Wall clock time and date at job start Mon Mar 30 2020 02:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48555 * 111.00297 * 2 1 4 4 C 1.54383 * 104.59691 * 200.96178 * 3 2 1 5 5 C 1.54259 * 105.05802 * 23.85224 * 4 3 2 6 6 C 1.53006 * 110.32111 * 118.99869 * 5 4 3 7 7 C 1.50701 * 109.47086 * 184.14320 * 6 5 4 8 8 H 1.08007 * 119.99653 * 358.34722 * 7 6 5 9 9 C 1.37870 * 120.00158 * 178.34743 * 7 6 5 10 10 N 1.31511 * 120.00261 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00175 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47069 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47397 * 120.00080 * 11 9 7 14 14 H 1.48497 * 109.47436 * 240.00196 * 11 9 7 15 15 C 1.52995 * 110.32363 * 241.10248 * 5 4 3 16 16 C 1.52997 * 109.47194 * 296.19822 * 15 5 4 17 17 N 1.46903 * 109.47255 * 174.56469 * 16 15 5 18 18 C 1.48563 * 110.99800 * 244.58103 * 2 1 3 19 19 H 1.08998 * 109.46599 * 60.12219 * 1 2 3 20 20 H 1.09000 * 109.46751 * 180.12486 * 1 2 3 21 21 H 1.08995 * 109.46677 * 300.12388 * 1 2 3 22 22 H 1.08997 * 110.41332 * 82.18213 * 3 2 1 23 23 H 1.09000 * 110.41034 * 319.74258 * 3 2 1 24 24 H 1.08999 * 110.32252 * 264.95672 * 4 3 2 25 25 H 1.08997 * 110.40814 * 142.79097 * 4 3 2 26 26 H 1.08997 * 109.47223 * 304.14027 * 6 5 4 27 27 H 1.09003 * 109.47196 * 64.14117 * 6 5 4 28 28 H 0.96995 * 120.00456 * 180.02562 * 10 9 7 29 29 H 1.09000 * 109.47081 * 56.19929 * 15 5 4 30 30 H 1.09002 * 109.47028 * 176.19834 * 15 5 4 31 31 H 1.09008 * 109.47261 * 294.55909 * 16 15 5 32 32 H 1.08998 * 109.47236 * 54.56312 * 16 15 5 33 33 H 1.00899 * 110.99670 * 56.04481 * 17 16 15 34 34 H 1.00900 * 110.99970 * 179.97438 * 17 16 15 35 35 H 1.09008 * 110.41094 * 40.26113 * 18 2 1 36 36 H 1.09003 * 110.41473 * 277.82016 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0015 1.3868 0.0000 4 6 3.4434 1.2500 -0.5345 5 6 3.4433 -0.0540 -1.3586 6 6 3.7972 0.2396 -2.8179 7 6 3.6924 -1.0286 -3.6251 8 1 3.4284 -1.9570 -3.1404 9 6 3.9336 -1.0038 -4.9824 10 7 4.2556 0.1265 -5.5725 11 14 3.8044 -2.5760 -5.9829 12 1 3.4309 -3.7019 -5.0895 13 1 2.7661 -2.4114 -7.0316 14 1 5.1130 -2.8644 -6.6229 15 6 4.4329 -1.0582 -0.7644 16 6 5.8525 -0.4967 -0.8667 17 7 6.7867 -1.3996 -0.1811 18 6 2.0014 -0.5953 -1.2527 19 1 -0.3632 0.5119 -0.8911 20 1 -0.3633 -1.0277 0.0022 21 1 -0.3632 0.5157 0.8889 22 1 2.0080 1.7916 1.0120 23 1 1.4099 2.0211 -0.6602 24 1 4.1484 1.1747 0.2934 25 1 3.6955 2.0992 -1.1696 26 1 3.1065 0.9824 -3.2169 27 1 4.8159 0.6233 -2.8746 28 1 4.4249 0.1441 -6.5274 29 1 4.1867 -1.2349 0.2826 30 1 4.3728 -1.9968 -1.3152 31 1 6.1345 -0.4107 -1.9161 32 1 5.8887 0.4871 -0.3989 33 1 6.7251 -2.3350 -0.5543 34 1 7.7320 -1.0507 -0.2350 35 1 1.4098 -0.2713 -2.1090 36 1 2.0079 -1.6832 -1.1839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259597943.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:55 Heat of formation + Delta-G solvation = -34.120089 kcal Electronic energy + Delta-G solvation = -15034.714114 eV Core-core repulsion = 12744.921630 eV Total energy + Delta-G solvation = -2289.792484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.53213 -36.73461 -35.04068 -33.61728 -30.90412 -29.04248 -28.19805 -26.14019 -24.30954 -23.13184 -21.93339 -19.54368 -18.27910 -16.95169 -16.76994 -16.18586 -16.05948 -15.76086 -15.13708 -14.91598 -14.35208 -13.94511 -13.84599 -13.45981 -13.23381 -12.91082 -12.71230 -12.39920 -12.26062 -12.22432 -12.12339 -12.07310 -11.69251 -11.18854 -10.87920 -10.73207 -10.52307 -9.52009 -9.39946 -8.16134 -6.23203 1.36509 1.38912 1.50009 2.41039 3.16413 3.23523 3.68997 3.86253 3.90381 4.26788 4.38189 4.44858 4.48266 4.55724 4.62128 4.75313 4.89410 4.91058 4.97383 5.00378 5.02580 5.13405 5.19743 5.30508 5.46751 5.49812 5.61483 5.77661 5.87951 5.97097 6.17139 6.27262 6.33836 6.66959 6.91901 7.44572 8.95658 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.011287 C = 0.008934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.780899 B = 2480.116149 C = 3133.511993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.523 5.523 3 C 0.037 3.963 4 C -0.118 4.118 5 C -0.051 4.051 6 C 0.046 3.954 7 C -0.511 4.511 8 H 0.060 0.940 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.950 3.050 12 H -0.262 1.262 13 H -0.284 1.284 14 H -0.282 1.282 15 C -0.074 4.074 16 C 0.069 3.931 17 N -0.849 5.849 18 C 0.062 3.938 19 H 0.020 0.980 20 H 0.071 0.929 21 H 0.085 0.915 22 H 0.098 0.902 23 H 0.035 0.965 24 H 0.080 0.920 25 H 0.056 0.944 26 H -0.020 1.020 27 H -0.001 1.001 28 H 0.259 0.741 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.010 0.990 32 H 0.069 0.931 33 H 0.342 0.658 34 H 0.345 0.655 35 H 0.023 0.977 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.057 -0.488 10.326 10.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.246 5.246 3 C -0.091 4.091 4 C -0.156 4.156 5 C -0.052 4.052 6 C 0.009 3.991 7 C -0.550 4.550 8 H 0.078 0.922 9 C -0.196 4.196 10 N -0.576 5.576 11 Si 0.776 3.224 12 H -0.186 1.186 13 H -0.210 1.210 14 H -0.208 1.208 15 C -0.112 4.112 16 C -0.062 4.062 17 N -0.378 5.378 18 C -0.066 4.066 19 H 0.038 0.962 20 H 0.090 0.910 21 H 0.104 0.896 22 H 0.116 0.884 23 H 0.053 0.947 24 H 0.098 0.902 25 H 0.075 0.925 26 H -0.001 1.001 27 H 0.017 0.983 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.042 0.958 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.298 -0.554 11.313 11.557 hybrid contribution 0.108 -0.171 -2.916 2.923 sum -2.190 -0.726 8.397 8.708 Atomic orbital electron populations 1.22550 0.87457 1.02520 1.01004 1.65406 1.08871 1.15550 1.34822 1.23106 0.94854 0.89859 1.01268 1.22488 0.96999 0.96949 0.99122 1.21217 0.93952 0.94702 0.95320 1.19073 0.94513 0.95024 0.90513 1.21572 1.44966 0.95554 0.92878 0.92207 1.25827 0.95516 0.98835 0.99444 1.70094 1.49432 1.27460 1.10609 0.85619 0.77530 0.80472 0.78807 1.18568 1.20979 1.20826 1.21254 0.93002 0.97472 0.99434 1.21701 0.92901 0.96416 0.95135 1.58836 1.10505 1.06159 1.62343 1.22924 0.94921 0.99197 0.89572 0.96179 0.90974 0.89595 0.88426 0.94665 0.90162 0.92545 1.00144 0.98291 0.93184 0.91674 0.93585 0.97152 0.91312 0.84647 0.84215 0.95815 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.35 9.53 127.69 1.22 1.57 16 2 N -0.52 -16.86 5.66 -907.61 -5.14 -22.00 16 3 C 0.04 1.12 6.49 86.45 0.56 1.68 16 4 C -0.12 -4.02 5.70 31.49 0.18 -3.84 16 5 C -0.05 -2.02 0.46 -51.29 -0.02 -2.05 16 6 C 0.05 2.33 3.39 29.85 0.10 2.43 16 7 C -0.51 -27.74 7.91 25.60 0.20 -27.54 16 8 H 0.06 3.16 6.58 -2.91 -0.02 3.14 16 9 C 0.00 0.05 5.46 84.65 0.46 0.51 16 10 N -0.93 -56.15 13.29 21.44 0.28 -55.86 16 11 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 12 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 15 C -0.07 -2.75 4.03 30.59 0.12 -2.63 16 16 C 0.07 2.44 6.10 86.30 0.53 2.97 16 17 N -0.85 -24.87 9.62 -186.71 -1.80 -26.66 16 18 C 0.06 2.39 4.75 86.45 0.41 2.80 16 19 H 0.02 0.55 7.97 -2.39 -0.02 0.53 16 20 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 21 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.03 1.08 7.97 -2.39 -0.02 1.06 16 24 H 0.08 2.50 6.69 -2.39 -0.02 2.48 16 25 H 0.06 2.01 7.71 -2.39 -0.02 1.99 16 26 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 27 H 0.00 -0.06 6.50 -2.39 -0.02 -0.08 16 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.05 1.86 6.84 -2.39 -0.02 1.84 16 31 H 0.01 0.43 6.73 -2.38 -0.02 0.41 16 32 H 0.07 2.32 6.62 -2.39 -0.02 2.31 16 33 H 0.34 9.58 8.99 -89.69 -0.81 8.77 16 34 H 0.35 8.61 9.08 -89.69 -0.81 7.80 16 35 H 0.02 1.02 7.62 -2.38 -0.02 1.00 16 36 H 0.07 2.68 7.86 -2.39 -0.02 2.66 16 Total: -1.00 -61.35 279.42 -1.42 -62.77 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -0.56 Total: 19.85 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 3.76 Total: -24.10 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -6.65 Total: -104.52 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -61.35 -1.42 -62.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259597943.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.652 kcal (2) G-P(sol) polarization free energy of solvation -61.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds