682 13 1 2.9551 -1.0156 -1.4317 14 6 1.5700 -0.0946 2.4450 15 1 1.8615 0.9556 2.4426 16 6 2.1994 -0.8256 3.6531 17 6 1.0577 -0.8107 4.7004 18 7 -0.1615 -1.0148 3.8769 19 6 -1.3620 -0.5625 4.5926 20 6 0.0486 -0.2266 2.6432 21 1 -0.3633 0.6382 0.8054 22 1 -0.3633 0.3785 -0.9555 23 1 -0.3633 -1.0166 0.1499 24 1 3.0761 1.3458 -0.1411 25 1 1.5365 1.9367 -0.8111 26 1 1.7646 1.8493 0.9520 27 1 1.4662 -4.7825 -0.7804 28 1 2.4667 -1.8487 3.3884 29 1 3.0689 -0.2820 4.0226 30 1 1.0189 0.1502 5.2135 31 1 1.1802 -1.6248 5.4147 32 1 -2.2343 -0.6804 3.9497 33 1 -1.4929 -1.1587 5.4956 34 1 -1.2495 0.4873 4.8635 35 1 -0.3987 0.7613 2.7530 36 1 -0.3933 -0.7446 1.7919 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259474095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:09 Heat of formation + Delta-G solvation = 16.920419 kcal Electronic energy + Delta-G solvation = -15613.718423 eV Core-core repulsion = 13326.139222 eV Total energy + Delta-G solvation = -2287.579201 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.74596 -37.73494 -34.31886 -33.09635 -30.29012 -29.13737 -28.24032 -26.24852 -24.94382 -22.22557 -21.91890 -20.47327 -18.70425 -16.96963 -16.63567 -15.98791 -15.93586 -15.27580 -15.09603 -14.78323 -14.69625 -14.06819 -13.66129 -13.25330 -12.97342 -12.81995 -12.59859 -12.44431 -12.29877 -12.10307 -11.90861 -11.76497 -11.56232 -11.41951 -11.33659 -10.83705 -10.49947 -9.16325 -8.62442 -8.07994 -6.11004 1.49259 1.55082 1.83389 2.63998 3.18458 3.27397 3.69257 3.89358 3.99386 4.12883 4.41788 4.50871 4.53207 4.59007 4.61569 4.68854 4.72743 4.77887 4.85892 4.95039 4.99678 5.00441 5.09784 5.17639 5.29025 5.39083 5.51120 5.57466 5.77514 6.14660 6.29581 6.32279 6.60521 6.81326 7.07988 7.60417 9.05424 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030749 B = 0.013074 C = 0.011445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.378454 B = 2141.169901 C = 2445.830315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.558 5.558 3 C 0.020 3.980 4 C 0.190 3.810 5 H 0.030 0.970 6 C -0.486 4.486 7 H 0.057 0.943 8 C 0.029 3.971 9 N -0.950 5.950 10 Si 0.923 3.077 11 H -0.294 1.294 12 H -0.314 1.314 13 H -0.202 1.202 14 C -0.114 4.114 15 H 0.072 0.928 16 C -0.112 4.112 17 C 0.042 3.958 18 N -0.545 5.545 19 C 0.020 3.980 20 C 0.041 3.959 21 H 0.035 0.965 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.031 0.969 27 H 0.256 0.744 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 12.337 6.031 13.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.282 5.282 3 C -0.128 4.128 4 C 0.084 3.916 5 H 0.048 0.952 6 C -0.524 4.524 7 H 0.075 0.925 8 C -0.169 4.169 9 N -0.591 5.591 10 Si 0.750 3.250 11 H -0.221 1.221 12 H -0.242 1.242 13 H -0.123 1.123 14 C -0.134 4.134 15 H 0.090 0.910 16 C -0.150 4.150 17 C -0.086 4.086 18 N -0.269 5.269 19 C -0.128 4.128 20 C -0.085 4.085 21 H 0.053 0.947 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.277 11.454 5.376 12.656 hybrid contribution 0.271 0.658 0.147 0.726 sum -0.006 12.111 5.523 13.311 Atomic orbital electron populations 1.22443 0.88557 1.00959 0.99244 1.62697 1.08043 1.12745 1.44742 1.22408 1.00343 0.89768 1.00248 1.19577 0.94636 0.92019 0.85387 0.95202 1.21143 1.28275 0.94988 1.08012 0.92527 1.25670 0.97643 0.94347 0.99239 1.70109 1.44642 1.11082 1.33278 0.86155 0.78460 0.82752 0.77657 1.22136 1.24225 1.12348 1.22481 0.94993 0.98685 0.97267 0.91004 1.22445 0.97303 1.01050 0.94211 1.23180 0.89815 0.99957 0.95610 1.64752 1.03284 1.53539 1.05354 1.22495 0.93064 0.98279 0.98975 1.23470 0.96503 0.94551 0.94023 0.94706 0.92880 0.92610 0.92316 0.91318 0.95105 0.93513 0.92321 0.90188 0.92904 0.90489 0.91895 0.90732 0.94890 0.94781 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.38 7.77 127.69 0.99 2.38 16 2 N -0.56 -22.57 2.75 -927.72 -2.55 -25.12 16 3 C 0.02 0.65 9.35 127.69 1.19 1.84 16 4 C 0.19 8.33 1.23 44.17 0.05 8.38 16 5 H 0.03 1.36 7.08 -2.39 -0.02 1.35 16 6 C -0.49 -26.19 5.56 25.60 0.14 -26.05 16 7 H 0.06 3.42 6.93 -2.91 -0.02 3.40 16 8 C 0.03 1.66 5.46 84.66 0.46 2.12 16 9 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 10 Si 0.92 45.61 26.80 68.60 1.84 47.45 16 11 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 12 H -0.31 -16.07 7.11 99.48 0.71 -15.37 16 13 H -0.20 -9.18 5.84 99.48 0.58 -8.60 16 14 C -0.11 -4.18 2.55 -9.92 -0.03 -4.21 16 15 H 0.07 2.35 6.09 -2.39 -0.01 2.33 16 16 C -0.11 -3.91 6.40 31.80 0.20 -3.71 16 17 C 0.04 1.32 6.56 86.65 0.57 1.89 16 18 N -0.54 -19.63 5.40 -909.16 -4.91 -24.55 16 19 C 0.02 0.57 9.40 127.69 1.20 1.77 16 20 C 0.04 1.52 3.49 86.44 0.30 1.82 16 21 H 0.03 1.20 5.30 -2.39 -0.01 1.19 16 22 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 23 H 0.06 2.59 5.62 -2.39 -0.01 2.58 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 1.92 8.10 -2.39 -0.02 1.90 16 26 H 0.03 0.89 6.01 -2.39 -0.01 0.88 16 27 H 0.26 15.52 8.31 -92.71 -0.77 14.74 16 28 H 0.06 2.49 7.03 -2.38 -0.02 2.47 16 29 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.05 1.42 7.96 -2.39 -0.02 1.40 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.03 0.81 8.00 -2.39 -0.02 0.79 16 35 H 0.03 1.12 7.33 -2.39 -0.02 1.10 16 36 H 0.09 3.81 3.54 -2.39 -0.01 3.80 16 Total: -1.00 -64.17 262.90 0.68 -63.48 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.92 Total: 12.09 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 5.09 Total: -13.76 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -7.16 Total: -109.26 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.84 Total: 47.45 kcal Total: -64.17 0.68 -63.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259474095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.405 kcal (2) G-P(sol) polarization free energy of solvation -64.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds