Wall clock time and date at job start Mon Mar 30 2020 02:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 111.00348 * 2 1 4 4 C 1.46899 * 110.99534 * 123.95533 * 2 1 3 5 5 H 1.09004 * 109.46794 * 193.27279 * 4 2 1 6 6 C 1.50693 * 109.47601 * 73.27709 * 4 2 1 7 7 H 1.08001 * 120.00222 * 240.00011 * 6 4 2 8 8 C 1.37882 * 120.00255 * 59.71833 * 6 4 2 9 9 N 1.31510 * 119.99770 * 0.27762 * 8 6 4 10 10 Si 1.86795 * 120.00125 * 180.28170 * 8 6 4 11 11 H 1.48507 * 109.47283 * 59.99916 * 10 8 6 12 12 H 1.48494 * 109.47194 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46990 * 299.99852 * 10 8 6 14 14 C 1.53002 * 109.47384 * 313.27080 * 4 2 1 15 15 H 1.09000 * 110.28690 * 52.73430 * 14 4 2 16 16 C 1.54256 * 110.32421 * 174.86493 * 14 4 2 17 17 C 1.54377 * 105.06115 * 118.89689 * 16 14 4 18 18 N 1.48559 * 104.59365 * 23.85355 * 17 16 14 19 19 C 1.46907 * 110.99906 * 200.95971 * 18 17 16 20 20 C 1.48560 * 104.22168 * 320.51151 * 18 17 16 21 21 H 1.09003 * 109.47154 * 296.05274 * 1 2 3 22 22 H 1.09006 * 109.47017 * 56.04438 * 1 2 3 23 23 H 1.08994 * 109.47728 * 176.04348 * 1 2 3 24 24 H 1.08999 * 109.47026 * 175.70118 * 3 2 1 25 25 H 1.09002 * 109.47065 * 295.70432 * 3 2 1 26 26 H 1.09002 * 109.47182 * 55.70109 * 3 2 1 27 27 H 0.96998 * 120.00147 * 180.02562 * 9 8 6 28 28 H 1.08998 * 110.32589 * 237.79354 * 16 14 4 29 29 H 1.09003 * 110.32705 * 0.02562 * 16 14 4 30 30 H 1.09002 * 110.41463 * 142.62841 * 17 16 14 31 31 H 1.09001 * 110.41368 * 264.95463 * 17 16 14 32 32 H 1.09001 * 109.46897 * 60.12026 * 19 18 17 33 33 H 1.08998 * 109.47275 * 180.12573 * 19 18 17 34 34 H 1.09000 * 109.47084 * 300.12597 * 19 18 17 35 35 H 1.08998 * 110.41274 * 280.70767 * 20 18 17 36 36 H 1.09001 * 110.41073 * 158.26205 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 1 3.0593 -0.5596 1.2534 6 6 1.7937 -2.2384 0.8882 7 1 1.1970 -2.8251 1.5710 8 6 2.3661 -2.8356 -0.2149 9 7 3.0925 -2.1213 -1.0465 10 14 2.1096 -4.6591 -0.5283 11 1 0.6587 -4.9356 -0.6831 12 1 2.8232 -5.0533 -1.7695 13 1 2.6424 -5.4381 0.6182 14 6 1.2550 -0.3587 2.4131 15 1 0.1778 -0.4385 2.2667 16 6 1.7017 -1.2410 3.5969 17 6 2.3169 -0.2604 4.6183 18 7 1.6914 1.0496 4.3031 19 6 2.5017 2.1588 4.8240 20 6 1.6379 1.0808 2.8188 21 1 -0.3633 0.4514 0.9233 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3634 -1.0251 -0.0709 24 1 3.0824 1.3433 0.0770 25 1 1.7096 1.8703 -0.9260 26 1 1.5851 1.9182 0.8490 27 1 3.4949 -2.5413 -1.8228 28 1 0.8436 -1.7527 4.0327 29 1 2.4488 -1.9641 3.2694 30 1 2.0689 -0.5653 5.6350 31 1 3.3982 -0.2079 4.4912 32 1 3.4927 2.1287 4.3712 33 1 2.0199 3.1060 4.5814 34 1 2.5936 2.0647 5.9060 35 1 2.6127 1.3449 2.4087 36 1 0.8785 1.7858 2.4805 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259474098.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:12 Heat of formation + Delta-G solvation = 2.363169 kcal Electronic energy + Delta-G solvation = -15372.078691 eV Core-core repulsion = 13083.868240 eV Total energy + Delta-G solvation = -2288.210451 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.53257 -37.65538 -34.33547 -33.09510 -29.87762 -29.15626 -28.09554 -26.13037 -25.18359 -22.25201 -22.04364 -20.46032 -18.11780 -17.30340 -16.76848 -16.09870 -15.67598 -15.36809 -15.16828 -14.69347 -14.45506 -13.99691 -13.51843 -13.24988 -12.92250 -12.81015 -12.69160 -12.38180 -12.32254 -12.26924 -12.20409 -12.04281 -11.77216 -11.49088 -11.15759 -10.77852 -10.42594 -9.48405 -8.40259 -7.88833 -6.06891 1.46025 1.47070 1.53258 2.51268 3.14902 3.28344 3.77792 3.86718 4.03360 4.16960 4.37907 4.49747 4.55907 4.61765 4.63814 4.66448 4.72284 4.78895 4.85591 4.94804 4.98999 5.03623 5.10346 5.14953 5.27317 5.33688 5.44243 5.66027 5.86565 5.90092 6.09855 6.30177 6.72161 6.94718 7.19387 7.63019 9.13650 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034332 B = 0.010840 C = 0.009213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.359176 B = 2582.329337 C = 3038.480500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.534 5.534 3 C 0.029 3.971 4 C 0.236 3.764 5 H -0.003 1.003 6 C -0.529 4.529 7 H 0.052 0.948 8 C 0.035 3.965 9 N -0.884 5.884 10 Si 0.938 3.062 11 H -0.276 1.276 12 H -0.291 1.291 13 H -0.273 1.273 14 C -0.115 4.115 15 H 0.066 0.934 16 C -0.107 4.107 17 C 0.037 3.963 18 N -0.527 5.527 19 C 0.013 3.987 20 C 0.046 3.954 21 H 0.023 0.977 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.037 0.963 25 H 0.054 0.946 26 H 0.032 0.968 27 H 0.252 0.748 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.036 0.964 32 H 0.022 0.978 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.033 0.967 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 6.100 8.271 10.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.257 5.257 3 C -0.120 4.120 4 C 0.129 3.871 5 H 0.015 0.985 6 C -0.568 4.568 7 H 0.070 0.930 8 C -0.168 4.168 9 N -0.521 5.521 10 Si 0.765 3.235 11 H -0.201 1.201 12 H -0.216 1.216 13 H -0.198 1.198 14 C -0.135 4.135 15 H 0.084 0.916 16 C -0.146 4.146 17 C -0.091 4.091 18 N -0.251 5.251 19 C -0.135 4.135 20 C -0.081 4.081 21 H 0.042 0.958 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.524 5.951 7.911 10.216 hybrid contribution 0.663 -0.678 -0.265 0.985 sum -1.861 5.272 7.647 9.473 Atomic orbital electron populations 1.22109 0.89052 1.00520 0.98657 1.62289 1.06471 1.11062 1.45874 1.22455 0.98902 0.90828 0.99796 1.19134 0.91810 0.92359 0.83756 0.98486 1.21192 1.32591 0.93729 1.09298 0.92978 1.25599 0.94746 1.00429 0.95982 1.70192 1.32610 1.36192 1.13115 0.85961 0.78072 0.82304 0.77187 1.20138 1.21649 1.19792 1.22559 1.00507 0.93460 0.97013 0.91608 1.22203 1.00485 0.97539 0.94387 1.23128 0.96351 0.89581 1.00048 1.65416 1.47212 1.02890 1.09588 1.22557 0.95116 0.94624 1.01216 1.23327 0.99266 0.97511 0.87999 0.95837 0.92764 0.93556 0.94393 0.92756 0.94947 0.93924 0.91720 0.91913 0.88824 0.94523 0.95908 0.90599 0.89855 0.94926 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.86 8.67 127.69 1.11 2.97 16 2 N -0.53 -25.12 4.21 -927.73 -3.91 -29.02 16 3 C 0.03 1.15 8.44 127.69 1.08 2.23 16 4 C 0.24 11.50 1.27 44.17 0.06 11.56 16 5 H 0.00 -0.15 7.64 -2.39 -0.02 -0.17 16 6 C -0.53 -28.32 6.78 25.60 0.17 -28.15 16 7 H 0.05 2.75 7.22 -2.91 -0.02 2.73 16 8 C 0.04 1.95 5.39 84.66 0.46 2.40 16 9 N -0.88 -51.77 12.76 21.45 0.27 -51.49 16 10 Si 0.94 43.71 29.54 68.60 2.03 45.74 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 14 C -0.11 -4.62 2.06 -9.90 -0.02 -4.64 16 15 H 0.07 2.72 5.92 -2.39 -0.01 2.71 16 16 C -0.11 -3.99 5.86 31.49 0.18 -3.81 16 17 C 0.04 1.14 6.49 86.45 0.56 1.71 16 18 N -0.53 -16.39 5.66 -907.60 -5.14 -21.53 16 19 C 0.01 0.33 9.53 127.69 1.22 1.55 16 20 C 0.05 1.63 4.06 86.45 0.35 1.98 16 21 H 0.02 0.89 6.00 -2.39 -0.01 0.88 16 22 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 23 H 0.05 2.08 7.55 -2.39 -0.02 2.06 16 24 H 0.04 1.60 7.89 -2.39 -0.02 1.59 16 25 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.03 1.15 4.74 -2.39 -0.01 1.14 16 27 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 2.61 6.92 -2.39 -0.02 2.59 16 30 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.04 1.15 7.98 -2.39 -0.02 1.14 16 32 H 0.02 0.57 7.97 -2.39 -0.02 0.55 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.03 1.22 6.45 -2.39 -0.02 1.20 16 36 H 0.08 2.53 7.07 -2.39 -0.02 2.52 16 Total: -1.00 -59.81 272.55 -0.55 -60.36 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.03 Total: 8.15 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 5.16 Total: -12.20 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -8.77 Total: -102.05 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -59.81 -0.55 -60.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259474098.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.725 kcal (2) G-P(sol) polarization free energy of solvation -59.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds