Wall clock time and date at job start Mon Mar 30 2020 02:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 111.00348 * 2 1 4 4 C 1.46899 * 110.99534 * 123.95533 * 2 1 3 5 5 H 1.09004 * 109.46794 * 193.27279 * 4 2 1 6 6 C 1.50693 * 109.47601 * 73.27709 * 4 2 1 7 7 H 1.08001 * 120.00222 * 240.00011 * 6 4 2 8 8 C 1.37882 * 120.00255 * 59.71833 * 6 4 2 9 9 N 1.31510 * 119.99770 * 0.27762 * 8 6 4 10 10 Si 1.86795 * 120.00125 * 180.28170 * 8 6 4 11 11 H 1.48507 * 109.47283 * 59.99916 * 10 8 6 12 12 H 1.48494 * 109.47194 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46990 * 299.99852 * 10 8 6 14 14 C 1.53002 * 109.47384 * 313.27080 * 4 2 1 15 15 H 1.09000 * 110.28690 * 52.73430 * 14 4 2 16 16 C 1.54256 * 110.32421 * 174.86493 * 14 4 2 17 17 C 1.54377 * 105.06115 * 118.89689 * 16 14 4 18 18 N 1.48559 * 104.59365 * 23.85355 * 17 16 14 19 19 C 1.46907 * 110.99906 * 200.95971 * 18 17 16 20 20 C 1.48560 * 104.22168 * 320.51151 * 18 17 16 21 21 H 1.09003 * 109.47154 * 296.05274 * 1 2 3 22 22 H 1.09006 * 109.47017 * 56.04438 * 1 2 3 23 23 H 1.08994 * 109.47728 * 176.04348 * 1 2 3 24 24 H 1.08999 * 109.47026 * 175.70118 * 3 2 1 25 25 H 1.09002 * 109.47065 * 295.70432 * 3 2 1 26 26 H 1.09002 * 109.47182 * 55.70109 * 3 2 1 27 27 H 0.96998 * 120.00147 * 180.02562 * 9 8 6 28 28 H 1.08998 * 110.32589 * 237.79354 * 16 14 4 29 29 H 1.09003 * 110.32705 * 0.02562 * 16 14 4 30 30 H 1.09002 * 110.41463 * 142.62841 * 17 16 14 31 31 H 1.09001 * 110.41368 * 264.95463 * 17 16 14 32 32 H 1.09001 * 109.46897 * 60.12026 * 19 18 17 33 33 H 1.08998 * 109.47275 * 180.12573 * 19 18 17 34 34 H 1.09000 * 109.47084 * 300.12597 * 19 18 17 35 35 H 1.08998 * 110.41274 * 280.70767 * 20 18 17 36 36 H 1.09001 * 110.41073 * 158.26205 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 1 3.0593 -0.5596 1.2534 6 6 1.7937 -2.2384 0.8882 7 1 1.1970 -2.8251 1.5710 8 6 2.3661 -2.8356 -0.2149 9 7 3.0925 -2.1213 -1.0465 10 14 2.1096 -4.6591 -0.5283 11 1 0.6587 -4.9356 -0.6831 12 1 2.8232 -5.0533 -1.7695 13 1 2.6424 -5.4381 0.6182 14 6 1.2550 -0.3587 2.4131 15 1 0.1778 -0.4385 2.2667 16 6 1.7017 -1.2410 3.5969 17 6 2.3169 -0.2604 4.6183 18 7 1.6914 1.0496 4.3031 19 6 2.5017 2.1588 4.8240 20 6 1.6379 1.0808 2.8188 21 1 -0.3633 0.4514 0.9233 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3634 -1.0251 -0.0709 24 1 3.0824 1.3433 0.0770 25 1 1.7096 1.8703 -0.9260 26 1 1.5851 1.9182 0.8490 27 1 3.4949 -2.5413 -1.8228 28 1 0.8436 -1.7527 4.0327 29 1 2.4488 -1.9641 3.2694 30 1 2.0689 -0.5653 5.6350 31 1 3.3982 -0.2079 4.4912 32 1 3.4927 2.1287 4.3712 33 1 2.0199 3.1060 4.5814 34 1 2.5936 2.0647 5.9060 35 1 2.6127 1.3449 2.4087 36 1 0.8785 1.7858 2.4805 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259474098.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:13 Heat of formation + Delta-G solvation = 22.240942 kcal Electronic energy + Delta-G solvation = -15371.216726 eV Core-core repulsion = 13083.868240 eV Total energy + Delta-G solvation = -2287.348486 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.98093 -36.03833 -32.34234 -31.54568 -28.35677 -27.45310 -26.39171 -24.67395 -23.33648 -20.70175 -20.54118 -18.72315 -16.11776 -15.79378 -15.11918 -14.27669 -14.12143 -13.96450 -13.44287 -13.09481 -12.92347 -12.54898 -11.88152 -11.50945 -11.36716 -11.12940 -10.94039 -10.90826 -10.72016 -10.56148 -10.52674 -10.38609 -10.11070 -9.78050 -9.36775 -8.85462 -8.33622 -8.14886 -6.63443 -5.82067 -3.93821 3.37515 3.42768 3.45063 4.44715 4.53213 5.20070 5.30907 5.32334 5.56332 5.67828 5.73193 5.79609 5.89043 5.97941 6.06230 6.21802 6.24902 6.27666 6.44497 6.46022 6.53859 6.56395 6.75353 6.79868 6.91449 6.98084 7.03607 7.34883 7.38884 7.54483 7.95831 8.26952 8.61008 8.77051 9.16843 9.73097 11.22855 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034332 B = 0.010840 C = 0.009213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.359176 B = 2582.329337 C = 3038.480500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.503 5.503 3 C 0.021 3.979 4 C 0.228 3.772 5 H 0.035 0.965 6 C -0.525 4.525 7 H 0.055 0.945 8 C 0.084 3.916 9 N -0.851 5.851 10 Si 0.880 3.120 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.279 1.279 14 C -0.118 4.118 15 H 0.071 0.929 16 C -0.107 4.107 17 C 0.031 3.969 18 N -0.523 5.523 19 C 0.015 3.985 20 C 0.036 3.964 21 H 0.008 0.992 22 H 0.036 0.964 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.041 0.959 26 H 0.011 0.989 27 H 0.255 0.745 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.025 0.975 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.485 5.496 7.030 9.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.225 5.225 3 C -0.128 4.128 4 C 0.122 3.878 5 H 0.053 0.947 6 C -0.563 4.563 7 H 0.073 0.927 8 C -0.123 4.123 9 N -0.486 5.486 10 Si 0.708 3.292 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.205 1.205 14 C -0.139 4.139 15 H 0.090 0.910 16 C -0.145 4.145 17 C -0.097 4.097 18 N -0.247 5.247 19 C -0.134 4.134 20 C -0.091 4.091 21 H 0.026 0.974 22 H 0.055 0.945 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.029 0.971 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.721 5.346 6.652 8.706 hybrid contribution 0.416 -0.524 0.088 0.675 sum -1.305 4.822 6.740 8.389 Atomic orbital electron populations 1.22189 0.90428 1.01401 0.97122 1.62503 1.05050 1.09297 1.45630 1.22532 0.99892 0.92066 0.98284 1.19416 0.93458 0.93209 0.81698 0.94733 1.20868 1.33538 0.92142 1.09799 0.92706 1.24927 0.94709 0.96725 0.95894 1.70058 1.31237 1.34708 1.12600 0.86901 0.78260 0.86684 0.77404 1.20437 1.21514 1.20472 1.22741 1.01572 0.91483 0.98110 0.91028 1.22262 1.00706 0.97486 0.94094 1.23157 0.96683 0.90218 0.99674 1.65401 1.46233 1.02014 1.11043 1.22458 0.95621 0.95277 1.00070 1.23532 0.99813 0.99155 0.86614 0.97419 0.94478 0.91417 0.92848 0.93999 0.97082 0.93514 0.92551 0.89558 0.91243 0.94325 0.95668 0.91879 0.91950 0.93798 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 8.67 60.06 0.52 1.31 16 2 N -0.50 -11.82 4.21 -244.59 -1.03 -12.85 16 3 C 0.02 0.43 8.44 60.06 0.51 0.94 16 4 C 0.23 5.49 1.27 -68.87 -0.09 5.40 16 5 H 0.03 0.93 7.64 -51.93 -0.40 0.53 16 6 C -0.52 -13.85 6.78 -34.44 -0.23 -14.08 16 7 H 0.05 1.43 7.22 -52.49 -0.38 1.05 16 8 C 0.08 2.29 5.39 -17.82 -0.10 2.19 16 9 N -0.85 -24.42 12.76 55.43 0.71 -23.71 16 10 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C -0.12 -2.42 2.06 -89.24 -0.18 -2.60 16 15 H 0.07 1.52 5.92 -51.93 -0.31 1.21 16 16 C -0.11 -2.03 5.86 -25.35 -0.15 -2.17 16 17 C 0.03 0.51 6.49 -2.18 -0.01 0.49 16 18 N -0.52 -8.81 5.66 -238.22 -1.35 -10.16 16 19 C 0.01 0.21 9.53 60.07 0.57 0.78 16 20 C 0.04 0.66 4.06 -2.18 -0.01 0.65 16 21 H 0.01 0.15 6.00 -51.93 -0.31 -0.16 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.07 1.53 7.55 -51.93 -0.39 1.14 16 24 H 0.05 1.12 7.89 -51.93 -0.41 0.71 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.01 0.21 4.74 -51.93 -0.25 -0.04 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.78 6.92 -51.93 -0.36 1.42 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.64 7.98 -51.93 -0.41 0.22 16 32 H 0.02 0.35 7.97 -51.93 -0.41 -0.07 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.84 6.45 -51.93 -0.34 0.50 16 36 H 0.07 1.24 7.07 -51.93 -0.37 0.87 16 LS Contribution 272.55 15.07 4.11 4.11 Total: -1.00 -28.17 272.55 -7.76 -35.93 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -6.00 Total: -2.28 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 0.83 Total: -7.09 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -1.67 Total: -46.71 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.17 -7.76 -35.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259474098.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.175 kcal (2) G-P(sol) polarization free energy of solvation -28.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds