Wall clock time and date at job start Mon Mar 30 2020 02:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48528 * 111.00189 * 2 1 4 4 C 1.54935 * 103.23012 * 200.28374 * 3 2 1 5 5 C 1.54593 * 102.92182 * 37.41345 * 4 3 2 6 6 C 1.53005 * 110.39683 * 219.08430 * 5 4 3 7 7 C 1.50694 * 109.46902 * 301.14048 * 6 5 4 8 8 H 1.08003 * 120.00531 * 355.40732 * 7 6 5 9 9 C 1.37883 * 119.99990 * 175.41036 * 7 6 5 10 10 N 1.31514 * 119.99845 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00048 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46915 * 60.00523 * 11 9 7 13 13 H 1.48503 * 109.46973 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47433 * 300.00148 * 11 9 7 15 15 C 1.53002 * 110.30937 * 96.95975 * 5 4 3 16 16 C 1.53001 * 109.47272 * 180.59862 * 15 5 4 17 17 N 1.46899 * 109.47113 * 174.64133 * 16 15 5 18 18 C 1.47909 * 110.99649 * 242.60826 * 2 1 3 19 19 H 1.09001 * 109.47374 * 177.39919 * 1 2 3 20 20 H 1.09005 * 109.46613 * 297.39547 * 1 2 3 21 21 H 1.09001 * 109.47674 * 57.38807 * 1 2 3 22 22 H 1.09002 * 110.67245 * 318.71890 * 3 2 1 23 23 H 1.09004 * 110.66902 * 81.67964 * 3 2 1 24 24 H 1.08998 * 110.72447 * 279.05822 * 4 3 2 25 25 H 1.08998 * 110.73115 * 155.77349 * 4 3 2 26 26 H 1.08998 * 109.46563 * 61.13893 * 6 5 4 27 27 H 1.08998 * 109.47223 * 181.13351 * 6 5 4 28 28 H 0.97000 * 120.00115 * 179.97438 * 10 9 7 29 29 H 1.09005 * 109.47303 * 60.59907 * 15 5 4 30 30 H 1.09003 * 109.47183 * 300.59795 * 15 5 4 31 31 H 1.09006 * 109.46769 * 54.64189 * 16 15 5 32 32 H 1.08997 * 109.47228 * 294.63951 * 16 15 5 33 33 H 1.00902 * 111.00013 * 56.04640 * 17 16 15 34 34 H 1.00900 * 110.99991 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.91865 * 26.48734 * 18 2 1 36 36 H 1.08998 * 109.91344 * 265.19487 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4491 1.2106 -0.5229 5 6 3.2981 0.1054 -1.5932 6 6 4.4891 -0.8537 -1.5409 7 6 5.7640 -0.0845 -1.7731 8 1 5.7238 0.9674 -2.0146 9 6 6.9820 -0.7237 -1.6774 10 7 7.0311 -2.0045 -1.3830 11 14 8.5622 0.2296 -1.9660 12 1 8.6595 1.3364 -0.9806 13 1 9.7252 -0.6799 -1.8059 14 1 8.5583 0.7900 -3.3411 15 6 3.1792 0.7275 -2.9859 16 6 3.0159 -0.3812 -4.0276 17 7 2.7736 0.2181 -5.3467 18 6 1.9989 -0.6353 -1.2261 19 1 -0.3634 -1.0266 -0.0466 20 1 -0.3633 0.4729 0.9125 21 1 -0.3634 0.5538 -0.8656 22 1 1.4237 2.0205 -0.6728 23 1 2.0014 1.7987 1.0091 24 1 4.1115 0.8835 0.2786 25 1 3.8123 2.1351 -0.9717 26 1 4.5269 -1.3330 -0.5627 27 1 4.3775 -1.6141 -2.3139 28 1 7.8879 -2.4543 -1.3160 29 1 4.0791 1.3024 -3.2051 30 1 2.3110 1.3859 -3.0169 31 1 2.1712 -1.0140 -3.7552 32 1 3.9241 -0.9828 -4.0632 33 1 3.5123 0.8596 -5.5937 34 1 2.6618 -0.4942 -6.0524 35 1 1.2756 -0.5402 -2.0360 36 1 2.2121 -1.6873 -1.0367 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259597939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:54 Heat of formation + Delta-G solvation = -33.319105 kcal Electronic energy + Delta-G solvation = -15035.186818 eV Core-core repulsion = 12745.429068 eV Total energy + Delta-G solvation = -2289.757750 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.59390 -36.68814 -35.08060 -33.63918 -30.77925 -29.22602 -28.20233 -25.92684 -24.51444 -23.08838 -21.92273 -19.63459 -18.22405 -16.97884 -16.77518 -16.20183 -16.15548 -15.64631 -15.25023 -14.69041 -14.32015 -14.20923 -13.72377 -13.48002 -13.15164 -12.82170 -12.75554 -12.50992 -12.34547 -12.27871 -12.11597 -11.95240 -11.75103 -11.20060 -10.86201 -10.75084 -10.48518 -9.57025 -9.28056 -8.12798 -6.20084 1.40010 1.41759 1.49013 2.43300 3.20347 3.21328 3.65830 3.82578 3.97816 4.20272 4.30954 4.39120 4.46601 4.60114 4.64153 4.70326 4.73710 4.83985 4.95983 5.00948 5.05487 5.12916 5.23387 5.37874 5.45218 5.53063 5.64014 5.75957 5.90628 6.05938 6.21403 6.23499 6.35323 6.62346 6.95027 7.47103 8.98861 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027452 B = 0.010254 C = 0.008632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.735494 B = 2729.967931 C = 3243.104043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.542 5.542 3 C 0.041 3.959 4 C -0.099 4.099 5 C -0.058 4.058 6 C 0.050 3.950 7 C -0.511 4.511 8 H 0.062 0.938 9 C -0.002 4.002 10 N -0.936 5.936 11 Si 0.952 3.048 12 H -0.269 1.269 13 H -0.289 1.289 14 H -0.268 1.268 15 C -0.079 4.079 16 C 0.068 3.932 17 N -0.849 5.849 18 C 0.050 3.950 19 H 0.068 0.932 20 H 0.080 0.920 21 H 0.032 0.968 22 H 0.054 0.946 23 H 0.087 0.913 24 H 0.049 0.951 25 H 0.069 0.931 26 H -0.018 1.018 27 H -0.008 1.008 28 H 0.259 0.741 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.012 0.988 33 H 0.343 0.657 34 H 0.346 0.654 35 H 0.053 0.947 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.363 6.264 -2.270 12.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.266 5.266 3 C -0.086 4.086 4 C -0.137 4.137 5 C -0.059 4.059 6 C 0.012 3.988 7 C -0.549 4.549 8 H 0.080 0.920 9 C -0.198 4.198 10 N -0.577 5.577 11 Si 0.778 3.222 12 H -0.194 1.194 13 H -0.215 1.215 14 H -0.193 1.193 15 C -0.117 4.117 16 C -0.063 4.063 17 N -0.378 5.378 18 C -0.077 4.077 19 H 0.087 0.913 20 H 0.099 0.901 21 H 0.051 0.949 22 H 0.072 0.928 23 H 0.105 0.895 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.000 1.000 27 H 0.011 0.989 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.031 0.969 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.071 0.929 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.772 6.135 -1.441 12.480 hybrid contribution 1.833 -0.229 -0.966 2.085 sum -8.939 5.905 -2.406 10.980 Atomic orbital electron populations 1.22546 0.86768 1.02252 1.01471 1.64671 1.09187 1.15640 1.37135 1.23244 0.94684 0.89461 1.01215 1.22365 0.95856 0.97863 0.97602 1.21337 0.94151 0.95691 0.94708 1.19003 0.92134 0.93485 0.94130 1.21502 0.91615 0.96067 1.45731 0.92029 1.25869 1.02653 0.95675 0.95650 1.70101 1.26018 1.10897 1.50675 0.85692 0.78997 0.78491 0.79018 1.19425 1.21513 1.19331 1.21355 1.00642 0.97041 0.92682 1.21701 0.98642 0.96309 0.89667 1.58830 1.52180 1.22905 1.03929 1.22940 0.95599 0.98392 0.90800 0.91287 0.90141 0.94942 0.92797 0.89491 0.93219 0.91193 0.99963 0.98932 0.93236 0.92840 0.91865 0.91629 0.96945 0.84512 0.84141 0.92910 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.40 127.69 1.20 1.64 16 2 N -0.54 -17.64 5.55 -909.15 -5.05 -22.69 16 3 C 0.04 1.25 6.56 86.65 0.57 1.82 16 4 C -0.10 -3.69 5.31 31.80 0.17 -3.52 16 5 C -0.06 -2.29 0.40 -51.30 -0.02 -2.31 16 6 C 0.05 2.55 3.41 29.85 0.10 2.65 16 7 C -0.51 -27.81 7.89 25.60 0.20 -27.61 16 8 H 0.06 3.21 6.58 -2.91 -0.02 3.19 16 9 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 10 N -0.94 -56.98 13.29 21.45 0.28 -56.69 16 11 Si 0.95 44.10 29.54 68.60 2.03 46.12 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 C -0.08 -2.84 4.03 30.60 0.12 -2.71 16 16 C 0.07 2.34 6.10 86.30 0.53 2.86 16 17 N -0.85 -23.97 9.62 -186.72 -1.80 -25.76 16 18 C 0.05 1.81 5.42 86.44 0.47 2.28 16 19 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 20 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 21 H 0.03 0.74 8.00 -2.39 -0.02 0.72 16 22 H 0.05 1.45 7.96 -2.39 -0.02 1.43 16 23 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 24 H 0.05 2.13 7.82 -2.39 -0.02 2.11 16 25 H 0.07 2.46 7.85 -2.39 -0.02 2.44 16 26 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 27 H -0.01 -0.42 6.43 -2.39 -0.02 -0.43 16 28 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.05 2.06 6.86 -2.38 -0.02 2.05 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.07 2.20 6.62 -2.38 -0.02 2.18 16 32 H 0.01 0.51 6.70 -2.39 -0.02 0.49 16 33 H 0.34 9.20 8.99 -89.69 -0.81 8.39 16 34 H 0.35 8.36 9.08 -89.69 -0.81 7.54 16 35 H 0.05 1.72 6.26 -2.39 -0.01 1.70 16 36 H 0.05 2.14 7.68 -2.39 -0.02 2.12 16 Total: -1.00 -62.61 279.16 -1.29 -63.90 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.56 Total: 19.65 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 3.80 Total: -24.53 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -6.56 Total: -105.15 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -62.61 -1.29 -63.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259597939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.585 kcal (2) G-P(sol) polarization free energy of solvation -62.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds