Wall clock time and date at job start Mon Mar 30 2020 02:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00257 * 2 1 4 4 H 1.48494 * 109.46879 * 240.00186 * 3 2 1 5 5 H 1.48497 * 109.46721 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47160 * 120.00362 * 3 2 1 7 7 C 1.37884 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99764 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.47046 * 180.02562 * 9 7 2 11 11 O 1.32951 * 126.42315 * 275.13550 * 10 9 7 12 12 N 1.20668 * 113.85427 * 180.34416 * 11 10 9 13 13 H 0.97002 * 124.27484 * 179.74862 * 12 11 10 14 14 C 1.34982 * 111.44261 * 359.71266 * 12 11 10 15 15 O 1.21894 * 127.66758 * 180.02562 * 14 12 11 16 16 C 1.38620 * 126.42399 * 94.99647 * 10 9 7 17 17 C 1.46972 * 128.55532 * 359.96158 * 16 10 9 18 18 O 1.21571 * 120.00178 * 359.70439 * 17 16 10 19 19 O 1.34792 * 120.00338 * 179.70237 * 17 16 10 20 20 H 0.97006 * 119.99645 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47350 * 59.99702 * 9 7 2 22 22 H 1.09003 * 109.46547 * 299.99429 * 9 7 2 23 23 H 0.96700 * 117.00442 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0005 11 8 2.8160 -4.1825 -1.0660 12 7 3.5584 -5.0973 -0.8051 13 1 4.0599 -5.5995 -1.4663 14 6 3.6034 -5.3328 0.5232 15 8 4.2537 -6.1822 1.1075 16 6 2.6912 -4.3334 1.1106 17 6 2.3503 -4.1238 2.5248 18 8 1.5711 -3.2449 2.8384 19 8 2.9016 -4.9059 3.4742 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8902 22 1 0.6247 -2.5570 0.8898 23 1 2.6466 -4.7303 4.3903 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259479842.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:23 Heat of formation + Delta-G solvation = -64.920823 kcal Electronic energy + Delta-G solvation = -13988.072432 eV Core-core repulsion = 11191.726382 eV Total energy + Delta-G solvation = -2796.346049 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.052 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.63786 -39.27819 -37.65649 -35.49701 -34.23079 -32.42185 -31.59101 -28.64264 -25.07146 -23.79776 -21.47161 -20.38581 -18.96887 -17.80514 -17.37141 -16.44146 -16.16973 -15.30282 -14.83504 -14.57706 -14.22763 -13.41837 -13.03628 -12.72268 -12.47232 -11.83985 -11.10808 -10.94380 -10.89172 -10.29900 -10.06913 -9.99292 -9.59545 -9.19570 -8.62291 -8.31320 -6.27543 -4.34199 1.39301 2.32104 2.62481 3.23761 3.28242 3.28500 3.32526 3.66611 4.06590 4.28837 5.02566 5.09649 5.26159 5.92382 6.20341 6.53003 6.96458 7.00176 7.24358 7.61772 7.84996 7.96184 8.36474 8.57428 8.65378 9.30311 10.82851 Molecular weight = 213.05amu Principal moments of inertia in cm(-1) A = 0.035266 B = 0.010176 C = 0.008906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.782924 B = 2750.987554 C = 3143.346841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.069 3.931 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.071 3.929 10 C 0.243 3.757 11 O 0.003 5.997 12 N -0.566 5.566 13 H 0.457 0.543 14 C 0.511 3.489 15 O -0.518 6.518 16 C -0.389 4.389 17 C 0.574 3.426 18 O -0.501 6.501 19 O -0.509 6.509 20 H 0.269 0.731 21 H 0.057 0.943 22 H 0.093 0.907 23 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.625 -6.447 -1.020 7.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.081 0.919 9 C 0.034 3.966 10 C 0.184 3.816 11 O -0.005 6.005 12 N -0.261 5.261 13 H 0.309 0.691 14 C 0.307 3.693 15 O -0.397 6.397 16 C -0.396 4.396 17 C 0.419 3.581 18 O -0.390 6.390 19 O -0.320 6.320 20 H 0.079 0.921 21 H 0.075 0.925 22 H 0.111 0.889 23 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 3.723 -6.613 -1.263 7.693 hybrid contribution 0.599 0.701 0.297 0.969 sum 4.322 -5.912 -0.966 7.387 Atomic orbital electron populations 1.69909 1.06045 1.27781 1.48305 1.24907 0.95012 0.99387 0.94160 0.86394 0.79444 0.81809 0.78920 1.19933 1.20894 1.19868 1.20650 0.93082 0.88317 1.54272 0.91936 1.18871 0.90396 0.85069 1.02258 1.26088 0.85969 0.88000 0.81561 1.83638 1.47770 1.36036 1.33053 1.43369 1.42909 1.28720 1.11065 0.69102 1.19241 0.83656 0.85527 0.80877 1.90913 1.46697 1.37051 1.65016 1.20652 1.16454 1.09951 0.92521 1.18740 0.77140 0.77964 0.84274 1.90987 1.33946 1.31849 1.82221 1.84679 1.68203 1.59058 1.20046 0.92142 0.92539 0.88932 0.73826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.37 13.29 55.43 0.74 -23.64 14 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 14 3 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 14 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 14 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 14 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 14 7 C -0.53 -13.69 9.09 -34.44 -0.31 -14.00 14 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 14 9 C 0.07 1.67 5.20 -29.03 -0.15 1.52 14 10 C 0.24 4.93 6.73 -34.16 -0.23 4.70 14 11 O 0.00 0.05 10.99 19.97 0.22 0.27 14 12 N -0.57 -8.59 6.74 30.53 0.21 -8.38 14 13 H 0.46 4.84 8.96 -40.82 -0.37 4.48 14 14 C 0.51 9.77 8.72 -12.39 -0.11 9.66 14 15 O -0.52 -11.03 17.94 5.02 0.09 -10.94 14 16 C -0.39 -8.01 6.51 -102.44 -0.67 -8.68 14 17 C 0.57 11.90 8.32 34.27 0.29 12.18 14 18 O -0.50 -11.63 15.90 -19.32 -0.31 -11.94 14 19 O -0.51 -8.84 13.27 -40.75 -0.54 -9.39 14 20 H 0.27 7.02 8.31 -40.82 -0.34 6.68 14 21 H 0.06 1.30 8.14 -51.93 -0.42 0.88 14 22 H 0.09 2.37 6.52 -51.93 -0.34 2.04 14 23 H 0.41 4.71 9.11 45.56 0.42 5.12 14 LS Contribution 227.80 15.07 3.43 3.43 Total: -1.00 -32.19 227.80 -2.72 -34.91 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -0.25 Total: 3.05 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -1.28 Total: 7.13 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.94 Total: -32.02 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.54 Total: -31.99 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -32.19 -2.72 -34.91 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259479842.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.010 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds