Wall clock time and date at job start Mon Mar 30 2020 02:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48555 * 111.00297 * 2 1 4 4 C 1.54383 * 104.59691 * 200.96178 * 3 2 1 5 5 C 1.54259 * 105.05802 * 23.85224 * 4 3 2 6 6 C 1.53006 * 110.32111 * 118.99869 * 5 4 3 7 7 C 1.50701 * 109.47086 * 184.14320 * 6 5 4 8 8 H 1.08007 * 119.99653 * 358.34722 * 7 6 5 9 9 C 1.37870 * 120.00158 * 178.34743 * 7 6 5 10 10 N 1.31511 * 120.00261 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00175 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47069 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47397 * 120.00080 * 11 9 7 14 14 H 1.48497 * 109.47436 * 240.00196 * 11 9 7 15 15 C 1.52995 * 110.32363 * 241.10248 * 5 4 3 16 16 C 1.52997 * 109.47194 * 296.19822 * 15 5 4 17 17 N 1.46903 * 109.47255 * 174.56469 * 16 15 5 18 18 C 1.48563 * 110.99800 * 244.58103 * 2 1 3 19 19 H 1.08998 * 109.46599 * 60.12219 * 1 2 3 20 20 H 1.09000 * 109.46751 * 180.12486 * 1 2 3 21 21 H 1.08995 * 109.46677 * 300.12388 * 1 2 3 22 22 H 1.08997 * 110.41332 * 82.18213 * 3 2 1 23 23 H 1.09000 * 110.41034 * 319.74258 * 3 2 1 24 24 H 1.08999 * 110.32252 * 264.95672 * 4 3 2 25 25 H 1.08997 * 110.40814 * 142.79097 * 4 3 2 26 26 H 1.08997 * 109.47223 * 304.14027 * 6 5 4 27 27 H 1.09003 * 109.47196 * 64.14117 * 6 5 4 28 28 H 0.96995 * 120.00456 * 180.02562 * 10 9 7 29 29 H 1.09000 * 109.47081 * 56.19929 * 15 5 4 30 30 H 1.09002 * 109.47028 * 176.19834 * 15 5 4 31 31 H 1.09008 * 109.47261 * 294.55909 * 16 15 5 32 32 H 1.08998 * 109.47236 * 54.56312 * 16 15 5 33 33 H 1.00899 * 110.99670 * 56.04481 * 17 16 15 34 34 H 1.00900 * 110.99970 * 179.97438 * 17 16 15 35 35 H 1.09008 * 110.41094 * 40.26113 * 18 2 1 36 36 H 1.09003 * 110.41473 * 277.82016 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0015 1.3868 0.0000 4 6 3.4434 1.2500 -0.5345 5 6 3.4433 -0.0540 -1.3586 6 6 3.7972 0.2396 -2.8179 7 6 3.6924 -1.0286 -3.6251 8 1 3.4284 -1.9570 -3.1404 9 6 3.9336 -1.0038 -4.9824 10 7 4.2556 0.1265 -5.5725 11 14 3.8044 -2.5760 -5.9829 12 1 3.4309 -3.7019 -5.0895 13 1 2.7661 -2.4114 -7.0316 14 1 5.1130 -2.8644 -6.6229 15 6 4.4329 -1.0582 -0.7644 16 6 5.8525 -0.4967 -0.8667 17 7 6.7867 -1.3996 -0.1811 18 6 2.0014 -0.5953 -1.2527 19 1 -0.3632 0.5119 -0.8911 20 1 -0.3633 -1.0277 0.0022 21 1 -0.3632 0.5157 0.8889 22 1 2.0080 1.7916 1.0120 23 1 1.4099 2.0211 -0.6602 24 1 4.1484 1.1747 0.2934 25 1 3.6955 2.0992 -1.1696 26 1 3.1065 0.9824 -3.2169 27 1 4.8159 0.6233 -2.8746 28 1 4.4249 0.1441 -6.5274 29 1 4.1867 -1.2349 0.2826 30 1 4.3728 -1.9968 -1.3152 31 1 6.1345 -0.4107 -1.9161 32 1 5.8887 0.4871 -0.3989 33 1 6.7251 -2.3350 -0.5543 34 1 7.7320 -1.0507 -0.2350 35 1 1.4098 -0.2713 -2.1090 36 1 2.0079 -1.6832 -1.1839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259597943.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:55 Heat of formation + Delta-G solvation = -12.923775 kcal Electronic energy + Delta-G solvation = -15033.794972 eV Core-core repulsion = 12744.921630 eV Total energy + Delta-G solvation = -2288.873343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.01541 -35.27115 -33.20847 -31.94110 -29.40278 -27.27134 -26.69889 -24.55559 -22.49371 -21.65438 -20.52020 -17.91089 -16.25049 -15.43970 -15.13796 -14.77353 -14.41348 -14.21854 -13.71406 -13.49119 -12.63126 -12.40644 -12.24334 -11.83816 -11.52665 -11.17308 -11.05337 -10.95229 -10.82464 -10.56425 -10.47375 -10.27688 -10.02106 -9.57387 -9.05884 -8.86806 -8.39856 -8.13955 -8.00271 -6.01938 -4.02953 3.27646 3.36288 3.39636 4.43430 4.57302 5.05858 5.28035 5.31862 5.35269 5.60876 5.68886 5.81676 5.90221 5.98017 6.03329 6.08982 6.15563 6.36203 6.44330 6.51859 6.55157 6.70726 6.76624 6.83140 7.05412 7.12607 7.44770 7.49681 7.59810 7.68364 7.77982 7.86862 7.98262 8.41723 9.03324 9.60914 11.09212 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.011287 C = 0.008934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.780899 B = 2480.116149 C = 3133.511993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.522 5.522 3 C 0.034 3.966 4 C -0.121 4.121 5 C -0.051 4.051 6 C 0.034 3.966 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.885 3.115 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.286 1.286 15 C -0.084 4.084 16 C 0.059 3.941 17 N -0.856 5.856 18 C 0.056 3.944 19 H 0.025 0.975 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.069 0.931 23 H 0.037 0.963 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.014 0.986 27 H 0.020 0.980 28 H 0.258 0.742 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.336 0.664 34 H 0.331 0.669 35 H 0.049 0.951 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 0.291 8.746 8.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.246 5.246 3 C -0.094 4.094 4 C -0.159 4.159 5 C -0.052 4.052 6 C -0.003 4.003 7 C -0.547 4.547 8 H 0.075 0.925 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.713 3.287 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.122 4.122 16 C -0.071 4.071 17 N -0.384 5.384 18 C -0.072 4.072 19 H 0.043 0.957 20 H 0.083 0.917 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.032 0.968 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.067 0.933 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.967 0.233 9.713 9.913 hybrid contribution 0.007 -0.444 -2.453 2.493 sum -1.961 -0.211 7.260 7.523 Atomic orbital electron populations 1.22452 0.89308 1.01600 1.00035 1.65398 1.07072 1.15168 1.36955 1.23051 0.96254 0.90245 0.99808 1.22534 0.95284 0.98816 0.99241 1.21328 0.93183 0.92820 0.97892 1.19263 0.96733 0.96769 0.87546 1.21258 1.46130 0.94822 0.92510 0.92472 1.25001 0.95588 0.95784 0.98064 1.69966 1.48005 1.25281 1.10321 0.86643 0.77589 0.84058 0.80382 1.19718 1.21150 1.21182 1.21382 0.92674 0.98698 0.99476 1.21903 0.92910 0.95502 0.96767 1.58874 1.09938 1.06274 1.63285 1.23115 0.95561 0.99402 0.89081 0.95657 0.91736 0.92156 0.91260 0.94454 0.91654 0.91690 0.96802 0.96172 0.93179 0.92703 0.91873 0.93897 0.92062 0.85218 0.85784 0.93271 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.53 60.07 0.57 0.79 16 2 N -0.52 -8.95 5.66 -238.22 -1.35 -10.30 16 3 C 0.03 0.56 6.49 -2.18 -0.01 0.55 16 4 C -0.12 -2.13 5.70 -25.35 -0.14 -2.27 16 5 C -0.05 -1.02 0.46 -153.13 -0.07 -1.09 16 6 C 0.03 0.83 3.39 -27.88 -0.09 0.74 16 7 C -0.51 -13.54 7.91 -34.44 -0.27 -13.81 16 8 H 0.06 1.50 6.58 -52.48 -0.35 1.15 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 11 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 15 C -0.08 -1.61 4.03 -26.73 -0.11 -1.72 16 16 C 0.06 1.06 6.10 -3.82 -0.02 1.04 16 17 N -0.86 -13.25 9.62 -10.37 -0.10 -13.35 16 18 C 0.06 1.08 4.75 -2.18 -0.01 1.07 16 19 H 0.02 0.37 7.97 -51.93 -0.41 -0.05 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.04 0.60 7.97 -51.93 -0.41 0.19 16 24 H 0.06 1.09 6.69 -51.93 -0.35 0.75 16 25 H 0.06 1.16 7.71 -51.93 -0.40 0.76 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.02 0.52 6.50 -51.93 -0.34 0.19 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.29 6.84 -51.93 -0.36 0.94 16 31 H 0.04 0.88 6.73 -51.92 -0.35 0.53 16 32 H 0.06 1.07 6.62 -51.93 -0.34 0.73 16 33 H 0.34 4.98 8.99 -39.29 -0.35 4.63 16 34 H 0.33 4.44 9.08 -39.29 -0.36 4.08 16 35 H 0.05 1.04 7.62 -51.92 -0.40 0.65 16 36 H 0.07 1.44 7.86 -51.93 -0.41 1.03 16 LS Contribution 279.42 15.07 4.21 4.21 Total: -1.00 -28.64 279.42 -7.85 -36.49 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.07 Total: 5.44 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -0.26 Total: -13.23 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.71 Total: -49.16 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.64 -7.85 -36.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259597943.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.566 kcal (2) G-P(sol) polarization free energy of solvation -28.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds